Wall clock time and date at job start Tue Mar 31 2020 14:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47060 * 2 1 4 4 N 1.46898 * 109.47233 * 120.00665 * 2 1 3 5 5 C 1.50706 * 109.46799 * 240.00048 * 2 1 3 6 6 C 1.38819 * 119.74044 * 279.72688 * 5 2 1 7 7 C 1.37772 * 120.66020 * 180.27678 * 6 5 2 8 8 C 1.39082 * 119.77844 * 0.02562 * 7 6 5 9 9 C 1.40679 * 119.34765 * 359.97438 * 8 7 6 10 10 C 1.46533 * 106.07013 * 179.97438 * 9 8 7 11 11 C 1.34227 * 107.04795 * 0.02562 * 10 9 8 12 12 N 1.37021 * 109.91944 * 359.97438 * 11 10 9 13 13 C 1.40068 * 125.09275 * 180.02562 * 12 11 10 14 14 C 1.39244 * 119.92994 * 130.00008 * 13 12 11 15 15 C 1.38721 * 120.40296 * 179.97438 * 14 13 12 16 16 F 1.35098 * 119.86271 * 179.97438 * 15 14 13 17 17 C 1.37908 * 120.26571 * 359.97438 * 15 14 13 18 18 C 1.40706 * 119.86313 * 359.97438 * 17 15 14 19 19 C 1.41409 * 120.19559 * 179.97438 * 18 17 15 20 20 H 1.08009 * 119.99763 * 204.46677 * 19 18 17 21 21 C 1.39929 * 120.00571 * 24.47467 * 19 18 17 22 22 N 1.30834 * 119.99760 * 17.87687 * 21 19 18 23 23 Si 1.86791 * 120.00282 * 197.88305 * 21 19 18 24 24 H 1.48496 * 109.47383 * 89.99652 * 23 21 19 25 25 H 1.48498 * 109.47333 * 209.99539 * 23 21 19 26 26 H 1.48497 * 109.47222 * 329.99567 * 23 21 19 27 27 C 1.38247 * 119.93325 * 309.72447 * 13 12 11 28 28 C 1.36650 * 119.73186 * 100.00159 * 5 2 1 29 29 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46408 * 299.99836 * 1 2 3 31 31 H 1.08999 * 109.46767 * 59.99625 * 1 2 3 32 32 H 1.00903 * 111.00292 * 59.99467 * 4 2 1 33 33 H 1.00896 * 110.99908 * 183.95605 * 4 2 1 34 34 H 1.07995 * 119.66528 * 0.25343 * 6 5 2 35 35 H 1.08001 * 120.11199 * 179.97438 * 7 6 5 36 36 H 1.08000 * 126.47358 * 179.97438 * 10 9 8 37 37 H 1.08003 * 125.03922 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.80027 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.06909 * 179.97438 * 17 15 14 40 40 H 0.96998 * 119.99772 * 180.02562 * 22 21 19 41 41 H 1.07995 * 120.13862 * 0.02562 * 27 13 12 42 42 H 1.08002 * 120.11966 * 359.70185 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0323 -0.7104 -1.2305 6 6 2.0698 -2.0979 -1.2576 7 6 2.5307 -2.7666 -2.3704 8 6 2.9638 -2.0468 -3.4789 9 6 2.9238 -0.6409 -3.4466 10 6 3.4384 -0.1906 -4.7426 11 6 3.7438 -1.2907 -5.4485 12 7 3.4673 -2.4111 -4.7098 13 6 3.6664 -3.7290 -5.1404 14 6 4.3535 -4.6285 -4.3295 15 6 4.5559 -5.9361 -4.7460 16 9 5.2245 -6.7996 -3.9507 17 6 4.0773 -6.3581 -5.9686 18 6 3.3805 -5.4588 -6.7965 19 6 2.8872 -5.8838 -8.0518 20 1 2.7174 -5.1626 -8.8376 21 6 2.6188 -7.2388 -8.2758 22 7 2.4824 -8.0549 -7.2623 23 14 2.4554 -7.8823 -10.0217 24 1 3.7861 -8.3200 -10.5146 25 1 1.5180 -9.0338 -10.0392 26 1 1.9324 -6.8049 -10.8996 27 6 3.1755 -4.1355 -6.3671 28 6 2.4525 0.0164 -2.3087 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6962 -1.6481 1.2226 33 1 3.0262 -0.6502 1.2558 34 1 1.7347 -2.6585 -0.3976 35 1 2.5565 -3.8463 -2.3818 36 1 3.5499 0.8330 -5.0686 37 1 4.1476 -1.2924 -6.4502 38 1 4.7312 -4.3062 -3.3704 39 1 4.2370 -7.3768 -6.2899 40 1 2.2968 -8.9942 -7.4177 41 1 2.6390 -3.4389 -6.9943 42 1 2.4201 1.0956 -2.2806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162914147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:09 Heat of formation + Delta-G solvation = 13.516602 kcal Electronic energy + Delta-G solvation = -26011.199832 eV Core-core repulsion = 22255.521409 eV Total energy + Delta-G solvation = -3755.678423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.75396 -42.54088 -39.75635 -38.78479 -36.07011 -35.46921 -33.60371 -31.76414 -31.48826 -29.80132 -29.58081 -28.81366 -27.55858 -24.46634 -23.63607 -23.41337 -22.87178 -21.30391 -20.84860 -19.76098 -18.29128 -17.40265 -17.29565 -17.15061 -16.97749 -16.80970 -16.42541 -16.40638 -16.12929 -15.52162 -15.43296 -14.90581 -14.76617 -14.40002 -14.18436 -14.00610 -13.78112 -13.57201 -13.54192 -13.22633 -13.08270 -12.91885 -12.74623 -12.54772 -12.31463 -12.21902 -12.18024 -11.97106 -11.76133 -11.64890 -11.19218 -10.73669 -9.82251 -9.70834 -9.55770 -9.06474 -8.85721 -8.48489 -6.62577 0.10648 0.35982 0.56065 0.77837 1.36819 1.44071 1.51738 1.80833 1.85531 2.13241 2.44715 2.87748 3.32166 3.54888 3.67676 3.71765 3.84436 4.00162 4.07331 4.21409 4.29692 4.40394 4.42787 4.49637 4.55411 4.66453 4.70890 4.77572 4.85202 4.90912 5.02646 5.04681 5.08409 5.17464 5.23166 5.34501 5.42726 5.46707 5.50082 5.64070 5.71894 5.83244 5.87937 5.98238 6.26120 6.30297 6.32503 6.48881 6.58381 6.65616 6.69795 8.12097 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002989 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.664739 B = 9365.132992 C = 9809.218555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.140 3.860 3 H 0.097 0.903 4 N -0.841 5.841 5 C -0.145 4.145 6 C -0.098 4.098 7 C -0.139 4.139 8 C 0.070 3.930 9 C -0.121 4.121 10 C -0.200 4.200 11 C 0.042 3.958 12 N -0.437 5.437 13 C 0.178 3.822 14 C -0.286 4.286 15 C 0.118 3.882 16 F -0.159 7.159 17 C -0.222 4.222 18 C 0.120 3.880 19 C -0.472 4.472 20 H 0.095 0.905 21 C 0.035 3.965 22 N -0.809 5.809 23 Si 0.990 3.010 24 H -0.260 1.260 25 H -0.268 1.268 26 H -0.252 1.252 27 C -0.237 4.237 28 C -0.065 4.065 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.342 0.658 33 H 0.346 0.654 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.296 0.704 41 H 0.115 0.885 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 12.385 6.595 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 H 0.115 0.885 4 N -0.370 5.370 5 C -0.148 4.148 6 C -0.117 4.117 7 C -0.160 4.160 8 C -0.035 4.035 9 C -0.126 4.126 10 C -0.224 4.224 11 C -0.081 4.081 12 N -0.115 5.115 13 C 0.088 3.912 14 C -0.307 4.307 15 C 0.098 3.902 16 F -0.138 7.138 17 C -0.243 4.243 18 C 0.116 3.884 19 C -0.500 4.500 20 H 0.113 0.887 21 C -0.183 4.183 22 N -0.433 5.433 23 Si 0.810 3.190 24 H -0.185 1.185 25 H -0.192 1.192 26 H -0.175 1.175 27 C -0.258 4.258 28 C -0.084 4.084 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.121 0.879 36 H 0.198 0.802 37 H 0.201 0.799 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.969 12.392 7.021 14.378 hybrid contribution 0.704 -1.924 -1.294 2.423 sum -1.265 10.468 5.728 11.999 Atomic orbital electron populations 1.21787 0.93433 1.02006 1.02375 1.20352 0.95694 0.97464 0.83706 0.88506 1.59115 1.16853 1.21803 1.39219 1.20517 1.02472 0.93460 0.98341 1.20719 0.99655 0.94400 0.96921 1.20238 1.03889 0.98989 0.92844 1.18728 1.02251 0.95048 0.87427 1.19573 1.05124 0.91063 0.96815 1.22010 1.08668 0.98906 0.92785 1.22402 1.02869 0.84005 0.98785 1.41588 1.53169 1.03959 1.12788 1.17096 0.97420 0.82343 0.94365 1.20074 1.14313 0.93082 1.03267 1.17432 0.95769 0.87111 0.89840 1.91352 1.78800 1.69872 1.73766 1.21306 1.05731 1.02204 0.95024 1.17447 0.88110 0.90093 0.92742 1.19974 1.37730 0.94243 0.98042 0.88748 1.26946 0.91096 0.96445 1.03771 1.69852 1.31450 1.06849 1.35167 0.85059 0.79419 0.78593 0.75938 1.18451 1.19226 1.17507 1.21021 1.09420 0.97927 0.97382 1.20388 0.97176 1.00423 0.90435 0.93320 0.91039 0.91907 0.84434 0.84121 0.84476 0.87914 0.80157 0.79936 0.87078 0.86261 0.89311 0.86718 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.47 71.98 0.68 -1.64 16 2 C 0.14 2.46 3.58 44.17 0.16 2.62 16 3 H 0.10 1.51 7.97 -2.39 -0.02 1.49 16 4 N -0.84 -13.99 9.05 -171.80 -1.56 -15.54 16 5 C -0.14 -3.36 4.91 -20.09 -0.10 -3.46 16 6 C -0.10 -2.62 9.26 22.30 0.21 -2.41 16 7 C -0.14 -4.82 9.55 22.36 0.21 -4.61 16 8 C 0.07 2.58 6.58 38.99 0.26 2.83 16 9 C -0.12 -3.75 6.37 -20.19 -0.13 -3.88 16 10 C -0.20 -5.55 11.08 23.52 0.26 -5.29 16 11 C 0.04 1.36 10.94 82.97 0.91 2.27 16 12 N -0.44 -17.05 2.89 -339.19 -0.98 -18.03 16 13 C 0.18 7.95 5.89 38.07 0.22 8.18 16 14 C -0.29 -13.19 8.86 22.63 0.20 -12.99 16 15 C 0.12 5.80 7.28 22.31 0.16 5.97 16 16 F -0.16 -7.49 17.26 44.97 0.78 -6.72 16 17 C -0.22 -11.53 8.67 22.79 0.20 -11.33 16 18 C 0.12 6.11 5.57 -21.31 -0.12 5.99 16 19 C -0.47 -23.29 9.05 23.46 0.21 -23.08 16 20 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 21 C 0.04 1.64 5.14 85.25 0.44 2.08 16 22 N -0.81 -39.84 10.96 21.82 0.24 -39.60 16 23 Si 0.99 34.81 29.59 68.60 2.03 36.84 16 24 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 25 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 26 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 27 C -0.24 -11.08 9.38 22.86 0.21 -10.87 16 28 C -0.07 -1.62 9.65 22.23 0.21 -1.40 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.34 5.45 7.31 -89.69 -0.66 4.80 16 33 H 0.35 5.41 9.06 -89.70 -0.81 4.60 16 34 H 0.14 3.00 6.62 -2.91 -0.02 2.98 16 35 H 0.10 3.86 7.56 -2.91 -0.02 3.84 16 36 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.11 4.91 7.92 -2.91 -0.02 4.89 16 39 H 0.12 6.44 6.15 -2.91 -0.02 6.42 16 40 H 0.30 13.07 8.30 -92.71 -0.77 12.30 16 41 H 0.11 5.05 8.05 -2.91 -0.02 5.02 16 42 H 0.15 2.73 8.01 -2.91 -0.02 2.71 16 Total: -1.00 -57.87 357.71 4.32 -53.55 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -0.39 Total: 40.53 kcal Atomic # 6 Polarization: -55.23 SS G_CDS: 4.20 Total: -51.03 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.30 Total: -73.18 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.78 Total: -6.72 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -57.87 4.32 -53.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162914147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.070 kcal (2) G-P(sol) polarization free energy of solvation -57.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds