Wall clock time and date at job start Tue Mar 31 2020 15:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00447 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00208 * 179.97438 * 9 8 7 12 12 S 1.80994 * 109.47107 * 179.97438 * 11 9 8 13 13 C 1.76198 * 99.99968 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99971 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00195 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00090 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47448 * 89.99613 * 17 15 13 19 19 H 1.48495 * 109.47320 * 209.99909 * 17 15 13 20 20 H 1.48502 * 109.47148 * 330.00047 * 17 15 13 21 21 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 22 22 C 1.38390 * 119.99946 * 274.72514 * 21 2 1 23 23 N 1.32123 * 119.99505 * 179.78013 * 22 21 2 24 24 C 1.32156 * 119.99819 * 0.49601 * 23 22 21 25 25 C 1.38344 * 120.00391 * 359.73410 * 24 23 22 26 26 N 1.32120 * 119.99906 * 94.99885 * 21 2 1 27 27 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 28 28 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 30 30 H 1.00894 * 111.00528 * 208.95313 * 4 2 1 31 31 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 32 32 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 33 33 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 34 34 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 35 35 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 36 36 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 37 37 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 38 38 H 1.09001 * 109.47324 * 300.00411 * 11 9 8 39 39 H 1.09004 * 109.47043 * 60.00043 * 11 9 8 40 40 H 0.96997 * 120.00534 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.00078 * 0.02562 * 22 21 2 42 42 H 1.08001 * 119.99454 * 179.71417 * 24 23 22 43 43 H 1.07995 * 119.99840 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6612 0.4199 -4.7694 8 7 3.1526 -0.3036 -5.9446 9 6 3.2932 0.3385 -7.1213 10 8 3.0123 1.5152 -7.2072 11 6 3.7993 -0.4056 -8.3300 12 16 3.8757 0.7216 -9.7440 13 6 4.4801 -0.3789 -10.9802 14 1 4.6814 -1.4107 -10.7330 15 6 4.6965 0.0800 -12.2722 16 7 5.1485 -0.7420 -13.1956 17 14 4.3478 1.8645 -12.7002 18 1 5.5703 2.6762 -12.4729 19 1 3.9468 1.9623 -14.1266 20 1 3.2488 2.3739 -11.8411 21 6 2.0324 -0.7104 1.2306 22 6 2.1699 -0.0186 2.4212 23 7 2.6062 -0.6425 3.5010 24 6 2.9205 -1.9248 3.4416 25 6 2.7875 -2.6152 2.2502 26 7 2.3465 -1.9923 1.1713 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.9174 -1.1205 -1.0287 31 1 2.7589 1.0461 -2.1182 32 1 1.0871 0.6163 -2.5525 33 1 3.5905 -0.9273 -3.3690 34 1 1.9185 -1.3566 -3.8029 35 1 1.6660 0.8143 -4.9750 36 1 3.3381 1.2431 -4.5406 37 1 3.3769 -1.2449 -5.8759 38 1 4.7948 -0.7989 -8.1241 39 1 3.1233 -1.2296 -8.5588 40 1 5.2994 -0.4214 -14.0986 41 1 1.9169 1.0303 2.4687 42 1 3.2815 -2.4336 4.3232 43 1 3.0440 -3.6631 2.2018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154809342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:28 Heat of formation + Delta-G solvation = 5.428928 kcal Electronic energy + Delta-G solvation = -22993.236107 eV Core-core repulsion = 19392.570890 eV Total energy + Delta-G solvation = -3600.665218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69074 -39.29593 -37.84463 -35.52853 -34.53289 -33.19842 -32.43102 -31.22720 -29.90958 -28.65086 -25.76310 -25.57254 -25.22640 -24.13170 -21.82592 -21.42069 -20.37786 -18.10957 -17.86908 -17.60760 -16.98982 -16.31790 -16.24431 -16.05812 -15.58549 -15.30142 -14.99112 -14.81492 -14.69778 -14.11828 -13.85376 -13.61098 -13.28823 -13.10303 -12.87231 -12.79410 -12.59319 -12.12248 -12.06445 -11.89979 -11.78415 -11.66262 -11.65105 -11.25611 -11.13102 -11.00026 -10.59451 -9.85464 -9.83420 -9.61129 -9.51244 -9.01361 -8.95518 -8.86503 -8.49242 -6.90962 -6.28189 -3.99868 0.18057 0.59094 2.76922 2.99244 3.11923 3.26151 3.33835 3.38310 3.49431 3.51491 3.69253 3.75441 4.04877 4.15032 4.33936 4.55935 4.65108 4.67042 4.69342 4.74205 4.81283 4.86460 4.90114 4.93667 5.10874 5.20612 5.23379 5.33206 5.35809 5.40112 5.55189 5.73816 5.77045 5.81578 5.88299 5.94183 6.03017 6.45543 6.55987 6.75929 6.92569 7.24311 7.62819 7.94862 8.42495 8.50635 9.18020 10.81042 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.001542 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.819966 B =18159.147978 C =18551.388065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.139 3.861 3 H 0.066 0.934 4 N -0.672 5.672 5 C 0.060 3.940 6 C -0.128 4.128 7 C 0.123 3.877 8 N -0.737 5.737 9 C 0.530 3.470 10 O -0.521 6.521 11 C -0.124 4.124 12 S -0.143 6.143 13 C -0.522 4.522 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.076 3.924 22 C 0.055 3.945 23 N -0.436 5.436 24 C 0.042 3.958 25 C 0.054 3.946 26 N -0.418 5.418 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.349 0.651 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -2.587 34.584 35.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.084 0.916 4 N -0.304 5.304 5 C -0.070 4.070 6 C -0.166 4.166 7 C -0.002 4.002 8 N -0.391 5.391 9 C 0.316 3.684 10 O -0.396 6.396 11 C -0.275 4.275 12 S 0.084 5.916 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.065 4.065 22 C -0.106 4.106 23 N -0.150 5.150 24 C -0.117 4.117 25 C -0.106 4.106 26 N -0.133 5.133 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.186 0.814 42 H 0.187 0.813 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.747 -0.894 34.094 34.975 hybrid contribution 1.254 -0.804 0.040 1.490 sum -6.492 -1.698 34.134 34.788 Atomic orbital electron populations 1.21796 0.92477 1.03190 1.02034 1.20391 0.96730 0.94656 0.85462 0.91591 1.60383 1.34472 1.32436 1.03143 1.21953 1.01314 0.93642 0.90075 1.21721 1.02281 0.99119 0.93478 1.21192 1.00029 0.94762 0.84188 1.45944 1.69385 1.14167 1.09628 1.20283 0.77084 0.87456 0.83598 1.90697 1.48680 1.15843 1.84348 1.23280 1.04458 1.03247 0.96500 1.84779 1.87151 1.17192 1.02508 1.22325 1.50382 0.98607 0.95617 0.89380 1.24712 0.93341 0.98187 0.95046 1.69936 1.43277 1.35451 1.03040 0.86731 0.81104 0.84825 0.79173 1.19227 1.19937 1.15922 1.22376 0.96110 0.91468 0.96508 1.23577 0.96447 1.01679 0.88878 1.68485 1.07346 1.09678 1.29539 1.23836 0.97168 0.91238 0.99467 1.23886 0.95582 1.01855 0.89260 1.68288 1.06737 1.08347 1.29893 0.91306 0.91477 0.92341 0.83160 0.94799 0.90289 0.91380 0.90086 0.91492 0.91791 0.76601 0.88508 0.88419 0.91950 0.81439 0.81259 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.40 37.16 0.35 -0.43 16 2 C 0.14 0.83 2.88 -68.86 -0.20 0.63 16 3 H 0.07 0.32 7.77 -51.93 -0.40 -0.08 16 4 N -0.67 -4.71 6.06 -107.94 -0.65 -5.37 16 5 C 0.06 0.40 5.48 -3.82 -0.02 0.38 16 6 C -0.13 -0.95 5.59 -26.73 -0.15 -1.10 16 7 C 0.12 1.30 5.67 -4.05 -0.02 1.27 16 8 N -0.74 -9.24 5.56 -60.30 -0.33 -9.58 16 9 C 0.53 9.43 7.85 -10.99 -0.09 9.35 16 10 O -0.52 -11.31 15.86 5.55 0.09 -11.23 16 11 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 12 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 13 C -0.52 -15.11 10.04 30.94 0.31 -14.79 16 14 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 15 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 16 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 17 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 21 C 0.08 0.52 5.70 -82.41 -0.47 0.05 16 22 C 0.05 0.34 10.90 -17.37 -0.19 0.15 16 23 N -0.44 -3.17 10.50 -13.06 -0.14 -3.31 16 24 C 0.04 0.22 11.22 -17.37 -0.20 0.03 16 25 C 0.05 0.29 11.22 -17.37 -0.20 0.10 16 26 N -0.42 -3.16 9.46 -9.29 -0.09 -3.24 16 27 H 0.07 0.38 7.45 -51.93 -0.39 -0.01 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.35 2.59 7.86 -39.29 -0.31 2.28 16 31 H 0.03 0.22 8.06 -51.93 -0.42 -0.20 16 32 H 0.08 0.53 7.44 -51.93 -0.39 0.14 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -36.11 378.96 -8.57 -44.68 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.48 Total: 0.52 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.74 Total: -3.84 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.44 Total: -47.36 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.11 -8.57 -44.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154809342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.105 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds