Wall clock time and date at job start Tue Mar 31 2020 15:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 5 5 C 1.50695 * 109.47310 * 295.00134 * 4 2 1 6 6 C 1.38237 * 120.00787 * 264.72285 * 5 4 2 7 7 C 1.38212 * 120.01625 * 179.76768 * 6 5 4 8 8 C 1.38267 * 120.02633 * 0.50928 * 7 6 5 9 9 C 1.38193 * 120.01210 * 359.74182 * 8 7 6 10 10 C 1.38331 * 120.00860 * 85.00005 * 5 4 2 11 11 Cl 1.73603 * 120.00999 * 359.95132 * 10 5 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47273 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.47033 * 180.02562 * 17 16 15 19 19 C 1.36930 * 120.00034 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99872 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00052 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99981 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99977 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46765 * 90.00464 * 23 21 19 25 25 H 1.48499 * 109.47159 * 210.00053 * 23 21 19 26 26 H 1.48498 * 109.47267 * 330.00123 * 23 21 19 27 27 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 28 28 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09005 * 109.46898 * 55.00584 * 4 2 1 31 31 H 1.09000 * 109.47017 * 174.99595 * 4 2 1 32 32 H 1.08004 * 119.99214 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.99198 * 180.22863 * 7 6 5 34 34 H 1.07995 * 119.99493 * 179.76887 * 8 7 6 35 35 H 1.07995 * 120.00787 * 180.02562 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 37 37 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 38 38 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 39 39 H 1.08998 * 109.47382 * 300.00439 * 16 15 14 40 40 H 1.09005 * 109.46800 * 60.00640 * 16 15 14 41 41 H 1.08992 * 109.47143 * 300.00104 * 17 16 15 42 42 H 1.08997 * 109.46799 * 60.00311 * 17 16 15 43 43 H 0.97005 * 119.99806 * 0.02562 * 18 17 16 44 44 H 0.97005 * 120.00266 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 6 2.5262 0.9552 3.0433 7 6 2.1590 1.6726 4.1661 8 6 0.9103 1.4847 4.7295 9 6 0.0268 0.5832 4.1669 10 6 0.3920 -0.1315 3.0397 11 17 -0.7176 -1.2637 2.3320 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 6 2.1769 -0.9534 -6.1492 18 7 1.6851 -0.2652 -7.3454 19 6 2.0110 -0.7364 -8.5891 20 1 2.6310 -1.6152 -8.6881 21 6 1.5456 -0.0840 -9.7224 22 7 1.8593 -0.5367 -10.9179 23 14 0.4739 1.4364 -9.5510 24 1 1.3341 2.6462 -9.5111 25 1 -0.4500 1.5240 -10.7103 26 1 -0.3142 1.3476 -8.2956 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6054 -1.7198 1.2950 31 1 3.1263 -0.7995 1.2055 32 1 3.5035 1.0989 2.6066 33 1 2.8492 2.3770 4.6064 34 1 0.6253 2.0427 5.6090 35 1 -0.9486 0.4368 4.6067 36 1 1.1446 0.5355 -2.5436 37 1 3.2755 -0.9477 -3.6550 38 1 1.8218 -1.9748 -3.6465 39 1 0.5815 -0.2280 -4.8960 40 1 2.0357 0.7985 -4.9040 41 1 3.2668 -0.9539 -6.1530 42 1 1.8131 -1.9809 -6.1454 43 1 1.1286 0.5244 -7.2564 44 1 1.5337 -0.0810 -11.7099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167475633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:14 Heat of formation + Delta-G solvation = -40.981614 kcal Electronic energy + Delta-G solvation = -23908.057084 eV Core-core repulsion = 20271.042897 eV Total energy + Delta-G solvation = -3637.014187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22886 -40.21568 -37.69272 -37.41467 -36.07195 -35.90375 -33.89480 -32.33580 -31.66490 -31.20589 -27.74546 -27.25623 -24.99523 -23.77950 -23.47995 -22.70081 -22.12967 -20.79783 -19.63241 -18.33757 -17.70641 -17.24469 -16.94706 -16.65122 -16.51129 -16.15286 -15.87995 -15.71265 -15.18065 -14.95684 -14.80865 -14.70522 -14.43073 -13.86627 -13.79398 -13.77841 -13.40031 -13.24590 -12.88316 -12.70471 -12.56526 -12.54852 -12.41131 -12.36857 -12.09506 -12.01414 -11.93349 -11.89500 -11.81253 -11.25586 -10.98718 -10.78485 -10.10441 -9.83433 -9.57400 -9.32728 -8.03843 -5.38998 0.20245 0.32269 1.20935 1.37951 1.43364 1.50732 1.62166 2.15204 2.48611 2.70001 3.27096 3.51876 3.57778 3.76266 3.82367 4.00977 4.02617 4.07667 4.19523 4.23235 4.25906 4.38904 4.42204 4.48003 4.69463 4.70417 4.70912 4.75687 4.84052 4.87467 4.91902 5.01756 5.15869 5.23767 5.27626 5.28479 5.32517 5.43265 5.48321 5.52748 5.73729 5.90261 6.19565 6.54339 7.06365 7.23750 7.80836 8.01973 9.17554 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.001912 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.255502 B =14638.896550 C =14727.858458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.120 0.880 4 C -0.063 4.063 5 C -0.081 4.081 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.047 4.047 11 Cl -0.075 7.075 12 C 0.514 3.486 13 O -0.584 6.584 14 N -0.716 5.716 15 C 0.130 3.870 16 C -0.122 4.122 17 C 0.153 3.847 18 N -0.758 5.758 19 C -0.243 4.243 20 H 0.052 0.948 21 C -0.068 4.068 22 N -0.985 5.985 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.246 1.246 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.415 0.585 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.023 0.977 43 H 0.369 0.631 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 8.768 38.944 40.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.138 0.862 4 C -0.101 4.101 5 C -0.081 4.081 6 C -0.129 4.129 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.074 4.074 11 Cl -0.046 7.046 12 C 0.302 3.698 13 O -0.464 6.464 14 N -0.368 5.368 15 C 0.006 3.994 16 C -0.160 4.160 17 C 0.027 3.973 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.070 0.930 21 C -0.260 4.260 22 N -0.635 5.635 23 Si 0.790 3.210 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.170 1.170 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.252 0.748 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.203 0.797 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.321 7.804 38.805 39.817 hybrid contribution -0.712 0.456 -0.927 1.255 sum -5.033 8.260 37.878 39.093 Atomic orbital electron populations 1.22221 0.91828 1.02688 1.03711 1.21231 0.98386 1.01187 0.90479 0.86175 1.20368 1.01856 0.98041 0.89839 1.19730 0.92794 0.98368 0.97246 1.21308 0.99773 0.95346 0.96502 1.21597 0.97051 0.99102 0.95292 1.21476 0.93439 0.97499 1.00565 1.21312 1.01506 0.96372 0.94389 1.21006 0.91952 0.96812 0.97600 1.98375 1.62263 1.60730 1.83245 1.21116 0.79170 0.84049 0.85477 1.90696 1.39989 1.28273 1.87455 1.45925 1.53525 1.32382 1.04983 1.21080 0.99080 0.96007 0.83260 1.21758 1.02023 1.00335 0.91866 1.20661 0.96727 0.94951 0.84982 1.42647 1.62335 1.33612 1.01807 1.19046 1.25445 1.08922 0.83953 0.92961 1.25644 1.02696 1.03143 0.94485 1.69908 1.51709 1.44044 0.97814 0.85287 0.78686 0.79203 0.77850 1.20136 1.22283 1.17030 0.90933 0.92795 0.90437 0.91332 0.90345 0.83898 0.83006 0.82723 0.83884 0.74757 0.92018 0.92345 0.90089 0.89800 0.95663 0.95895 0.79749 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 7.32 71.98 0.53 -1.53 16 2 C -0.09 -1.43 2.71 -11.54 -0.03 -1.46 16 3 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 4 C -0.06 -1.09 3.97 29.85 0.12 -0.98 16 5 C -0.08 -1.15 4.86 -19.84 -0.10 -1.25 16 6 C -0.11 -1.21 9.68 22.26 0.22 -0.99 16 7 C -0.11 -0.89 10.05 22.27 0.22 -0.67 16 8 C -0.11 -0.87 10.05 22.27 0.22 -0.65 16 9 C -0.12 -1.27 9.83 22.29 0.22 -1.05 16 10 C -0.05 -0.67 5.18 22.32 0.12 -0.56 16 11 Cl -0.08 -1.20 23.12 -2.72 -0.06 -1.26 16 12 C 0.51 11.57 7.16 87.66 0.63 12.20 16 13 O -0.58 -18.40 15.92 -3.04 -0.05 -18.45 16 14 N -0.72 -13.99 5.44 -463.06 -2.52 -16.52 16 15 C 0.13 3.18 5.67 86.38 0.49 3.67 16 16 C -0.12 -3.13 5.44 30.59 0.17 -2.96 16 17 C 0.15 5.70 6.26 86.38 0.54 6.24 16 18 N -0.76 -35.17 5.41 -343.46 -1.86 -37.03 16 19 C -0.24 -14.10 10.47 84.03 0.88 -13.22 16 20 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.98 -63.72 13.97 21.65 0.30 -63.42 16 23 Si 0.96 44.79 27.74 68.60 1.90 46.70 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.25 -10.05 6.52 99.48 0.65 -9.40 16 27 H 0.07 0.79 7.55 -2.39 -0.02 0.77 16 28 H 0.05 0.92 6.73 -2.39 -0.02 0.90 16 29 H 0.08 1.03 5.29 -2.39 -0.01 1.02 16 30 H 0.07 1.44 7.13 -2.38 -0.02 1.42 16 31 H 0.08 1.45 7.86 -2.39 -0.02 1.43 16 32 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 35 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.42 5.57 7.88 -92.71 -0.73 4.83 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.37 15.79 5.53 -92.70 -0.51 15.28 16 44 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -75.92 370.05 2.12 -73.80 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.29 Total: 22.96 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.69 Total: -6.79 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.08 Total: -116.96 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.45 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.06 Total: -1.26 kcal Total: -75.92 2.12 -73.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167475633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.821 kcal (2) G-P(sol) polarization free energy of solvation -75.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds