Wall clock time and date at job start Tue Mar 31 2020 15:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72270 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72118 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72153 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.50694 * 109.47244 * 180.02562 * 20 18 17 22 22 C 1.38262 * 119.99357 * 269.72742 * 21 20 18 23 23 C 1.38220 * 120.02760 * 179.76559 * 22 21 20 24 24 C 1.38241 * 120.01401 * 0.51055 * 23 22 21 25 25 C 1.38338 * 119.98269 * 359.74001 * 24 23 22 26 26 Cl 1.73596 * 120.01034 * 180.02562 * 25 24 23 27 27 C 1.38196 * 119.99355 * 89.99786 * 21 20 18 28 28 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 31 31 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 32 32 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 33 33 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 34 34 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 36 36 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 37 37 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 38 38 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 39 39 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 40 40 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 41 41 H 1.07995 * 119.98764 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99988 * 180.24949 * 23 22 21 43 43 H 1.07993 * 120.01100 * 179.72749 * 24 23 22 44 44 H 1.07997 * 120.00392 * 359.95922 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.6798 -1.9826 1.2700 15 1 7.8732 0.2544 1.7452 16 1 7.7258 -1.4731 3.4405 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 2.6990 0.2393 4.7415 22 6 3.8488 0.9684 4.9823 23 6 3.8940 1.8602 6.0374 24 6 2.7931 2.0159 6.8589 25 6 1.6442 1.2829 6.6215 26 17 0.2611 1.4784 7.6522 27 6 1.5977 0.3942 5.5619 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -0.2618 -2.1369 32 1 1.7515 -1.7716 -1.2055 33 1 3.6263 -0.6888 -3.4657 34 1 5.1507 -1.1479 -2.6701 35 1 3.7721 -2.2742 -2.6699 36 1 3.6646 -2.0586 0.2387 37 1 4.4079 -2.8955 1.5989 38 1 2.2489 -1.6318 1.1527 39 1 1.9758 -1.5506 3.8326 40 1 3.6479 -1.1214 3.3987 41 1 4.7108 0.8435 4.3439 42 1 4.7911 2.4324 6.2227 43 1 2.8300 2.7095 7.6858 44 1 0.7009 -0.1781 5.3758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135358243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:22 Heat of formation + Delta-G solvation = -32.156970 kcal Electronic energy + Delta-G solvation = -25965.703648 eV Core-core repulsion = 22329.072126 eV Total energy + Delta-G solvation = -3636.631522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14306 -40.00903 -38.40299 -37.44860 -35.97621 -34.29305 -33.76781 -32.00318 -31.69395 -30.05134 -28.48693 -27.65300 -25.46435 -23.68384 -23.49984 -22.14206 -21.78208 -21.05204 -19.34654 -18.09835 -17.88936 -17.15527 -16.84071 -16.67248 -16.40055 -15.88856 -15.65325 -15.43068 -14.95916 -14.75280 -14.53471 -14.41048 -14.29978 -13.96669 -13.56409 -13.47088 -13.18083 -12.97020 -12.88981 -12.70931 -12.56767 -12.46290 -12.40173 -12.27952 -12.16668 -11.88970 -11.82043 -11.77592 -11.62196 -11.10698 -10.86900 -10.83019 -9.88950 -9.87011 -9.64183 -8.90689 -8.20852 -5.13991 0.17275 0.28147 1.09827 1.60244 1.66048 1.78222 1.80876 2.34309 2.72685 2.75402 3.51600 3.63316 3.70346 3.84080 3.86633 4.06925 4.08127 4.14915 4.25303 4.30568 4.33915 4.45766 4.49134 4.61735 4.73217 4.75998 4.77475 4.79404 4.85201 4.97893 5.01113 5.03782 5.09269 5.19305 5.30783 5.33757 5.34386 5.53743 5.56920 5.71898 5.74562 5.81840 6.64633 6.68446 7.24115 7.38840 8.11902 8.25544 9.29174 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.004431 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.139385 B = 6317.226142 C = 8178.994347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.052 0.948 4 C -0.120 4.120 5 C 0.168 3.832 6 H 0.025 0.975 7 C -0.154 4.154 8 N -0.731 5.731 9 C -0.317 4.317 10 H 0.045 0.955 11 C -0.082 4.082 12 N -0.960 5.960 13 Si 1.104 2.896 14 H -0.293 1.293 15 H -0.290 1.290 16 H -0.290 1.290 17 N -0.695 5.695 18 C 0.527 3.473 19 O -0.586 6.586 20 C -0.105 4.105 21 C -0.054 4.054 22 C -0.120 4.120 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.040 4.040 26 Cl -0.067 7.067 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.361 0.639 37 H 0.248 0.752 38 H 0.400 0.600 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 4.538 3.453 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.071 0.929 4 C -0.158 4.158 5 C 0.060 3.940 6 H 0.043 0.957 7 C -0.213 4.213 8 N -0.376 5.376 9 C -0.449 4.449 10 H 0.063 0.937 11 C -0.276 4.276 12 N -0.608 5.608 13 Si 0.934 3.066 14 H -0.221 1.221 15 H -0.216 1.216 16 H -0.216 1.216 17 N -0.346 5.346 18 C 0.314 3.686 19 O -0.467 6.467 20 C -0.145 4.145 21 C -0.055 4.055 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.067 4.067 26 Cl -0.038 7.038 27 C -0.127 4.127 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.196 0.804 37 H 0.059 0.941 38 H 0.237 0.763 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.836 5.228 4.576 11.241 hybrid contribution -0.785 -0.371 -1.175 1.461 sum -9.621 4.857 3.401 11.301 Atomic orbital electron populations 1.22092 0.93793 1.02722 1.02260 1.20899 0.94330 0.96091 0.84420 0.92932 1.22128 0.94710 1.01553 0.97436 1.20398 0.92096 0.94146 0.87383 0.95703 1.22265 1.00026 1.00782 0.98276 1.42504 1.18081 1.40284 1.36714 1.20130 0.95465 1.15181 1.14097 0.93710 1.26334 1.07321 0.97434 0.96471 1.70987 1.14426 1.31285 1.44104 0.82861 0.72952 0.74911 0.75925 1.22071 1.21593 1.21592 1.45998 1.65696 1.13981 1.08968 1.20481 0.76204 0.86700 0.85224 1.90614 1.52713 1.17308 1.86071 1.20704 1.05185 0.97880 0.90701 1.19363 0.93850 0.97108 0.95133 1.21319 0.97889 0.96451 0.98172 1.21352 0.99347 0.97619 0.93900 1.21295 0.91252 0.99726 1.01020 1.20944 0.90141 1.00587 0.95020 1.98345 1.42221 1.96765 1.66501 1.20937 0.98577 0.98958 0.94236 0.91192 0.94240 0.89748 0.87455 0.90474 0.91194 0.95397 0.93332 0.80396 0.94072 0.76295 0.86573 0.87806 0.86900 0.82586 0.82471 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.48 71.98 0.68 -2.99 16 2 C 0.15 4.50 2.57 44.99 0.12 4.61 16 3 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.12 -3.24 4.43 30.59 0.14 -3.10 16 5 C 0.17 6.03 2.89 44.99 0.13 6.16 16 6 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 7 C -0.15 -4.97 9.49 71.98 0.68 -4.29 16 8 N -0.73 -31.96 3.84 -322.95 -1.24 -33.20 16 9 C -0.32 -16.40 9.93 84.03 0.83 -15.56 16 10 H 0.04 2.43 7.83 -2.91 -0.02 2.41 16 11 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.96 -51.75 13.40 21.65 0.29 -51.46 16 13 Si 1.10 50.09 29.92 68.60 2.05 52.15 16 14 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 17 N -0.70 -23.84 3.80 -442.55 -1.68 -25.52 16 18 C 0.53 20.36 7.79 87.65 0.68 21.04 16 19 O -0.59 -26.02 15.70 -3.02 -0.05 -26.06 16 20 C -0.11 -3.76 5.83 29.10 0.17 -3.59 16 21 C -0.05 -1.86 4.37 -19.87 -0.09 -1.94 16 22 C -0.12 -4.12 9.70 22.27 0.22 -3.90 16 23 C -0.10 -2.86 10.05 22.27 0.22 -2.64 16 24 C -0.11 -2.89 9.83 22.29 0.22 -2.67 16 25 C -0.04 -1.11 6.32 22.33 0.14 -0.97 16 26 Cl -0.07 -1.59 28.96 -2.72 -0.08 -1.67 16 27 C -0.11 -3.31 9.49 22.29 0.21 -3.10 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.36 15.66 4.54 -92.71 -0.42 15.24 16 37 H 0.25 12.94 6.77 -92.71 -0.63 12.31 16 38 H 0.40 13.50 6.51 -92.71 -0.60 12.90 16 39 H 0.12 3.48 8.08 -2.39 -0.02 3.46 16 40 H 0.10 4.35 7.79 -2.39 -0.02 4.34 16 41 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -63.20 379.15 4.24 -58.96 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: 0.12 Total: 43.60 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.83 Total: -16.79 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -2.63 Total: -110.18 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.15 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -63.20 4.24 -58.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135358243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -63.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds