Wall clock time and date at job start Tue Mar 31 2020 14:52:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 110.88719 * 2 1
4 4 C 1.55127 * 110.90975 * 124.10099 * 2 1 3
5 5 N 1.47430 * 104.72411 * 155.27354 * 4 2 1
6 6 C 1.34768 * 125.64655 * 155.81613 * 5 4 2
7 7 O 1.21283 * 120.00549 * 359.71366 * 6 5 4
8 8 C 1.50707 * 119.99882 * 179.71452 * 6 5 4
9 9 C 1.50694 * 109.47023 * 179.97438 * 8 6 5
10 10 C 1.38233 * 119.98636 * 100.00235 * 9 8 6
11 11 C 1.38191 * 120.05084 * 179.97438 * 10 9 8
12 12 C 1.38491 * 120.02630 * 0.28397 * 11 10 9
13 13 F 1.35097 * 120.01430 * 179.74880 * 12 11 10
14 14 C 1.38408 * 119.97177 * 359.48296 * 12 11 10
15 15 C 1.38433 * 119.95015 * 0.49160 * 14 12 11
16 16 F 1.35102 * 120.01397 * 179.79013 * 15 14 12
17 17 C 1.47020 * 108.70188 * 335.55186 * 5 4 2
18 18 C 1.54326 * 107.27208 * 1.28983 * 17 5 4
19 19 H 1.09000 * 110.72258 * 140.55715 * 18 17 5
20 20 N 1.46508 * 110.72009 * 263.82973 * 18 17 5
21 21 C 1.36935 * 119.99861 * 273.54537 * 20 18 17
22 22 H 1.07999 * 119.99894 * 0.02562 * 21 20 18
23 23 C 1.38814 * 120.00204 * 179.97438 * 21 20 18
24 24 N 1.31619 * 119.99517 * 0.02562 * 23 21 20
25 25 Si 1.86789 * 120.00249 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47297 * 0.02562 * 25 23 21
27 27 H 1.48506 * 109.47151 * 120.00532 * 25 23 21
28 28 H 1.48498 * 109.47172 * 240.00336 * 25 23 21
29 29 H 1.08997 * 109.47048 * 183.87993 * 1 2 3
30 30 H 1.09001 * 109.47131 * 303.87368 * 1 2 3
31 31 H 1.08998 * 109.47564 * 63.87359 * 1 2 3
32 32 H 1.08996 * 110.49631 * 36.43049 * 4 2 1
33 33 H 1.09001 * 110.33988 * 274.03584 * 4 2 1
34 34 H 1.09004 * 109.46681 * 60.00089 * 8 6 5
35 35 H 1.08990 * 109.47301 * 300.00278 * 8 6 5
36 36 H 1.07993 * 119.97364 * 0.02562 * 10 9 8
37 37 H 1.08002 * 119.98388 * 179.97438 * 11 10 9
38 38 H 1.08002 * 120.02149 * 180.25988 * 14 12 11
39 39 H 1.08997 * 109.88367 * 120.70277 * 17 5 4
40 40 H 1.09000 * 109.88246 * 241.71731 * 17 5 4
41 41 H 0.97001 * 119.99708 * 93.53944 * 20 18 17
42 42 H 0.96998 * 119.99741 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9186 1.0184 0.0000
4 6 2.0836 -0.8125 1.1999
5 7 3.4272 -1.2434 0.7726
6 6 4.4477 -1.5623 1.5931
7 8 4.3010 -1.5012 2.7955
8 6 5.7712 -1.9948 1.0166
9 6 6.7344 -2.2911 2.1370
10 6 6.9618 -3.5982 2.5251
11 6 7.8452 -3.8714 3.5521
12 6 8.4993 -2.8354 4.1976
13 9 9.3591 -3.1025 5.2049
14 6 8.2761 -1.5266 3.8066
15 6 7.3913 -1.2540 2.7774
16 9 7.1692 0.0233 2.3976
17 6 3.4674 -1.2739 -0.6967
18 6 2.0861 -0.8074 -1.2026
19 1 2.1920 -0.1690 -2.0798
20 7 1.2266 -1.9568 -1.4971
21 6 1.2813 -2.5551 -2.7276
22 1 1.9582 -2.1799 -3.4808
23 6 0.4674 -3.6445 -3.0065
24 7 -0.3572 -4.1019 -2.0882
25 14 0.5425 -4.4611 -4.6847
26 1 1.5432 -3.7626 -5.5308
27 1 0.9363 -5.8841 -4.5256
28 1 -0.7920 -4.3862 -5.3318
29 1 -0.3633 -1.0253 0.0695
30 1 -0.3633 0.5728 0.8532
31 1 -0.3634 0.4525 -0.9226
32 1 1.4524 -1.6787 1.3980
33 1 2.1516 -0.1811 2.0859
34 1 6.1741 -1.1966 0.3931
35 1 5.6290 -2.8909 0.4127
36 1 6.4493 -4.4064 2.0248
37 1 8.0217 -4.8930 3.8547
38 1 8.7890 -0.7183 4.3067
39 1 4.2425 -0.5993 -1.0604
40 1 3.6676 -2.2884 -1.0411
41 1 0.6190 -2.2939 -0.8203
42 1 -0.9262 -4.8629 -2.2832
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054680434.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:52:58
Heat of formation + Delta-G solvation = -102.997900 kcal
Electronic energy + Delta-G solvation = -27219.403962 eV
Core-core repulsion = 23027.903867 eV
Total energy + Delta-G solvation = -4191.500095 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-50.07785 -50.04025 -41.27388 -39.94435 -38.81479 -35.66769 -34.17959 -33.49332
-32.19358 -31.82470 -29.33796 -28.95733 -26.79943 -25.73588 -24.25545 -23.73139
-22.85646 -20.70210 -20.22805 -19.38006 -19.23891 -18.32955 -18.09162 -17.39483
-16.99079 -16.85111 -16.66212 -16.40919 -16.35439 -15.87978 -15.82059 -15.45272
-15.37839 -14.83402 -14.66534 -14.50677 -14.19449 -13.86838 -13.53469 -13.35656
-13.06652 -13.00976 -12.95225 -12.85567 -12.80293 -12.74206 -12.37008 -12.30669
-12.04296 -11.95497 -11.44122 -11.36203 -11.08245 -10.89466 -10.09672 -9.67033
-9.62016 -8.97871 -7.89274 -5.17285 -0.13916 -0.00887 1.51856 1.53483
1.59488 1.62072 1.97990 2.39273 2.60468 2.82657 3.34165 3.43032
3.45695 3.49422 3.54885 3.85246 3.88937 3.92678 3.96137 4.07713
4.11243 4.37882 4.44460 4.47230 4.62521 4.66342 4.73770 4.76419
4.81263 4.89427 4.89844 5.00685 5.01035 5.02410 5.18191 5.22541
5.28590 5.36010 5.55949 5.62419 5.72240 6.32278 6.57206 7.11831
7.40023 8.14432 8.37083 9.34224
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.016706 B = 0.002955 C = 0.002684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.619945 B = 9473.154523 C =10431.451582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.100 4.100
3 H 0.108 0.892
4 C 0.115 3.885
5 N -0.608 5.608
6 C 0.523 3.477
7 O -0.585 6.585
8 C -0.092 4.092
9 C -0.118 4.118
10 C -0.053 4.053
11 C -0.155 4.155
12 C 0.117 3.883
13 F -0.135 7.135
14 C -0.196 4.196
15 C 0.127 3.873
16 F -0.138 7.138
17 C 0.079 3.921
18 C 0.162 3.838
19 H 0.082 0.918
20 N -0.724 5.724
21 C -0.230 4.230
22 H 0.084 0.916
23 C -0.074 4.074
24 N -0.970 5.970
25 Si 0.966 3.034
26 H -0.262 1.262
27 H -0.300 1.300
28 H -0.301 1.301
29 H 0.037 0.963
30 H 0.068 0.932
31 H 0.058 0.942
32 H 0.045 0.955
33 H 0.072 0.928
34 H 0.123 0.877
35 H 0.130 0.870
36 H 0.164 0.836
37 H 0.168 0.832
38 H 0.160 0.840
39 H 0.091 0.909
40 H 0.063 0.937
41 H 0.375 0.625
42 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.669 6.027 7.540 19.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.119 4.119
3 H 0.126 0.874
4 C -0.008 4.008
5 N -0.340 5.340
6 C 0.313 3.687
7 O -0.466 6.466
8 C -0.131 4.131
9 C -0.119 4.119
10 C -0.071 4.071
11 C -0.174 4.174
12 C 0.098 3.902
13 F -0.114 7.114
14 C -0.215 4.215
15 C 0.107 3.893
16 F -0.116 7.116
17 C -0.046 4.046
18 C 0.052 3.948
19 H 0.100 0.900
20 N -0.364 5.364
21 C -0.362 4.362
22 H 0.102 0.898
23 C -0.266 4.266
24 N -0.621 5.621
25 Si 0.797 3.203
26 H -0.186 1.186
27 H -0.228 1.228
28 H -0.229 1.229
29 H 0.057 0.943
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.063 0.937
33 H 0.090 0.910
34 H 0.141 0.859
35 H 0.148 0.852
36 H 0.182 0.818
37 H 0.186 0.814
38 H 0.177 0.823
39 H 0.109 0.891
40 H 0.081 0.919
41 H 0.208 0.792
42 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 16.731 6.058 8.029 19.521
hybrid contribution -0.523 -0.656 -0.337 0.904
sum 16.208 5.402 7.692 18.736
Atomic orbital electron populations
1.21472 0.93647 1.01311 1.01913 1.22618 0.96650 0.99267 0.93399
0.87363 1.22246 0.82841 0.97637 0.98040 1.48528 1.11794 1.65583
1.08136 1.20634 0.85657 0.76580 0.85824 1.90671 1.84075 1.55658
1.16172 1.20595 0.89594 1.06049 0.96884 1.19631 0.99086 0.93578
0.99618 1.21099 0.95363 0.95477 0.95157 1.21460 0.98203 1.00395
0.97335 1.17417 0.91709 0.93185 0.87882 1.91518 1.67590 1.94566
1.57703 1.21111 1.02728 0.97706 0.99974 1.17282 0.97476 0.78635
0.95877 1.91490 1.93546 1.36374 1.90224 1.23131 1.01238 1.02159
0.78079 1.21474 0.88516 0.88717 0.96143 0.89988 1.42640 1.46141
1.33985 1.13618 1.19676 1.16845 1.08230 0.91469 0.89769 1.25469
0.99782 1.00458 1.00936 1.69822 1.28969 1.28270 1.35001 0.85173
0.76944 0.77844 0.80382 1.18567 1.22779 1.22872 0.94342 0.91279
0.92340 0.93653 0.90981 0.85927 0.85216 0.81800 0.81414 0.82280
0.89083 0.91862 0.79155 0.94352
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.74 8.85 71.98 0.64 -3.11 16
2 C -0.10 -2.84 3.53 -9.33 -0.03 -2.87 16
3 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16
4 C 0.12 3.66 6.35 86.93 0.55 4.21 16
5 N -0.61 -18.83 3.32 -811.35 -2.70 -21.53 16
6 C 0.52 16.35 7.84 87.66 0.69 17.04 16
7 O -0.58 -22.43 16.20 -3.04 -0.05 -22.48 16
8 C -0.09 -2.08 4.75 29.10 0.14 -1.94 16
9 C -0.12 -2.69 4.43 -19.81 -0.09 -2.78 16
10 C -0.05 -1.00 9.66 22.26 0.22 -0.79 16
11 C -0.16 -2.70 10.02 22.32 0.22 -2.47 16
12 C 0.12 2.34 7.30 22.37 0.16 2.51 16
13 F -0.14 -2.72 17.27 44.97 0.78 -1.95 16
14 C -0.20 -4.13 10.01 22.36 0.22 -3.91 16
15 C 0.13 3.06 7.12 22.37 0.16 3.22 16
16 F -0.14 -3.61 16.66 44.97 0.75 -2.86 16
17 C 0.08 2.30 6.22 86.73 0.54 2.84 16
18 C 0.16 5.33 3.37 46.18 0.16 5.49 16
19 H 0.08 2.55 8.12 -2.39 -0.02 2.54 16
20 N -0.72 -32.05 4.61 -317.30 -1.46 -33.51 16
21 C -0.23 -11.41 9.98 84.03 0.84 -10.57 16
22 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16
23 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16
24 N -0.97 -56.56 13.06 21.65 0.28 -56.28 16
25 Si 0.97 43.46 29.55 68.60 2.03 45.48 16
26 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16
27 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16
28 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16
29 H 0.04 1.39 6.37 -2.39 -0.02 1.37 16
30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
32 H 0.05 1.66 7.99 -2.39 -0.02 1.64 16
33 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16
34 H 0.12 2.34 7.94 -2.38 -0.02 2.32 16
35 H 0.13 2.44 8.00 -2.39 -0.02 2.42 16
36 H 0.16 2.37 8.04 -2.91 -0.02 2.35 16
37 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16
38 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16
39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
40 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16
41 H 0.37 18.51 6.10 -92.71 -0.57 17.94 16
42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
Total: -1.00 -66.21 360.40 4.99 -61.22
By element:
Atomic # 1 Polarization: 28.05 SS G_CDS: 0.48 Total: 28.53 kcal
Atomic # 6 Polarization: -1.51 SS G_CDS: 4.88 Total: 3.37 kcal
Atomic # 7 Polarization: -107.44 SS G_CDS: -3.88 Total: -111.32 kcal
Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal
Atomic # 9 Polarization: -6.33 SS G_CDS: 1.53 Total: -4.80 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal
Total: -66.21 4.99 -61.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054680434.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.779 kcal
(2) G-P(sol) polarization free energy of solvation -66.207 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds