Wall clock time and date at job start Tue Mar 31 2020 14:27:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50698 * 109.46956 * 2 1
4 4 O 1.21279 * 120.00671 * 0.02562 * 3 2 1
5 5 N 1.34786 * 119.99637 * 180.02562 * 3 2 1
6 6 C 1.46496 * 119.99674 * 180.02562 * 5 3 2
7 7 C 1.50702 * 109.46925 * 179.97438 * 6 5 3
8 8 C 1.38309 * 119.96266 * 269.97933 * 7 6 5
9 9 C 1.38268 * 120.15293 * 180.02562 * 8 7 6
10 10 C 1.38119 * 120.07648 * 359.70026 * 9 8 7
11 11 C 1.38902 * 119.91922 * 0.55387 * 10 9 8
12 12 N 1.39735 * 120.07457 * 179.74952 * 11 10 9
13 13 C 1.38294 * 120.00308 * 352.24192 * 12 11 10
14 14 C 1.39003 * 120.00046 * 300.14554 * 13 12 11
15 15 H 1.08005 * 119.99807 * 158.49476 * 14 13 12
16 16 C 1.40825 * 119.99858 * 338.48635 * 14 13 12
17 17 N 1.30344 * 120.00254 * 350.44067 * 16 14 13
18 18 Si 1.86804 * 120.00056 * 170.43667 * 16 14 13
19 19 H 1.48500 * 109.46861 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.47385 * 120.00011 * 18 16 14
21 21 H 1.48502 * 109.47070 * 240.00320 * 18 16 14
22 22 C 1.41164 * 120.00045 * 120.13755 * 13 12 11
23 23 C 1.43198 * 119.99789 * 354.52172 * 22 13 12
24 24 N 8.62274 * 154.26714 * 269.73212 * 2 1 3
25 25 C 1.43194 * 119.99963 * 174.24987 * 22 13 12
26 26 N 9.56471 * 135.08894 * 27.88499 * 6 1 2
27 27 C 1.38072 * 119.96111 * 90.00253 * 7 6 5
28 28 H 1.08991 * 109.47532 * 59.99228 * 1 2 3
29 29 H 1.08993 * 109.47112 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.46626 * 299.99777 * 1 2 3
31 31 H 1.09000 * 109.46741 * 240.00647 * 2 1 3
32 32 H 1.08996 * 109.47128 * 120.00613 * 2 1 3
33 33 H 0.96999 * 119.99861 * 359.97438 * 5 3 2
34 34 H 1.09006 * 109.47322 * 60.00112 * 6 5 3
35 35 H 1.08996 * 109.47614 * 299.99779 * 6 5 3
36 36 H 1.08009 * 119.92725 * 0.02562 * 8 7 6
37 37 H 1.08002 * 119.96254 * 179.97438 * 9 8 7
38 38 H 1.07996 * 120.04130 * 180.29430 * 10 9 8
39 39 H 0.97008 * 119.99948 * 172.24670 * 12 11 10
40 40 H 0.97003 * 120.00015 * 185.01945 * 17 16 14
41 41 H 1.07998 * 120.04435 * 359.97438 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2443 2.3427 0.0005
5 7 3.3575 1.6671 -0.0005
6 6 3.8458 3.0482 0.0000
7 6 5.3528 3.0482 -0.0001
8 6 6.0437 3.0481 1.1981
9 6 7.4263 3.0486 1.2026
10 6 8.1224 3.0430 0.0096
11 6 7.4317 3.0485 -1.1955
12 7 8.1327 3.0481 -2.4043
13 6 9.5068 3.2040 -2.4069
14 6 10.0768 4.3540 -1.8733
15 1 11.1085 4.3470 -1.5536
16 6 9.3093 5.5282 -1.7497
17 7 8.1302 5.5971 -2.3012
18 14 9.9807 6.9869 -0.7954
19 1 11.3307 6.6569 -0.2720
20 1 10.0732 8.1659 -1.6935
21 1 9.0724 7.2977 0.3375
22 6 10.3306 2.1952 -2.9514
23 6 9.7541 0.9612 -3.3936
24 7 9.2976 -0.0175 -3.7437
25 6 11.7419 2.4080 -3.0668
26 7 12.8618 2.5783 -3.1582
27 6 6.0423 3.0488 -1.1963
28 1 -0.3634 0.5139 -0.8898
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 1.8933 -0.5137 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 3.9878 0.9297 -0.0005
34 1 3.4829 3.5616 0.8906
35 1 3.4821 3.5626 -0.8894
36 1 5.5019 3.0476 2.1325
37 1 7.9627 3.0490 2.1400
38 1 9.2023 3.0386 0.0138
39 1 7.6554 2.9385 -3.2417
40 1 7.6322 6.4293 -2.2787
41 1 5.5023 3.0488 -2.1316
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169079473.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:27:08
Heat of formation + Delta-G solvation = 32.463907 kcal
Electronic energy + Delta-G solvation = -25759.030448 eV
Core-core repulsion = 22024.093604 eV
Total energy + Delta-G solvation = -3734.936844 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 324.133 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-39.90204 -39.20375 -37.19801 -35.41237 -34.78824 -34.65507 -33.53280 -32.95501
-31.15783 -30.88210 -28.11629 -27.23420 -26.36581 -23.88081 -22.23619 -21.90158
-20.55397 -20.30529 -18.77371 -17.47883 -17.18211 -16.83089 -16.25887 -15.96760
-15.75516 -15.58307 -15.14977 -14.46450 -13.98677 -13.88259 -13.43768 -13.36176
-12.86853 -12.79818 -12.62698 -12.42109 -12.39123 -12.29243 -12.28220 -11.93096
-11.84561 -11.70886 -11.64534 -11.54950 -11.34913 -11.15028 -11.01969 -10.90449
-10.75064 -10.57180 -10.13514 -10.03001 -9.79634 -9.09638 -8.43651 -8.20882
-7.75675 -6.69788 -5.50844 1.68371 1.87717 2.30076 2.59529 2.68421
2.76537 2.83779 3.30582 3.36706 3.80570 3.94929 4.02116 4.18750
4.35813 4.43166 4.63981 4.86155 4.90312 4.95834 5.12277 5.21805
5.36728 5.47835 5.56939 5.59166 5.61070 5.73763 5.77724 5.85568
6.01065 6.02203 6.17926 6.21009 6.32592 6.38036 6.41816 6.86359
6.89420 7.00609 7.03605 7.17226 7.41821 7.47896 7.65075 7.76714
8.17726 8.31100 8.49271 8.92783 9.09343 9.17203
Molecular weight = 324.13amu
Principal moments of inertia in cm(-1)
A = 0.013032 B = 0.003443 C = 0.002929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2148.095279 B = 8130.757698 C = 9558.221425
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.146 4.146
3 C 0.508 3.492
4 O -0.547 6.547
5 N -0.724 5.724
6 C 0.166 3.834
7 C -0.077 4.077
8 C -0.173 4.173
9 C -0.084 4.084
10 C -0.172 4.172
11 C 0.257 3.743
12 N -0.660 5.660
13 C 0.382 3.618
14 C -0.380 4.380
15 H 0.110 0.890
16 C 0.074 3.926
17 N -0.714 5.714
18 Si 0.920 3.080
19 H -0.248 1.248
20 H -0.263 1.263
21 H -0.260 1.260
22 C -0.313 4.313
23 C 0.311 3.689
24 N -0.535 5.535
25 C 0.324 3.676
26 N -0.534 5.534
27 C -0.172 4.172
28 H 0.061 0.939
29 H 0.059 0.941
30 H 0.060 0.940
31 H 0.093 0.907
32 H 0.092 0.908
33 H 0.403 0.597
34 H 0.071 0.929
35 H 0.072 0.928
36 H 0.109 0.891
37 H 0.115 0.885
38 H 0.133 0.867
39 H 0.401 0.599
40 H 0.301 0.699
41 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.603 -0.084 7.950 14.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.186 4.186
3 C 0.295 3.705
4 O -0.425 6.425
5 N -0.375 5.375
6 C 0.043 3.957
7 C -0.078 4.078
8 C -0.193 4.193
9 C -0.102 4.102
10 C -0.194 4.194
11 C 0.153 3.847
12 N -0.280 5.280
13 C 0.278 3.722
14 C -0.407 4.407
15 H 0.128 0.872
16 C -0.158 4.158
17 N -0.332 5.332
18 Si 0.742 3.258
19 H -0.171 1.171
20 H -0.188 1.188
21 H -0.184 1.184
22 C -0.332 4.332
23 C 0.004 3.996
24 N -0.218 5.218
25 C 0.016 3.984
26 N -0.216 5.216
27 C -0.195 4.195
28 H 0.080 0.920
29 H 0.078 0.922
30 H 0.079 0.921
31 H 0.111 0.889
32 H 0.110 0.890
33 H 0.238 0.762
34 H 0.089 0.911
35 H 0.090 0.910
36 H 0.127 0.873
37 H 0.133 0.867
38 H 0.151 0.849
39 H 0.238 0.762
40 H 0.113 0.887
41 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -11.268 -0.528 7.264 13.417
hybrid contribution 0.141 0.787 0.075 0.803
sum -11.127 0.259 7.339 13.332
Atomic orbital electron populations
1.21518 0.93139 1.01439 1.03292 1.21640 0.98562 0.93938 1.04426
1.20808 0.82124 0.91823 0.75747 1.90692 1.55391 1.46630 1.49788
1.46189 1.07005 1.09150 1.75191 1.20148 0.90214 0.82877 1.02482
1.19325 0.93364 1.01864 0.93246 1.20611 0.94173 1.08018 0.96521
1.20808 0.93768 0.98351 0.97315 1.20998 1.00897 1.06607 0.90894
1.17498 0.90216 0.91024 0.85984 1.41539 1.04862 1.75872 1.05708
1.16719 0.80294 0.88842 0.86381 1.20356 0.99474 0.92634 1.28258
0.87205 1.26443 0.93646 1.01883 0.93854 1.69481 1.08923 1.29080
1.25694 0.85959 0.81185 0.78741 0.79948 1.17103 1.18799 1.18438
1.13006 0.85001 0.94719 1.40456 1.25169 0.92391 0.91549 0.90512
1.81032 1.09748 1.12747 1.18234 1.24737 0.91314 0.91756 0.90558
1.81080 1.12351 1.10362 1.17810 1.20341 0.92169 1.09549 0.97413
0.92018 0.92189 0.92075 0.88873 0.88956 0.76220 0.91078 0.91009
0.87287 0.86684 0.84947 0.76239 0.88686 0.86721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16
2 C -0.15 -1.18 6.42 -27.88 -0.18 -1.36 16
3 C 0.51 6.01 7.83 -10.98 -0.09 5.93 16
4 O -0.55 -8.61 15.98 5.56 0.09 -8.52 16
5 N -0.72 -7.96 5.55 -61.47 -0.34 -8.30 16
6 C 0.17 2.06 5.80 -5.19 -0.03 2.03 16
7 C -0.08 -1.04 5.24 -104.66 -0.55 -1.59 16
8 C -0.17 -2.31 9.70 -39.54 -0.38 -2.69 16
9 C -0.08 -1.19 10.04 -39.61 -0.40 -1.59 16
10 C -0.17 -2.84 8.62 -39.38 -0.34 -3.17 16
11 C 0.26 4.31 5.16 -83.75 -0.43 3.88 16
12 N -0.66 -11.78 3.32 -8.18 -0.03 -11.81 16
13 C 0.38 7.44 4.95 -83.56 -0.41 7.03 16
14 C -0.38 -7.31 6.86 -38.32 -0.26 -7.57 16
15 H 0.11 2.17 7.15 -52.48 -0.38 1.80 16
16 C 0.07 1.32 4.82 -17.21 -0.08 1.24 16
17 N -0.71 -12.81 11.05 55.59 0.61 -12.20 16
18 Si 0.92 14.30 29.58 -169.99 -5.03 9.27 16
19 H -0.25 -3.96 7.11 56.52 0.40 -3.56 16
20 H -0.26 -4.11 7.11 56.52 0.40 -3.71 16
21 H -0.26 -4.05 7.11 56.52 0.40 -3.65 16
22 C -0.31 -6.56 5.88 -104.94 -0.62 -7.17 16
23 C 0.31 6.77 14.82 -22.50 -0.33 6.43 16
24 N -0.54 -12.16 18.53 41.81 0.77 -11.38 16
25 C 0.32 7.20 13.97 -22.46 -0.31 6.89 16
26 N -0.53 -12.41 18.54 41.85 0.78 -11.63 16
27 C -0.17 -2.59 9.55 -39.38 -0.38 -2.97 16
28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16
29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16
31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.40 3.79 8.46 -40.82 -0.35 3.44 16
34 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16
35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16
36 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16
37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16
38 H 0.13 2.30 6.26 -52.49 -0.33 1.97 16
39 H 0.40 6.98 8.84 -40.82 -0.36 6.62 16
40 H 0.30 4.98 8.29 -40.82 -0.34 4.64 16
41 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16
LS Contribution 372.71 15.07 5.62 5.62
Total: -1.00 -25.46 372.71 -6.74 -32.21
By element:
Atomic # 1 Polarization: 17.01 SS G_CDS: -4.76 Total: 12.25 kcal
Atomic # 6 Polarization: 8.95 SS G_CDS: -4.45 Total: 4.50 kcal
Atomic # 7 Polarization: -57.12 SS G_CDS: 1.80 Total: -55.32 kcal
Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal
Atomic # 14 Polarization: 14.30 SS G_CDS: -5.03 Total: 9.27 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -25.46 -6.74 -32.21 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169079473.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.671 kcal
(2) G-P(sol) polarization free energy of solvation -25.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds