Wall clock time and date at job start Tue Mar 31 2020 14:53:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08996 * 110.64119 * 2 1
4 4 C 1.54341 * 111.00065 * 236.92548 * 2 1 3
5 5 N 1.47018 * 107.26395 * 219.59917 * 4 2 1
6 6 C 1.34778 * 125.64669 * 178.84553 * 5 4 2
7 7 O 1.21277 * 120.00104 * 359.72406 * 6 5 4
8 8 C 1.50708 * 119.99726 * 179.71726 * 6 5 4
9 9 C 1.50694 * 109.46736 * 180.02562 * 8 6 5
10 10 C 1.38233 * 119.98671 * 100.00310 * 9 8 6
11 11 C 1.38191 * 120.05084 * 179.97438 * 10 9 8
12 12 C 1.38491 * 120.02630 * 0.28397 * 11 10 9
13 13 F 1.35097 * 120.01430 * 179.74880 * 12 11 10
14 14 C 1.38408 * 119.97177 * 359.48296 * 12 11 10
15 15 C 1.38433 * 119.95015 * 0.49160 * 14 12 11
16 16 F 1.35102 * 120.01397 * 179.79013 * 15 14 12
17 17 C 1.47430 * 108.70482 * 358.59042 * 5 4 2
18 18 C 1.54912 * 104.83116 * 24.35010 * 17 5 4
19 19 H 1.09003 * 111.00282 * 204.87880 * 18 17 5
20 20 N 1.46504 * 111.00206 * 81.06799 * 18 17 5
21 21 C 1.36942 * 119.99746 * 86.44932 * 20 18 17
22 22 H 1.08001 * 120.00273 * 0.02562 * 21 20 18
23 23 C 1.38811 * 119.99828 * 179.97438 * 21 20 18
24 24 N 1.31619 * 119.99797 * 0.02562 * 23 21 20
25 25 Si 1.86799 * 120.00033 * 180.02562 * 23 21 20
26 26 H 1.48502 * 109.46931 * 0.02562 * 25 23 21
27 27 H 1.48494 * 109.47417 * 120.00433 * 25 23 21
28 28 H 1.48505 * 109.46859 * 240.00602 * 25 23 21
29 29 H 1.09001 * 109.47505 * 296.85813 * 1 2 3
30 30 H 1.09000 * 109.46937 * 56.85426 * 1 2 3
31 31 H 1.08996 * 109.47129 * 176.85624 * 1 2 3
32 32 H 1.08999 * 109.98692 * 100.13027 * 4 2 1
33 33 H 1.08992 * 109.77859 * 338.95836 * 4 2 1
34 34 H 1.09002 * 109.46552 * 60.00560 * 8 6 5
35 35 H 1.08994 * 109.47296 * 300.00729 * 8 6 5
36 36 H 1.07993 * 119.97364 * 359.97438 * 10 9 8
37 37 H 1.08002 * 119.98388 * 179.97438 * 11 10 9
38 38 H 1.08002 * 120.02149 * 180.25988 * 14 12 11
39 39 H 1.09000 * 110.37040 * 143.19269 * 17 5 4
40 40 H 1.09000 * 110.36350 * 265.40525 * 17 5 4
41 41 H 0.96989 * 119.99934 * 266.45434 * 20 18 17
42 42 H 0.97006 * 119.99948 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0200 0.0000
4 6 2.0831 -0.7863 -1.2074
5 7 3.2494 -1.5469 -0.7355
6 6 4.0004 -2.3785 -1.4846
7 8 3.7296 -2.5525 -2.6539
8 6 5.1766 -3.0919 -0.8692
9 6 5.8429 -3.9530 -1.9110
10 6 6.9891 -3.5096 -2.5438
11 6 7.6015 -4.2984 -3.4990
12 6 7.0640 -5.5318 -3.8277
13 9 7.6600 -6.3005 -4.7652
14 6 5.9191 -5.9788 -3.1913
15 6 5.3068 -5.1880 -2.2342
16 9 4.1868 -5.6213 -1.6152
17 6 3.4652 -1.2447 0.6913
18 6 2.0789 -0.7934 1.2151
19 1 2.1820 -0.1496 2.0886
20 7 1.2294 -1.9487 1.5150
21 6 1.3001 -2.5501 2.7433
22 1 1.9818 -2.1725 3.4910
23 6 0.4948 -3.6443 3.0276
24 7 -0.3364 -4.1042 2.1166
25 14 0.5907 -4.4642 4.7033
26 1 1.5951 -3.7614 5.5415
27 1 -0.7377 -4.3981 5.3636
28 1 0.9908 -5.8847 4.5372
29 1 -0.3634 0.4643 0.9168
30 1 -0.3633 0.5619 -0.8604
31 1 -0.3633 -1.0261 -0.0564
32 1 2.3848 -0.0959 -1.9951
33 1 1.3216 -1.4700 -1.5824
34 1 4.8318 -3.7179 -0.0462
35 1 5.8903 -2.3587 -0.4936
36 1 7.4063 -2.5460 -2.2915
37 1 8.4968 -3.9508 -3.9930
38 1 5.5017 -6.9424 -3.4439
39 1 3.7992 -2.1365 1.2217
40 1 4.1944 -0.4423 0.8030
41 1 0.6169 -2.2876 0.8436
42 1 -0.8989 -4.8691 2.3152
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054680440.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:53:06
Heat of formation + Delta-G solvation = -85.822179 kcal
Electronic energy + Delta-G solvation = -27594.549763 eV
Core-core repulsion = 23403.794462 eV
Total energy + Delta-G solvation = -4190.755300 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-49.13694 -48.90447 -39.98642 -38.89558 -37.44729 -33.88614 -32.93401 -32.20448
-30.91925 -30.50835 -28.00149 -27.67544 -25.59132 -23.90697 -23.32617 -22.44847
-21.67176 -19.27568 -19.01619 -18.25160 -17.53488 -17.32200 -16.73947 -16.14517
-15.92541 -15.90590 -15.38283 -15.27849 -14.99450 -14.50759 -14.41427 -14.28116
-13.98728 -13.70127 -13.14547 -13.02304 -12.91338 -12.69011 -12.25064 -12.07789
-11.99349 -11.92419 -11.69708 -11.56266 -11.44234 -11.13527 -10.95952 -10.76894
-10.49800 -10.27851 -9.95587 -9.70603 -9.64160 -9.16678 -9.06402 -8.68648
-8.24077 -7.05574 -5.85032 -3.15277 0.81200 0.90920 2.92759 3.11399
3.38019 3.43246 3.46415 3.48746 3.78225 4.31861 4.40756 4.48970
4.50816 4.68284 4.75342 4.96231 5.13054 5.15439 5.27338 5.33228
5.48960 5.52482 5.60433 5.66769 5.69102 5.74351 5.82498 5.89047
5.89856 5.95937 6.08837 6.15918 6.18609 6.31873 6.34871 6.47277
6.58924 6.64470 6.74498 6.89681 7.61925 7.89504 8.32500 8.47331
9.44552 9.99994 10.34363 11.36940
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.013313 B = 0.003651 C = 0.003113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2102.677049 B = 7667.739746 C = 8993.803609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.113 4.113
3 H 0.079 0.921
4 C 0.118 3.882
5 N -0.601 5.601
6 C 0.532 3.468
7 O -0.549 6.549
8 C -0.098 4.098
9 C -0.105 4.105
10 C -0.052 4.052
11 C -0.166 4.166
12 C 0.125 3.875
13 F -0.135 7.135
14 C -0.193 4.193
15 C 0.152 3.848
16 F -0.120 7.120
17 C 0.066 3.934
18 C 0.172 3.828
19 H 0.071 0.929
20 N -0.710 5.710
21 C -0.248 4.248
22 H 0.072 0.928
23 C -0.007 4.007
24 N -0.926 5.926
25 Si 0.905 3.095
26 H -0.280 1.280
27 H -0.291 1.291
28 H -0.291 1.291
29 H 0.060 0.940
30 H 0.044 0.956
31 H 0.068 0.932
32 H 0.058 0.942
33 H 0.067 0.933
34 H 0.112 0.888
35 H 0.107 0.893
36 H 0.142 0.858
37 H 0.141 0.859
38 H 0.148 0.852
39 H 0.080 0.920
40 H 0.056 0.944
41 H 0.387 0.613
42 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.468 4.800 -8.049 17.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.133 4.133
3 H 0.097 0.903
4 C -0.005 4.005
5 N -0.334 5.334
6 C 0.320 3.680
7 O -0.427 6.427
8 C -0.138 4.138
9 C -0.106 4.106
10 C -0.070 4.070
11 C -0.185 4.185
12 C 0.105 3.895
13 F -0.113 7.113
14 C -0.213 4.213
15 C 0.133 3.867
16 F -0.098 7.098
17 C -0.060 4.060
18 C 0.059 3.941
19 H 0.089 0.911
20 N -0.351 5.351
21 C -0.379 4.379
22 H 0.090 0.910
23 C -0.204 4.204
24 N -0.574 5.574
25 Si 0.736 3.264
26 H -0.205 1.205
27 H -0.218 1.218
28 H -0.218 1.218
29 H 0.079 0.921
30 H 0.063 0.937
31 H 0.087 0.913
32 H 0.076 0.924
33 H 0.085 0.915
34 H 0.130 0.870
35 H 0.125 0.875
36 H 0.160 0.840
37 H 0.159 0.841
38 H 0.165 0.835
39 H 0.099 0.901
40 H 0.075 0.925
41 H 0.223 0.777
42 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 14.337 4.535 -8.536 17.291
hybrid contribution -0.289 -0.981 0.664 1.219
sum 14.048 3.553 -7.872 16.491
Atomic orbital electron populations
1.21599 0.93467 1.02997 1.00917 1.22490 0.97091 0.98512 0.95181
0.90276 1.21936 0.87865 0.94290 0.96415 1.48285 1.29415 1.43851
1.11807 1.19896 0.83391 0.78753 0.85958 1.90685 1.71534 1.63930
1.16570 1.20564 0.96478 0.99087 0.97677 1.19497 0.96990 0.93877
1.00269 1.20723 0.93436 0.99138 0.93747 1.21097 1.02586 0.93798
1.01006 1.17267 0.92666 0.90152 0.89392 1.91513 1.82713 1.74666
1.62455 1.20998 0.97694 1.02813 0.99746 1.17148 0.83930 0.92721
0.92947 1.91603 1.48424 1.89380 1.80437 1.23455 1.01376 1.00755
0.80451 1.21347 0.88556 0.89935 0.94235 0.91135 1.42403 1.45345
1.32243 1.15091 1.19246 1.18667 1.09182 0.90823 0.90959 1.24752
0.98918 0.98822 0.97886 1.69671 1.27241 1.27089 1.33358 0.86157
0.77259 0.79300 0.83646 1.20484 1.21836 1.21848 0.92087 0.93683
0.91260 0.92380 0.91512 0.87013 0.87518 0.84022 0.84100 0.83464
0.90115 0.92537 0.77694 0.93403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.04 8.73 37.16 0.32 -1.72 16
2 C -0.11 -1.69 3.40 -88.78 -0.30 -1.99 16
3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
4 C 0.12 1.91 6.47 -3.06 -0.02 1.89 16
5 N -0.60 -10.06 3.33 -170.51 -0.57 -10.63 16
6 C 0.53 9.21 7.83 -10.98 -0.09 9.13 16
7 O -0.55 -11.23 16.27 5.56 0.09 -11.14 16
8 C -0.10 -1.34 4.56 -29.03 -0.13 -1.47 16
9 C -0.10 -1.40 4.43 -104.55 -0.46 -1.87 16
10 C -0.05 -0.55 9.66 -39.60 -0.38 -0.93 16
11 C -0.17 -1.67 10.02 -39.51 -0.40 -2.07 16
12 C 0.12 1.46 7.30 -39.43 -0.29 1.17 16
13 F -0.13 -1.57 17.27 2.25 0.04 -1.53 16
14 C -0.19 -2.48 10.01 -39.45 -0.39 -2.87 16
15 C 0.15 2.26 7.12 -39.43 -0.28 1.98 16
16 F -0.12 -2.11 16.66 2.25 0.04 -2.07 16
17 C 0.07 1.02 6.38 -2.52 -0.02 1.01 16
18 C 0.17 3.01 3.44 -65.78 -0.23 2.78 16
19 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16
20 N -0.71 -16.26 4.74 -51.35 -0.24 -16.50 16
21 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16
22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16
23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16
24 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16
25 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16
26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.07 1.28 6.37 -51.93 -0.33 0.95 16
32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
33 H 0.07 1.23 7.78 -51.93 -0.40 0.82 16
34 H 0.11 1.60 7.65 -51.93 -0.40 1.20 16
35 H 0.11 1.07 8.00 -51.93 -0.42 0.66 16
36 H 0.14 1.08 8.03 -52.49 -0.42 0.66 16
37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16
38 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16
39 H 0.08 1.36 7.48 -51.93 -0.39 0.97 16
40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.39 9.76 6.09 -40.82 -0.25 9.51 16
42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
LS Contribution 359.56 15.07 5.42 5.42
Total: -1.00 -31.68 359.56 -7.97 -39.65
By element:
Atomic # 1 Polarization: 14.00 SS G_CDS: -5.53 Total: 8.47 kcal
Atomic # 6 Polarization: 1.14 SS G_CDS: -2.91 Total: -1.77 kcal
Atomic # 7 Polarization: -53.44 SS G_CDS: -0.09 Total: -53.53 kcal
Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal
Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.60 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -31.68 -7.97 -39.65 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054680440.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.171 kcal
(2) G-P(sol) polarization free energy of solvation -31.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds