Wall clock time and date at job start Tue Mar 31 2020 14:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47060 * 2 1 4 4 N 1.46898 * 109.47233 * 120.00665 * 2 1 3 5 5 C 1.50706 * 109.46799 * 240.00048 * 2 1 3 6 6 C 1.38819 * 119.74044 * 279.72688 * 5 2 1 7 7 C 1.37772 * 120.66020 * 180.27678 * 6 5 2 8 8 C 1.39082 * 119.77844 * 0.02562 * 7 6 5 9 9 C 1.40679 * 119.34765 * 359.97438 * 8 7 6 10 10 C 1.46533 * 106.07013 * 179.97438 * 9 8 7 11 11 C 1.34227 * 107.04795 * 0.02562 * 10 9 8 12 12 N 1.37021 * 109.91944 * 359.97438 * 11 10 9 13 13 C 1.40068 * 125.09275 * 180.02562 * 12 11 10 14 14 C 1.39244 * 119.92994 * 130.00008 * 13 12 11 15 15 C 1.38721 * 120.40296 * 179.97438 * 14 13 12 16 16 F 1.35098 * 119.86271 * 179.97438 * 15 14 13 17 17 C 1.37908 * 120.26571 * 359.97438 * 15 14 13 18 18 C 1.40706 * 119.86313 * 359.97438 * 17 15 14 19 19 C 1.41409 * 120.19559 * 179.97438 * 18 17 15 20 20 H 1.08009 * 119.99763 * 204.46677 * 19 18 17 21 21 C 1.39929 * 120.00571 * 24.47467 * 19 18 17 22 22 N 1.30834 * 119.99760 * 17.87687 * 21 19 18 23 23 Si 1.86791 * 120.00282 * 197.88305 * 21 19 18 24 24 H 1.48496 * 109.47383 * 89.99652 * 23 21 19 25 25 H 1.48498 * 109.47333 * 209.99539 * 23 21 19 26 26 H 1.48497 * 109.47222 * 329.99567 * 23 21 19 27 27 C 1.38247 * 119.93325 * 309.72447 * 13 12 11 28 28 C 1.36650 * 119.73186 * 100.00159 * 5 2 1 29 29 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46408 * 299.99836 * 1 2 3 31 31 H 1.08999 * 109.46767 * 59.99625 * 1 2 3 32 32 H 1.00903 * 111.00292 * 59.99467 * 4 2 1 33 33 H 1.00896 * 110.99908 * 183.95605 * 4 2 1 34 34 H 1.07995 * 119.66528 * 0.25343 * 6 5 2 35 35 H 1.08001 * 120.11199 * 179.97438 * 7 6 5 36 36 H 1.08000 * 126.47358 * 179.97438 * 10 9 8 37 37 H 1.08003 * 125.03922 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.80027 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.06909 * 179.97438 * 17 15 14 40 40 H 0.96998 * 119.99772 * 180.02562 * 22 21 19 41 41 H 1.07995 * 120.13862 * 0.02562 * 27 13 12 42 42 H 1.08002 * 120.11966 * 359.70185 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0323 -0.7104 -1.2305 6 6 2.0698 -2.0979 -1.2576 7 6 2.5307 -2.7666 -2.3704 8 6 2.9638 -2.0468 -3.4789 9 6 2.9238 -0.6409 -3.4466 10 6 3.4384 -0.1906 -4.7426 11 6 3.7438 -1.2907 -5.4485 12 7 3.4673 -2.4111 -4.7098 13 6 3.6664 -3.7290 -5.1404 14 6 4.3535 -4.6285 -4.3295 15 6 4.5559 -5.9361 -4.7460 16 9 5.2245 -6.7996 -3.9507 17 6 4.0773 -6.3581 -5.9686 18 6 3.3805 -5.4588 -6.7965 19 6 2.8872 -5.8838 -8.0518 20 1 2.7174 -5.1626 -8.8376 21 6 2.6188 -7.2388 -8.2758 22 7 2.4824 -8.0549 -7.2623 23 14 2.4554 -7.8823 -10.0217 24 1 3.7861 -8.3200 -10.5146 25 1 1.5180 -9.0338 -10.0392 26 1 1.9324 -6.8049 -10.8996 27 6 3.1755 -4.1355 -6.3671 28 6 2.4525 0.0164 -2.3087 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6962 -1.6481 1.2226 33 1 3.0262 -0.6502 1.2558 34 1 1.7347 -2.6585 -0.3976 35 1 2.5565 -3.8463 -2.3818 36 1 3.5499 0.8330 -5.0686 37 1 4.1476 -1.2924 -6.4502 38 1 4.7312 -4.3062 -3.3704 39 1 4.2370 -7.3768 -6.2899 40 1 2.2968 -8.9942 -7.4177 41 1 2.6390 -3.4389 -6.9943 42 1 2.4201 1.0956 -2.2806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162914147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:10 Heat of formation + Delta-G solvation = 24.240036 kcal Electronic energy + Delta-G solvation = -26010.734829 eV Core-core repulsion = 22255.521409 eV Total energy + Delta-G solvation = -3755.213420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.89202 -41.24883 -38.43778 -37.30337 -34.77643 -34.02386 -32.17144 -30.25592 -29.94827 -28.83458 -28.39733 -27.42038 -25.75866 -23.23577 -22.48358 -21.91935 -21.19259 -19.95905 -19.64476 -18.21310 -16.59700 -16.32875 -16.03416 -15.67056 -15.39470 -15.19495 -15.04905 -14.74164 -14.57462 -14.35798 -14.07804 -13.64176 -13.37692 -13.07327 -12.95228 -12.86496 -12.38574 -12.30431 -12.11112 -11.87780 -11.78223 -11.43522 -11.31338 -11.31034 -11.15776 -10.76336 -10.67009 -10.57193 -10.39591 -10.05684 -9.53297 -9.41096 -8.93808 -8.08880 -7.83874 -7.77493 -7.18608 -7.04036 -4.77848 1.33487 1.69850 2.31848 2.37296 2.89340 2.92693 2.94150 3.10309 3.24178 3.69224 4.04921 4.19902 4.52305 4.72970 4.94316 5.09877 5.11733 5.17624 5.22101 5.32760 5.48951 5.58640 5.68294 5.74293 5.84223 5.93891 5.97714 6.01510 6.08596 6.14957 6.22624 6.26777 6.50981 6.59677 6.60829 6.71369 6.82927 6.85821 6.99527 7.05461 7.06902 7.25876 7.33023 7.35438 7.51757 7.60746 7.75569 7.97207 8.21628 8.46959 8.47881 9.82968 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002989 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.664739 B = 9365.132992 C = 9809.218555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.134 3.866 3 H 0.083 0.917 4 N -0.842 5.842 5 C -0.153 4.153 6 C -0.109 4.109 7 C -0.108 4.108 8 C 0.103 3.897 9 C -0.107 4.107 10 C -0.219 4.219 11 C 0.069 3.931 12 N -0.418 5.418 13 C 0.163 3.837 14 C -0.282 4.282 15 C 0.124 3.876 16 F -0.160 7.160 17 C -0.198 4.198 18 C 0.139 3.861 19 C -0.447 4.447 20 H 0.087 0.913 21 C 0.074 3.926 22 N -0.777 5.777 23 Si 0.916 3.084 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.228 4.228 28 C -0.068 4.068 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.339 0.661 33 H 0.342 0.658 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.288 0.712 41 H 0.107 0.893 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 10.034 6.292 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.023 3.977 3 H 0.101 0.899 4 N -0.370 5.370 5 C -0.156 4.156 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.003 4.003 9 C -0.111 4.111 10 C -0.244 4.244 11 C -0.056 4.056 12 N -0.094 5.094 13 C 0.074 3.926 14 C -0.303 4.303 15 C 0.104 3.896 16 F -0.139 7.139 17 C -0.218 4.218 18 C 0.135 3.865 19 C -0.475 4.475 20 H 0.105 0.895 21 C -0.147 4.147 22 N -0.400 5.400 23 Si 0.740 3.260 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.249 4.249 28 C -0.088 4.088 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.185 0.815 38 H 0.124 0.876 39 H 0.152 0.848 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.261 10.006 6.689 12.102 hybrid contribution 0.529 -1.312 -1.394 1.986 sum -0.732 8.694 5.296 10.206 Atomic orbital electron populations 1.21793 0.94006 1.02193 1.01738 1.20299 0.95350 0.97144 0.84945 0.89864 1.59102 1.16436 1.21548 1.39919 1.20158 1.03899 0.93995 0.97517 1.20443 1.01471 0.93479 0.97472 1.20178 1.01470 0.99674 0.91516 1.18321 1.01016 0.93575 0.87406 1.19191 1.04624 0.91886 0.95444 1.21567 1.11103 0.97815 0.93905 1.21942 1.01577 0.84358 0.97752 1.41547 1.51497 1.04613 1.11753 1.17110 0.99309 0.80975 0.95203 1.19999 1.14050 0.93417 1.02880 1.17310 0.95744 0.86560 0.89992 1.91364 1.78850 1.69794 1.73900 1.21398 1.03842 1.02569 0.94017 1.17151 0.87839 0.89282 0.92226 1.19650 1.36936 0.93039 0.97855 0.89456 1.26037 0.92173 0.96790 0.99663 1.69797 1.31165 1.06179 1.32890 0.86159 0.79328 0.79119 0.81404 1.18885 1.19963 1.18274 1.20934 1.08988 0.98337 0.96593 1.19990 0.98594 0.98786 0.91385 0.92686 0.92032 0.92140 0.84739 0.84590 0.86539 0.85905 0.83716 0.81530 0.87596 0.84781 0.90095 0.87518 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.47 37.16 0.35 -1.03 16 2 C 0.13 1.41 3.58 -68.86 -0.25 1.16 16 3 H 0.08 0.83 7.97 -51.93 -0.41 0.42 16 4 N -0.84 -8.21 9.05 -5.65 -0.05 -8.26 16 5 C -0.15 -1.97 4.91 -104.98 -0.52 -2.49 16 6 C -0.11 -1.53 9.26 -39.54 -0.37 -1.89 16 7 C -0.11 -1.85 9.55 -39.44 -0.38 -2.22 16 8 C 0.10 1.89 6.58 -83.91 -0.55 1.34 16 9 C -0.11 -1.75 6.37 -105.12 -0.67 -2.42 16 10 C -0.22 -3.30 11.08 -37.65 -0.42 -3.72 16 11 C 0.07 1.14 10.94 -16.65 -0.18 0.96 16 12 N -0.42 -8.07 2.89 -58.56 -0.17 -8.24 16 13 C 0.16 3.53 5.89 -83.72 -0.49 3.04 16 14 C -0.28 -6.25 8.86 -39.03 -0.35 -6.60 16 15 C 0.12 2.90 7.28 -39.52 -0.29 2.61 16 16 F -0.16 -3.63 17.26 2.25 0.04 -3.59 16 17 C -0.20 -4.88 8.67 -38.77 -0.34 -5.22 16 18 C 0.14 3.40 5.57 -106.86 -0.60 2.80 16 19 C -0.45 -10.74 9.05 -37.74 -0.34 -11.08 16 20 H 0.09 1.98 7.91 -52.48 -0.41 1.57 16 21 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 22 N -0.78 -18.59 10.96 55.55 0.61 -17.98 16 23 Si 0.92 17.05 29.59 -169.99 -5.03 12.01 16 24 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 27 C -0.23 -5.16 9.38 -38.68 -0.36 -5.52 16 28 C -0.07 -0.95 9.65 -39.64 -0.38 -1.33 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.34 3.13 7.31 -39.29 -0.29 2.85 16 33 H 0.34 3.14 9.06 -39.29 -0.36 2.79 16 34 H 0.12 1.36 6.62 -52.49 -0.35 1.02 16 35 H 0.12 2.18 7.56 -52.49 -0.40 1.78 16 36 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.17 2.33 8.06 -52.48 -0.42 1.91 16 38 H 0.11 2.25 7.92 -52.49 -0.42 1.83 16 39 H 0.13 3.42 6.15 -52.49 -0.32 3.09 16 40 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 41 H 0.11 2.29 8.05 -52.49 -0.42 1.86 16 42 H 0.12 1.35 8.01 -52.49 -0.42 0.93 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -25.96 357.71 -10.47 -36.43 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.05 Total: 14.23 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -6.21 Total: -30.00 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.39 Total: -34.48 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -25.96 -10.47 -36.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162914147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.673 kcal (2) G-P(sol) polarization free energy of solvation -25.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds