Wall clock time and date at job start Tue Mar 31 2020 14:27:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50698 * 109.46956 * 2 1
4 4 O 1.21279 * 120.00671 * 0.02562 * 3 2 1
5 5 N 1.34786 * 119.99637 * 180.02562 * 3 2 1
6 6 C 1.46496 * 119.99674 * 180.02562 * 5 3 2
7 7 C 1.50702 * 109.46925 * 179.97438 * 6 5 3
8 8 C 1.38309 * 119.96266 * 269.97933 * 7 6 5
9 9 C 1.38268 * 120.15293 * 180.02562 * 8 7 6
10 10 C 1.38119 * 120.07648 * 359.70026 * 9 8 7
11 11 C 1.38902 * 119.91922 * 0.55387 * 10 9 8
12 12 N 1.39735 * 120.07457 * 179.74952 * 11 10 9
13 13 C 1.38294 * 120.00308 * 352.24192 * 12 11 10
14 14 C 1.39003 * 120.00046 * 300.14554 * 13 12 11
15 15 H 1.08005 * 119.99807 * 158.49476 * 14 13 12
16 16 C 1.40825 * 119.99858 * 338.48635 * 14 13 12
17 17 N 1.30344 * 120.00254 * 350.44067 * 16 14 13
18 18 Si 1.86804 * 120.00056 * 170.43667 * 16 14 13
19 19 H 1.48500 * 109.46861 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.47385 * 120.00011 * 18 16 14
21 21 H 1.48502 * 109.47070 * 240.00320 * 18 16 14
22 22 C 1.41164 * 120.00045 * 120.13755 * 13 12 11
23 23 C 1.43198 * 119.99789 * 354.52172 * 22 13 12
24 24 N 8.62274 * 154.26714 * 269.73212 * 2 1 3
25 25 C 1.43194 * 119.99963 * 174.24987 * 22 13 12
26 26 N 9.56471 * 135.08894 * 27.88499 * 6 1 2
27 27 C 1.38072 * 119.96111 * 90.00253 * 7 6 5
28 28 H 1.08991 * 109.47532 * 59.99228 * 1 2 3
29 29 H 1.08993 * 109.47112 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.46626 * 299.99777 * 1 2 3
31 31 H 1.09000 * 109.46741 * 240.00647 * 2 1 3
32 32 H 1.08996 * 109.47128 * 120.00613 * 2 1 3
33 33 H 0.96999 * 119.99861 * 359.97438 * 5 3 2
34 34 H 1.09006 * 109.47322 * 60.00112 * 6 5 3
35 35 H 1.08996 * 109.47614 * 299.99779 * 6 5 3
36 36 H 1.08009 * 119.92725 * 0.02562 * 8 7 6
37 37 H 1.08002 * 119.96254 * 179.97438 * 9 8 7
38 38 H 1.07996 * 120.04130 * 180.29430 * 10 9 8
39 39 H 0.97008 * 119.99948 * 172.24670 * 12 11 10
40 40 H 0.97003 * 120.00015 * 185.01945 * 17 16 14
41 41 H 1.07998 * 120.04435 * 359.97438 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2443 2.3427 0.0005
5 7 3.3575 1.6671 -0.0005
6 6 3.8458 3.0482 0.0000
7 6 5.3528 3.0482 -0.0001
8 6 6.0437 3.0481 1.1981
9 6 7.4263 3.0486 1.2026
10 6 8.1224 3.0430 0.0096
11 6 7.4317 3.0485 -1.1955
12 7 8.1327 3.0481 -2.4043
13 6 9.5068 3.2040 -2.4069
14 6 10.0768 4.3540 -1.8733
15 1 11.1085 4.3470 -1.5536
16 6 9.3093 5.5282 -1.7497
17 7 8.1302 5.5971 -2.3012
18 14 9.9807 6.9869 -0.7954
19 1 11.3307 6.6569 -0.2720
20 1 10.0732 8.1659 -1.6935
21 1 9.0724 7.2977 0.3375
22 6 10.3306 2.1952 -2.9514
23 6 9.7541 0.9612 -3.3936
24 7 9.2976 -0.0175 -3.7437
25 6 11.7419 2.4080 -3.0668
26 7 12.8618 2.5783 -3.1582
27 6 6.0423 3.0488 -1.1963
28 1 -0.3634 0.5139 -0.8898
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 1.8933 -0.5137 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 3.9878 0.9297 -0.0005
34 1 3.4829 3.5616 0.8906
35 1 3.4821 3.5626 -0.8894
36 1 5.5019 3.0476 2.1325
37 1 7.9627 3.0490 2.1400
38 1 9.2023 3.0386 0.0138
39 1 7.6554 2.9385 -3.2417
40 1 7.6322 6.4293 -2.2787
41 1 5.5023 3.0488 -2.1316
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169079473.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:27:07
Heat of formation + Delta-G solvation = 20.013833 kcal
Electronic energy + Delta-G solvation = -25759.570324 eV
Core-core repulsion = 22024.093604 eV
Total energy + Delta-G solvation = -3735.476720 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 324.133 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.95524 -40.37347 -38.58262 -37.00808 -36.51467 -35.82096 -34.90432 -33.70966
-32.59005 -31.96539 -29.43117 -28.77737 -27.38848 -24.71029 -23.60940 -23.09478
-21.83784 -21.25729 -20.28816 -18.87284 -18.38786 -18.04187 -17.54893 -17.12550
-16.71620 -16.63312 -16.41242 -15.60844 -15.14127 -14.94719 -14.61660 -14.46586
-14.37898 -14.33142 -13.90943 -13.84612 -13.62854 -13.46792 -13.38450 -13.31532
-13.15899 -13.10313 -13.02652 -12.69062 -12.62151 -12.60681 -12.17784 -12.04728
-12.00031 -11.77580 -11.49513 -11.24369 -10.89837 -10.07350 -9.70930 -9.59496
-9.15033 -8.04317 -7.11182 0.45069 0.59630 1.03432 1.39372 1.53666
1.55834 1.68808 2.06313 2.10458 2.25359 2.38244 2.40271 2.63465
2.89612 3.20564 3.44604 3.77879 3.88323 3.91351 4.12286 4.26855
4.29603 4.39260 4.52723 4.59735 4.67324 4.70152 4.74206 4.82766
4.87701 5.02387 5.05550 5.09340 5.22762 5.33416 5.45151 5.46980
5.61361 5.72867 5.80265 5.86091 6.09246 6.18001 6.32139 6.59840
6.91722 7.06312 7.24241 7.28664 7.37418 7.76453
Molecular weight = 324.13amu
Principal moments of inertia in cm(-1)
A = 0.013032 B = 0.003443 C = 0.002929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2148.095279 B = 8130.757698 C = 9558.221425
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.140 4.140
3 C 0.504 3.496
4 O -0.592 6.592
5 N -0.716 5.716
6 C 0.171 3.829
7 C -0.068 4.068
8 C -0.165 4.165
9 C -0.082 4.082
10 C -0.190 4.190
11 C 0.238 3.762
12 N -0.662 5.662
13 C 0.381 3.619
14 C -0.376 4.376
15 H 0.102 0.898
16 C 0.052 3.948
17 N -0.715 5.715
18 Si 0.971 3.029
19 H -0.256 1.256
20 H -0.261 1.261
21 H -0.255 1.255
22 C -0.328 4.328
23 C 0.318 3.682
24 N -0.558 5.558
25 C 0.329 3.671
26 N -0.560 5.560
27 C -0.176 4.176
28 H 0.044 0.956
29 H 0.084 0.916
30 H 0.048 0.952
31 H 0.112 0.888
32 H 0.118 0.882
33 H 0.413 0.587
34 H 0.073 0.927
35 H 0.061 0.939
36 H 0.134 0.866
37 H 0.138 0.862
38 H 0.118 0.882
39 H 0.400 0.600
40 H 0.311 0.689
41 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.760 0.178 9.512 15.916
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.179 4.179
3 C 0.292 3.708
4 O -0.472 6.472
5 N -0.368 5.368
6 C 0.048 3.952
7 C -0.069 4.069
8 C -0.185 4.185
9 C -0.101 4.101
10 C -0.212 4.212
11 C 0.136 3.864
12 N -0.283 5.283
13 C 0.276 3.724
14 C -0.403 4.403
15 H 0.120 0.880
16 C -0.179 4.179
17 N -0.333 5.333
18 Si 0.791 3.209
19 H -0.179 1.179
20 H -0.185 1.185
21 H -0.179 1.179
22 C -0.347 4.347
23 C 0.013 3.987
24 N -0.242 5.242
25 C 0.022 3.978
26 N -0.244 5.244
27 C -0.198 4.198
28 H 0.063 0.937
29 H 0.103 0.897
30 H 0.067 0.933
31 H 0.130 0.870
32 H 0.136 0.864
33 H 0.250 0.750
34 H 0.091 0.909
35 H 0.079 0.921
36 H 0.151 0.849
37 H 0.156 0.844
38 H 0.136 0.864
39 H 0.237 0.763
40 H 0.123 0.877
41 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -12.433 -0.298 8.831 15.253
hybrid contribution 0.386 0.786 -0.335 0.937
sum -12.047 0.488 8.496 14.750
Atomic orbital electron populations
1.21529 0.93463 1.02559 1.01871 1.21703 0.98192 0.91508 1.06501
1.21510 0.81764 0.92980 0.74496 1.90675 1.56406 1.48289 1.51878
1.46122 1.07183 1.08852 1.74618 1.20005 0.89326 0.83763 1.02118
1.19408 0.93825 1.00829 0.92863 1.20893 0.93932 1.06315 0.97347
1.21077 0.94303 0.97293 0.97427 1.21030 1.00425 1.08005 0.91766
1.17666 0.90807 0.92314 0.85619 1.41460 1.04152 1.76485 1.06175
1.16676 0.81051 0.88459 0.86215 1.20474 0.99285 0.93107 1.27461
0.88025 1.26890 0.93784 1.02921 0.94345 1.69470 1.09027 1.29987
1.24835 0.85217 0.80261 0.76457 0.78995 1.17916 1.18486 1.17885
1.13085 0.84633 0.95075 1.41922 1.25264 0.91968 0.91444 0.90070
1.81016 1.10404 1.13324 1.19434 1.24947 0.91526 0.91219 0.90063
1.81062 1.12937 1.11160 1.19220 1.20421 0.91599 1.09614 0.98206
0.93679 0.89731 0.93325 0.86989 0.86415 0.75048 0.90877 0.92059
0.84862 0.84415 0.86399 0.76338 0.87702 0.86592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.06 9.20 71.98 0.66 -1.40 16
2 C -0.14 -1.91 6.42 29.85 0.19 -1.72 16
3 C 0.50 11.13 7.83 87.65 0.69 11.81 16
4 O -0.59 -18.31 15.98 -3.02 -0.05 -18.36 16
5 N -0.72 -14.32 5.55 -466.78 -2.59 -16.91 16
6 C 0.17 3.97 5.80 85.63 0.50 4.47 16
7 C -0.07 -1.71 5.24 -19.89 -0.10 -1.81 16
8 C -0.16 -3.92 9.70 22.29 0.22 -3.70 16
9 C -0.08 -2.16 10.04 22.25 0.22 -1.94 16
10 C -0.19 -6.09 8.62 22.40 0.19 -5.89 16
11 C 0.24 7.84 5.16 38.21 0.20 8.03 16
12 N -0.66 -23.62 3.32 -179.78 -0.60 -24.21 16
13 C 0.38 14.92 4.95 39.03 0.19 15.11 16
14 C -0.38 -14.40 6.86 23.09 0.16 -14.24 16
15 H 0.10 4.03 7.15 -2.91 -0.02 4.01 16
16 C 0.05 1.81 4.82 85.55 0.41 2.22 16
17 N -0.72 -24.79 11.05 21.98 0.24 -24.55 16
18 Si 0.97 27.93 29.58 68.60 2.03 29.95 16
19 H -0.26 -7.66 7.11 99.48 0.71 -6.96 16
20 H -0.26 -7.38 7.11 99.48 0.71 -6.68 16
21 H -0.25 -7.12 7.11 99.48 0.71 -6.41 16
22 C -0.33 -13.91 5.88 -20.07 -0.12 -14.03 16
23 C 0.32 14.02 14.82 88.34 1.31 15.33 16
24 N -0.56 -25.54 18.53 18.99 0.35 -25.19 16
25 C 0.33 14.82 13.97 88.33 1.23 16.05 16
26 N -0.56 -26.36 18.54 19.01 0.35 -26.01 16
27 C -0.18 -5.10 9.55 22.40 0.21 -4.89 16
28 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16
29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
30 H 0.05 0.84 8.10 -2.38 -0.02 0.83 16
31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16
33 H 0.41 6.72 8.46 -92.71 -0.78 5.94 16
34 H 0.07 1.70 8.08 -2.38 -0.02 1.68 16
35 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16
36 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16
37 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16
38 H 0.12 4.09 6.26 -2.91 -0.02 4.07 16
39 H 0.40 14.03 8.84 -92.70 -0.82 13.21 16
40 H 0.31 9.73 8.29 -92.71 -0.77 8.96 16
41 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16
Total: -1.00 -54.54 372.71 5.41 -49.13
By element:
Atomic # 1 Polarization: 33.23 SS G_CDS: -0.50 Total: 32.73 kcal
Atomic # 6 Polarization: 17.25 SS G_CDS: 6.17 Total: 23.41 kcal
Atomic # 7 Polarization: -114.63 SS G_CDS: -2.24 Total: -116.87 kcal
Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal
Atomic # 14 Polarization: 27.93 SS G_CDS: 2.03 Total: 29.95 kcal
Total: -54.54 5.41 -49.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169079473.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.148 kcal
(2) G-P(sol) polarization free energy of solvation -54.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds