Wall clock time and date at job start Tue Mar 31 2020 15:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 5 5 C 1.50695 * 109.47310 * 295.00134 * 4 2 1 6 6 C 1.38237 * 120.00787 * 264.72285 * 5 4 2 7 7 C 1.38212 * 120.01625 * 179.76768 * 6 5 4 8 8 C 1.38267 * 120.02633 * 0.50928 * 7 6 5 9 9 C 1.38193 * 120.01210 * 359.74182 * 8 7 6 10 10 C 1.38331 * 120.00860 * 85.00005 * 5 4 2 11 11 Cl 1.73603 * 120.00999 * 359.95132 * 10 5 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47273 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.47033 * 180.02562 * 17 16 15 19 19 C 1.36930 * 120.00034 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99872 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00052 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99981 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99977 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46765 * 90.00464 * 23 21 19 25 25 H 1.48499 * 109.47159 * 210.00053 * 23 21 19 26 26 H 1.48498 * 109.47267 * 330.00123 * 23 21 19 27 27 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 28 28 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09005 * 109.46898 * 55.00584 * 4 2 1 31 31 H 1.09000 * 109.47017 * 174.99595 * 4 2 1 32 32 H 1.08004 * 119.99214 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.99198 * 180.22863 * 7 6 5 34 34 H 1.07995 * 119.99493 * 179.76887 * 8 7 6 35 35 H 1.07995 * 120.00787 * 180.02562 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 37 37 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 38 38 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 39 39 H 1.08998 * 109.47382 * 300.00439 * 16 15 14 40 40 H 1.09005 * 109.46800 * 60.00640 * 16 15 14 41 41 H 1.08992 * 109.47143 * 300.00104 * 17 16 15 42 42 H 1.08997 * 109.46799 * 60.00311 * 17 16 15 43 43 H 0.97005 * 119.99806 * 0.02562 * 18 17 16 44 44 H 0.97005 * 120.00266 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 6 2.5262 0.9552 3.0433 7 6 2.1590 1.6726 4.1661 8 6 0.9103 1.4847 4.7295 9 6 0.0268 0.5832 4.1669 10 6 0.3920 -0.1315 3.0397 11 17 -0.7176 -1.2637 2.3320 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 6 2.1769 -0.9534 -6.1492 18 7 1.6851 -0.2652 -7.3454 19 6 2.0110 -0.7364 -8.5891 20 1 2.6310 -1.6152 -8.6881 21 6 1.5456 -0.0840 -9.7224 22 7 1.8593 -0.5367 -10.9179 23 14 0.4739 1.4364 -9.5510 24 1 1.3341 2.6462 -9.5111 25 1 -0.4500 1.5240 -10.7103 26 1 -0.3142 1.3476 -8.2956 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6054 -1.7198 1.2950 31 1 3.1263 -0.7995 1.2055 32 1 3.5035 1.0989 2.6066 33 1 2.8492 2.3770 4.6064 34 1 0.6253 2.0427 5.6090 35 1 -0.9486 0.4368 4.6067 36 1 1.1446 0.5355 -2.5436 37 1 3.2755 -0.9477 -3.6550 38 1 1.8218 -1.9748 -3.6465 39 1 0.5815 -0.2280 -4.8960 40 1 2.0357 0.7985 -4.9040 41 1 3.2668 -0.9539 -6.1530 42 1 1.8131 -1.9809 -6.1454 43 1 1.1286 0.5244 -7.2564 44 1 1.5337 -0.0810 -11.7099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167475633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:15 Heat of formation + Delta-G solvation = -19.137650 kcal Electronic energy + Delta-G solvation = -23907.109858 eV Core-core repulsion = 20271.042897 eV Total energy + Delta-G solvation = -3636.066962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.47018 -39.54666 -36.87824 -36.29904 -35.25540 -34.49421 -32.17270 -31.46895 -31.06985 -29.87724 -27.14303 -25.79947 -23.94380 -23.07646 -22.25483 -21.47370 -21.23851 -19.87990 -17.78585 -17.50953 -17.00151 -16.31277 -16.14666 -15.74212 -15.66334 -14.94263 -14.77143 -14.43858 -14.33320 -14.06055 -13.73699 -13.53114 -13.22331 -12.92210 -12.82259 -12.60419 -12.44954 -12.07148 -12.04190 -11.90734 -11.83529 -11.39288 -11.31098 -11.18468 -11.04552 -10.83438 -10.71620 -10.67371 -10.17612 -9.83107 -9.60268 -9.36901 -9.11137 -9.06958 -8.91316 -7.25409 -5.77685 -3.13819 0.66698 0.77050 1.73563 2.54492 3.01139 3.20085 3.35520 3.37758 3.43680 4.19414 4.28431 4.46812 4.48058 4.57622 4.62532 4.71083 4.82948 4.89102 4.92593 5.08290 5.17164 5.19914 5.31851 5.43659 5.44091 5.50505 5.52832 5.53417 5.74342 5.78846 5.83372 5.86676 5.91786 5.93078 5.95799 6.02074 6.13783 6.31297 6.38877 6.67780 6.70957 7.40354 7.98394 8.12630 8.41064 9.19765 9.91858 10.11411 11.40634 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.001912 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.255502 B =14638.896550 C =14727.858458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.068 4.068 5 C -0.069 4.069 6 C -0.105 4.105 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.110 4.110 10 C -0.034 4.034 11 Cl -0.062 7.062 12 C 0.516 3.484 13 O -0.540 6.540 14 N -0.727 5.727 15 C 0.122 3.878 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.091 0.909 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.360 0.640 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 5.797 36.332 36.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 H 0.116 0.884 4 C -0.105 4.105 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.061 4.061 11 Cl -0.033 7.033 12 C 0.302 3.698 13 O -0.417 6.417 14 N -0.379 5.379 15 C -0.002 4.002 16 C -0.180 4.180 17 C 0.032 3.968 18 N -0.402 5.402 19 C -0.375 4.375 20 H 0.109 0.891 21 C -0.193 4.193 22 N -0.581 5.581 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.193 0.807 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.093 4.813 36.135 36.585 hybrid contribution -1.182 1.467 -0.174 1.892 sum -4.275 6.280 35.961 36.755 Atomic orbital electron populations 1.22253 0.92616 1.03251 1.02745 1.21248 0.97969 1.00683 0.92440 0.88449 1.20482 1.02585 0.98632 0.88824 1.19799 0.92273 0.97577 0.97285 1.21104 0.99541 0.95573 0.96068 1.21277 0.96615 0.99285 0.95923 1.21131 0.93792 0.98114 1.00159 1.21082 1.00640 0.96351 0.94763 1.20874 0.91974 0.96414 0.96811 1.98383 1.61844 1.60114 1.82958 1.20533 0.80067 0.84622 0.84585 1.90711 1.37936 1.26233 1.86852 1.46077 1.53737 1.32169 1.05879 1.21341 0.99597 0.96443 0.82799 1.21992 1.01438 1.00313 0.94233 1.20499 0.96974 0.94889 0.84392 1.42686 1.62179 1.33147 1.02233 1.19073 1.26632 1.10236 0.81601 0.89144 1.24696 1.00508 0.99006 0.95082 1.69706 1.49757 1.41926 0.96761 0.86510 0.80759 0.84153 0.76858 1.21079 1.21697 1.20400 0.92351 0.91413 0.91018 0.89381 0.89506 0.84948 0.85345 0.85174 0.84963 0.76599 0.91193 0.91201 0.91369 0.91371 0.95170 0.95218 0.80702 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.32 37.16 0.27 -0.91 16 2 C -0.10 -0.87 2.71 -91.77 -0.25 -1.12 16 3 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.07 -0.59 3.97 -27.89 -0.11 -0.70 16 5 C -0.07 -0.53 4.86 -104.59 -0.51 -1.03 16 6 C -0.10 -0.67 9.68 -39.59 -0.38 -1.05 16 7 C -0.11 -0.61 10.05 -39.58 -0.40 -1.00 16 8 C -0.11 -0.60 10.05 -39.59 -0.40 -1.00 16 9 C -0.11 -0.69 9.83 -39.55 -0.39 -1.08 16 10 C -0.03 -0.26 5.18 -39.50 -0.20 -0.47 16 11 Cl -0.06 -0.50 23.12 -51.86 -1.20 -1.70 16 12 C 0.52 6.05 7.16 -10.98 -0.08 5.97 16 13 O -0.54 -8.43 15.92 5.55 0.09 -8.34 16 14 N -0.73 -7.84 5.44 -60.29 -0.33 -8.16 16 15 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 16 C -0.14 -2.00 5.44 -26.73 -0.15 -2.14 16 17 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 18 N -0.76 -18.04 5.41 -59.91 -0.32 -18.36 16 19 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 20 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 22 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 23 Si 0.89 22.06 27.74 -169.99 -4.71 17.34 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 27 H 0.06 0.40 7.55 -51.93 -0.39 0.01 16 28 H 0.07 0.60 6.73 -51.93 -0.35 0.25 16 29 H 0.07 0.53 5.29 -51.93 -0.27 0.26 16 30 H 0.09 0.89 7.13 -51.93 -0.37 0.52 16 31 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 32 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.40 3.33 7.88 -40.82 -0.32 3.00 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.36 8.26 5.53 -40.82 -0.23 8.04 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -34.22 370.05 -9.60 -43.83 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.58 Total: 5.77 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.89 Total: -7.19 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.12 Total: -55.29 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.20 Total: -1.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.22 -9.60 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167475633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.690 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds