Wall clock time and date at job start Tue Mar 31 2020 15:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72270 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72118 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72153 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.50694 * 109.47244 * 180.02562 * 20 18 17 22 22 C 1.38262 * 119.99357 * 269.72742 * 21 20 18 23 23 C 1.38220 * 120.02760 * 179.76559 * 22 21 20 24 24 C 1.38241 * 120.01401 * 0.51055 * 23 22 21 25 25 C 1.38338 * 119.98269 * 359.74001 * 24 23 22 26 26 Cl 1.73596 * 120.01034 * 180.02562 * 25 24 23 27 27 C 1.38196 * 119.99355 * 89.99786 * 21 20 18 28 28 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 31 31 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 32 32 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 33 33 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 34 34 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 36 36 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 37 37 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 38 38 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 39 39 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 40 40 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 41 41 H 1.07995 * 119.98764 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99988 * 180.24949 * 23 22 21 43 43 H 1.07993 * 120.01100 * 179.72749 * 24 23 22 44 44 H 1.07997 * 120.00392 * 359.95922 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.6798 -1.9826 1.2700 15 1 7.8732 0.2544 1.7452 16 1 7.7258 -1.4731 3.4405 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 2.6990 0.2393 4.7415 22 6 3.8488 0.9684 4.9823 23 6 3.8940 1.8602 6.0374 24 6 2.7931 2.0159 6.8589 25 6 1.6442 1.2829 6.6215 26 17 0.2611 1.4784 7.6522 27 6 1.5977 0.3942 5.5619 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -0.2618 -2.1369 32 1 1.7515 -1.7716 -1.2055 33 1 3.6263 -0.6888 -3.4657 34 1 5.1507 -1.1479 -2.6701 35 1 3.7721 -2.2742 -2.6699 36 1 3.6646 -2.0586 0.2387 37 1 4.4079 -2.8955 1.5989 38 1 2.2489 -1.6318 1.1527 39 1 1.9758 -1.5506 3.8326 40 1 3.6479 -1.1214 3.3987 41 1 4.7108 0.8435 4.3439 42 1 4.7911 2.4324 6.2227 43 1 2.8300 2.7095 7.6858 44 1 0.7009 -0.1781 5.3758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135358243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:23 Heat of formation + Delta-G solvation = -17.991922 kcal Electronic energy + Delta-G solvation = -25965.089406 eV Core-core repulsion = 22329.072126 eV Total energy + Delta-G solvation = -3636.017279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.78083 -38.75649 -36.92430 -36.34350 -34.38268 -32.74823 -32.34244 -30.63880 -30.50504 -28.37980 -27.21772 -26.39591 -23.55827 -22.51710 -22.23562 -20.83066 -20.37535 -19.59695 -17.45999 -16.88753 -16.46902 -15.83970 -15.53721 -15.26051 -15.00606 -14.31319 -14.13509 -13.70136 -13.62705 -13.52158 -13.22842 -13.11486 -13.04729 -12.70459 -12.23835 -12.11207 -11.78494 -11.67978 -11.65632 -11.34427 -11.28205 -11.16359 -10.98131 -10.80876 -10.72018 -10.52747 -10.44402 -10.15919 -10.07246 -9.34644 -9.23919 -9.02161 -8.70414 -8.45726 -8.43432 -7.07075 -6.16587 -3.15934 1.36151 1.44153 2.20479 3.26926 3.47639 3.49269 3.62777 3.64017 3.99174 4.59431 4.85213 4.96916 5.00139 5.21782 5.28234 5.37171 5.46072 5.49314 5.53014 5.53670 5.58902 5.63892 5.77935 5.88322 5.91276 5.96337 5.98284 6.05420 6.14071 6.28528 6.29309 6.33995 6.35159 6.43007 6.49711 6.52774 6.76228 6.79432 6.95345 6.99156 7.09305 7.76465 8.09074 8.65935 8.83537 9.13457 9.98330 10.14925 11.29862 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.004431 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.139385 B = 6317.226142 C = 8178.994347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.082 0.918 4 C -0.134 4.134 5 C 0.175 3.825 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.727 5.727 9 C -0.314 4.314 10 H 0.062 0.938 11 C -0.043 4.043 12 N -0.944 5.944 13 Si 1.071 2.929 14 H -0.297 1.297 15 H -0.296 1.296 16 H -0.287 1.287 17 N -0.701 5.701 18 C 0.531 3.469 19 O -0.554 6.554 20 C -0.114 4.114 21 C -0.035 4.035 22 C -0.094 4.094 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.035 4.035 26 Cl -0.084 7.084 27 C -0.101 4.101 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.361 0.639 37 H 0.250 0.750 38 H 0.399 0.601 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.463 4.330 3.533 10.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.066 3.934 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.372 5.372 9 C -0.446 4.446 10 H 0.080 0.920 11 C -0.240 4.240 12 N -0.591 5.591 13 Si 0.903 3.097 14 H -0.225 1.225 15 H -0.223 1.223 16 H -0.213 1.213 17 N -0.353 5.353 18 C 0.318 3.682 19 O -0.433 6.433 20 C -0.153 4.153 21 C -0.036 4.036 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.138 4.138 25 C -0.061 4.061 26 Cl -0.055 7.055 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.195 0.805 37 H 0.061 0.939 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.492 5.029 4.701 10.175 hybrid contribution -1.164 -0.359 -1.178 1.695 sum -8.657 4.669 3.523 10.448 Atomic orbital electron populations 1.22202 0.96288 1.01559 1.01972 1.20780 0.92460 0.97700 0.84488 0.89947 1.22219 0.97784 1.00510 0.96786 1.20210 0.89553 0.95839 0.87846 0.93340 1.22407 1.01609 1.00229 0.98093 1.42479 1.19034 1.39995 1.35684 1.20064 0.94169 1.15975 1.14360 0.92022 1.25530 1.05296 0.97248 0.95943 1.70944 1.14134 1.30525 1.43516 0.83329 0.75087 0.74753 0.76556 1.22487 1.22299 1.21283 1.45948 1.66448 1.14019 1.08882 1.20203 0.76568 0.87013 0.84409 1.90646 1.51055 1.16034 1.85516 1.20817 1.06569 0.97160 0.90771 1.19319 0.93002 0.96505 0.94739 1.21273 0.98239 0.94759 0.96897 1.21065 0.98021 0.98480 0.94996 1.20947 0.92096 0.99979 1.00751 1.20776 0.89218 1.00988 0.95160 1.98340 1.43098 1.96885 1.67218 1.20835 0.98726 0.98359 0.94018 0.92872 0.92393 0.92157 0.90765 0.91899 0.94468 0.92822 0.93740 0.80461 0.93892 0.76451 0.88718 0.84978 0.84983 0.85202 0.85423 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 37.15 0.35 -1.79 16 2 C 0.15 2.36 2.57 -67.93 -0.17 2.19 16 3 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.13 -1.96 4.43 -26.73 -0.12 -2.08 16 5 C 0.18 3.19 2.89 -67.93 -0.20 2.99 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 8 N -0.73 -15.74 3.84 -53.43 -0.21 -15.95 16 9 C -0.31 -7.96 9.93 -15.06 -0.15 -8.11 16 10 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 11 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 12 N -0.94 -25.05 13.40 55.49 0.74 -24.30 16 13 Si 1.07 24.34 29.92 -169.99 -5.09 19.25 16 14 H -0.30 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 N -0.70 -11.92 3.80 -53.81 -0.20 -12.13 16 18 C 0.53 9.98 7.79 -10.98 -0.09 9.90 16 19 O -0.55 -11.92 15.70 5.56 0.09 -11.83 16 20 C -0.11 -1.96 5.83 -29.04 -0.17 -2.13 16 21 C -0.03 -0.59 4.37 -104.63 -0.46 -1.04 16 22 C -0.09 -1.56 9.70 -39.58 -0.38 -1.94 16 23 C -0.11 -1.52 10.05 -39.59 -0.40 -1.91 16 24 C -0.12 -1.61 9.83 -39.54 -0.39 -2.00 16 25 C -0.04 -0.51 6.32 -39.49 -0.25 -0.76 16 26 Cl -0.08 -1.08 28.96 -51.86 -1.50 -2.58 16 27 C -0.10 -1.55 9.49 -39.55 -0.38 -1.93 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.36 7.77 4.54 -40.82 -0.19 7.59 16 37 H 0.25 6.39 6.77 -40.82 -0.28 6.12 16 38 H 0.40 6.71 6.51 -40.82 -0.27 6.45 16 39 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 40 H 0.13 2.63 7.79 -51.93 -0.40 2.22 16 41 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -28.68 379.15 -9.63 -38.32 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -6.64 Total: 15.74 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.54 Total: -12.23 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.33 Total: -52.38 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.09 Total: 19.25 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.68 -9.63 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135358243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.325 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds