Wall clock time and date at job start Tue Mar 31 2020 15:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00447 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00208 * 179.97438 * 9 8 7 12 12 S 1.80994 * 109.47107 * 179.97438 * 11 9 8 13 13 C 1.76198 * 99.99968 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99971 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00195 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00090 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47448 * 89.99613 * 17 15 13 19 19 H 1.48495 * 109.47320 * 209.99909 * 17 15 13 20 20 H 1.48502 * 109.47148 * 330.00047 * 17 15 13 21 21 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 22 22 C 1.38390 * 119.99946 * 274.72514 * 21 2 1 23 23 N 1.32123 * 119.99505 * 179.78013 * 22 21 2 24 24 C 1.32156 * 119.99819 * 0.49601 * 23 22 21 25 25 C 1.38344 * 120.00391 * 359.73410 * 24 23 22 26 26 N 1.32120 * 119.99906 * 94.99885 * 21 2 1 27 27 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 28 28 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 30 30 H 1.00894 * 111.00528 * 208.95313 * 4 2 1 31 31 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 32 32 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 33 33 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 34 34 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 35 35 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 36 36 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 37 37 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 38 38 H 1.09001 * 109.47324 * 300.00411 * 11 9 8 39 39 H 1.09004 * 109.47043 * 60.00043 * 11 9 8 40 40 H 0.96997 * 120.00534 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.00078 * 0.02562 * 22 21 2 42 42 H 1.08001 * 119.99454 * 179.71417 * 24 23 22 43 43 H 1.07995 * 119.99840 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6612 0.4199 -4.7694 8 7 3.1526 -0.3036 -5.9446 9 6 3.2932 0.3385 -7.1213 10 8 3.0123 1.5152 -7.2072 11 6 3.7993 -0.4056 -8.3300 12 16 3.8757 0.7216 -9.7440 13 6 4.4801 -0.3789 -10.9802 14 1 4.6814 -1.4107 -10.7330 15 6 4.6965 0.0800 -12.2722 16 7 5.1485 -0.7420 -13.1956 17 14 4.3478 1.8645 -12.7002 18 1 5.5703 2.6762 -12.4729 19 1 3.9468 1.9623 -14.1266 20 1 3.2488 2.3739 -11.8411 21 6 2.0324 -0.7104 1.2306 22 6 2.1699 -0.0186 2.4212 23 7 2.6062 -0.6425 3.5010 24 6 2.9205 -1.9248 3.4416 25 6 2.7875 -2.6152 2.2502 26 7 2.3465 -1.9923 1.1713 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.9174 -1.1205 -1.0287 31 1 2.7589 1.0461 -2.1182 32 1 1.0871 0.6163 -2.5525 33 1 3.5905 -0.9273 -3.3690 34 1 1.9185 -1.3566 -3.8029 35 1 1.6660 0.8143 -4.9750 36 1 3.3381 1.2431 -4.5406 37 1 3.3769 -1.2449 -5.8759 38 1 4.7948 -0.7989 -8.1241 39 1 3.1233 -1.2296 -8.5588 40 1 5.2994 -0.4214 -14.0986 41 1 1.9169 1.0303 2.4687 42 1 3.2815 -2.4336 4.3232 43 1 3.0440 -3.6631 2.2018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154809342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:27 Heat of formation + Delta-G solvation = -22.636099 kcal Electronic energy + Delta-G solvation = -22994.453098 eV Core-core repulsion = 19392.570890 eV Total energy + Delta-G solvation = -3601.882208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -42.10523 -40.64262 -38.40152 -36.45796 -35.06257 -34.67052 -33.92796 -32.03133 -30.81100 -29.57345 -27.85837 -26.25359 -25.71316 -24.77754 -22.53046 -21.92246 -21.65659 -19.86859 -18.55119 -18.08728 -17.79398 -17.39929 -17.26822 -17.02285 -16.96598 -16.40183 -15.87808 -15.77123 -15.54010 -15.30023 -14.91684 -14.79174 -14.54163 -14.02123 -13.96553 -13.53700 -13.34425 -13.25988 -13.13300 -13.00337 -12.70061 -12.56810 -12.43290 -12.40151 -12.29008 -12.13908 -11.85776 -11.76009 -11.16812 -11.01143 -10.53576 -10.23118 -10.12571 -10.03174 -9.36855 -8.99452 -8.51278 -6.22240 -0.21324 0.15640 0.99630 1.31779 1.47354 1.56608 1.57048 2.22284 2.26851 2.70732 2.72238 2.86976 2.98118 3.02928 3.37736 3.63959 3.76375 3.85772 4.02987 4.11308 4.19681 4.21564 4.24234 4.35880 4.38877 4.44753 4.47933 4.56555 4.57398 4.70895 4.74796 4.86161 4.94332 5.18080 5.21926 5.31772 5.42457 5.44727 5.70920 5.99334 6.11634 6.34559 6.39726 6.48545 6.83076 6.93887 7.20234 8.61097 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.001542 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.819966 B =18159.147978 C =18551.388065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.139 3.861 3 H 0.080 0.920 4 N -0.678 5.678 5 C 0.063 3.937 6 C -0.113 4.113 7 C 0.123 3.877 8 N -0.712 5.712 9 C 0.534 3.466 10 O -0.565 6.565 11 C -0.112 4.112 12 S -0.177 6.177 13 C -0.530 4.530 14 H 0.062 0.938 15 C 0.046 3.954 16 N -0.917 5.917 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.259 1.259 20 H -0.237 1.237 21 C 0.067 3.933 22 C 0.048 3.952 23 N -0.463 5.463 24 C 0.041 3.959 25 C 0.050 3.950 26 N -0.443 5.443 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.346 0.654 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.417 0.583 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.277 0.723 41 H 0.187 0.813 42 H 0.198 0.802 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -2.473 36.458 37.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.028 3.972 3 H 0.097 0.903 4 N -0.311 5.311 5 C -0.066 4.066 6 C -0.151 4.151 7 C -0.001 4.001 8 N -0.366 5.366 9 C 0.319 3.681 10 O -0.443 6.443 11 C -0.263 4.263 12 S 0.050 5.950 13 C -0.678 4.678 14 H 0.080 0.920 15 C -0.159 4.159 16 N -0.555 5.555 17 Si 0.737 3.263 18 H -0.187 1.187 19 H -0.183 1.183 20 H -0.161 1.161 21 C -0.074 4.074 22 C -0.112 4.112 23 N -0.177 5.177 24 C -0.118 4.118 25 C -0.110 4.110 26 N -0.159 5.159 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.204 0.796 42 H 0.215 0.785 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.003 -0.822 36.004 36.891 hybrid contribution 1.337 -0.990 -0.365 1.704 sum -6.666 -1.812 35.638 36.301 Atomic orbital electron populations 1.21757 0.92415 1.02142 1.02728 1.20438 0.96699 0.95154 0.84892 0.90263 1.60369 1.34339 1.32754 1.03603 1.21895 1.01441 0.93584 0.89698 1.21582 1.02919 0.98297 0.92322 1.21326 0.99373 0.95272 0.84130 1.45748 1.67378 1.14936 1.08537 1.19961 0.76999 0.86750 0.84396 1.90687 1.51028 1.17539 1.85080 1.23279 1.06171 1.02220 0.94617 1.84701 1.86955 1.18850 1.04515 1.22472 1.50220 0.98143 0.96955 0.91953 1.25564 0.93177 1.02139 0.95053 1.70014 1.44357 1.37393 1.03703 0.85861 0.80993 0.79954 0.79529 1.18692 1.18295 1.16090 1.22463 0.96533 0.91487 0.96873 1.23868 0.96210 1.02564 0.88570 1.68516 1.08278 1.10773 1.30142 1.24318 0.96234 0.90777 1.00461 1.24339 0.94892 1.02962 0.88830 1.68272 1.07589 1.08934 1.31088 0.91141 0.93302 0.91125 0.83448 0.94352 0.90208 0.90489 0.89950 0.92083 0.92257 0.74599 0.86819 0.86792 0.91364 0.79645 0.78541 0.78619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.40 71.98 0.68 -0.69 16 2 C 0.14 1.49 2.88 44.17 0.13 1.61 16 3 H 0.08 0.63 7.77 -2.39 -0.02 0.61 16 4 N -0.68 -8.52 6.06 -495.42 -3.00 -11.52 16 5 C 0.06 0.73 5.48 86.31 0.47 1.21 16 6 C -0.11 -1.43 5.59 30.60 0.17 -1.26 16 7 C 0.12 2.36 5.67 86.38 0.49 2.85 16 8 N -0.71 -16.25 5.56 -463.06 -2.57 -18.82 16 9 C 0.53 18.18 7.85 87.66 0.69 18.87 16 10 O -0.56 -24.09 15.86 -3.04 -0.05 -24.14 16 11 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 12 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 13 C -0.53 -30.98 10.04 67.96 0.68 -30.30 16 14 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 15 C 0.05 2.71 5.50 84.86 0.47 3.18 16 16 N -0.92 -55.91 13.97 21.65 0.30 -55.60 16 17 Si 0.91 45.09 27.74 68.60 1.90 46.99 16 18 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 21 C 0.07 0.84 5.70 42.55 0.24 1.08 16 22 C 0.05 0.55 10.90 84.69 0.92 1.47 16 23 N -0.46 -6.21 10.50 -195.22 -2.05 -8.26 16 24 C 0.04 0.37 11.22 84.67 0.95 1.32 16 25 C 0.05 0.47 11.22 84.67 0.95 1.42 16 26 N -0.44 -6.25 9.46 -183.29 -1.73 -7.99 16 27 H 0.07 0.69 7.45 -2.39 -0.02 0.67 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.35 4.65 7.86 -89.70 -0.71 3.94 16 31 H 0.04 0.42 8.06 -2.39 -0.02 0.40 16 32 H 0.08 0.93 7.44 -2.39 -0.02 0.91 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.42 6.86 8.47 -92.70 -0.79 6.07 16 38 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 42 H 0.20 0.44 8.06 -2.91 -0.02 0.41 16 43 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -78.28 378.96 -1.47 -79.75 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.50 Total: 12.60 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 7.28 Total: -3.00 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -9.06 Total: -102.20 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -78.28 -1.47 -79.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154809342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.111 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds