Wall clock time and date at job start Tue Mar 31 2020 14:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47120 * 2 1 4 4 N 1.46502 * 109.47052 * 240.00013 * 2 1 3 5 5 C 1.38820 * 120.00010 * 85.00143 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47382 * 89.99712 * 14 12 10 16 16 H 1.48501 * 109.47313 * 210.00151 * 14 12 10 17 17 H 1.48508 * 109.47126 * 329.99826 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50697 * 109.46813 * 119.99973 * 2 1 3 20 20 C 1.38716 * 119.78440 * 79.73210 * 19 2 1 21 21 C 1.37672 * 120.50399 * 179.71735 * 20 19 2 22 22 C 1.39700 * 119.77651 * 0.54577 * 21 20 19 23 23 N 1.35906 * 133.44911 * 179.72280 * 22 21 20 24 24 C 1.30750 * 109.62475 * 180.02562 * 23 22 21 25 25 O 1.35283 * 125.03427 * 180.02562 * 24 23 22 26 26 N 1.36384 * 109.93881 * 0.02562 * 24 23 22 27 27 H 0.97000 * 126.37300 * 180.02562 * 26 24 23 28 28 C 1.38448 * 107.26373 * 359.97438 * 26 24 23 29 29 C 1.37934 * 119.78267 * 259.99804 * 19 2 1 30 30 H 1.08999 * 109.46694 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46877 * 299.99892 * 1 2 3 32 32 H 1.09000 * 109.47039 * 59.99922 * 1 2 3 33 33 H 0.96996 * 119.99993 * 265.00087 * 4 2 1 34 34 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 36 36 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 37 37 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 38 38 H 1.08006 * 119.75055 * 359.97438 * 20 19 2 39 39 H 1.08000 * 120.11109 * 180.27719 * 21 20 19 40 40 H 0.96696 * 113.99787 * 89.96867 * 25 24 23 41 41 H 1.07995 * 120.08209 * 0.02562 * 29 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1510 0.0019 -2.3920 6 6 1.8155 1.3581 -2.4450 7 6 1.9492 2.0477 -3.6398 8 6 2.4090 1.3655 -4.7526 9 6 2.7351 0.0035 -4.6342 10 6 3.2109 -0.7049 -5.7607 11 1 3.3271 -0.1985 -6.7075 12 6 3.5317 -2.0633 -5.6493 13 7 3.3915 -2.6763 -4.5030 14 14 4.1600 -2.9998 -7.1385 15 1 5.6413 -2.9094 -7.1913 16 1 3.7544 -4.4245 -7.0346 17 1 3.5837 -2.4099 -8.3735 18 7 2.5921 -0.6281 -3.4642 19 6 2.0323 -0.7104 1.2305 20 6 2.0596 -2.0969 1.2627 21 6 2.5210 -2.7611 2.3769 22 6 2.9544 -2.0338 3.4882 23 7 3.4457 -2.3896 4.7043 24 6 3.7085 -1.3161 5.4030 25 8 4.2108 -1.3106 6.6591 26 7 3.4013 -0.2026 4.6779 27 1 3.5028 0.7179 4.9665 28 6 2.9185 -0.6302 3.4528 29 6 2.4567 0.0223 2.3193 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 1.4558 1.8646 -1.5616 35 1 1.6951 3.0956 -3.7022 36 1 2.5198 1.8742 -5.6987 37 1 3.6141 -3.6172 -4.4257 38 1 1.7203 -2.6597 0.4056 39 1 2.5436 -3.8407 2.3935 40 1 5.1770 -1.2968 6.6962 41 1 2.4286 1.1015 2.2899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325710817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:18 Heat of formation + Delta-G solvation = 78.615300 kcal Electronic energy + Delta-G solvation = -25833.252455 eV Core-core repulsion = 22100.316885 eV Total energy + Delta-G solvation = -3732.935570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29901 -39.03369 -38.16577 -37.21356 -35.03377 -33.49277 -33.20830 -31.23603 -30.19826 -29.92390 -28.22082 -27.92723 -25.37788 -23.64115 -23.14151 -21.86145 -21.57133 -21.18125 -20.00872 -19.24931 -17.63741 -17.48597 -16.98936 -16.68791 -15.92291 -15.23290 -14.97951 -14.57827 -14.45215 -14.11334 -14.00752 -13.86112 -13.57361 -13.22930 -13.00598 -12.67593 -12.39433 -12.03557 -11.88147 -11.79901 -11.63054 -11.36609 -11.18272 -10.97212 -10.85896 -10.83438 -10.57544 -10.38172 -10.17451 -9.89367 -9.51176 -8.90845 -8.49102 -8.15471 -7.90344 -7.49248 -6.51557 -6.31104 -4.45690 0.71892 1.38449 2.10296 2.47261 2.89076 3.12743 3.15721 3.25200 3.31326 3.50523 3.71906 3.99924 4.16994 4.35542 4.76627 4.86401 4.87785 5.09932 5.21929 5.27550 5.41082 5.60321 5.66161 5.86714 5.93026 6.08089 6.10390 6.14947 6.18638 6.29178 6.46239 6.47546 6.49648 6.65713 6.73804 6.86845 6.91314 6.96773 7.26819 7.31643 7.54809 7.60957 7.82211 7.93272 8.18060 8.37590 8.68905 8.81851 9.13378 10.26193 10.41952 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002797 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.747983 B =10008.409784 C =11051.101491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.203 3.797 3 H 0.085 0.915 4 N -0.731 5.731 5 C 0.414 3.586 6 C -0.369 4.369 7 C -0.032 4.032 8 C -0.317 4.317 9 C 0.293 3.707 10 C -0.434 4.434 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.715 5.715 14 Si 0.904 3.096 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.262 1.262 18 N -0.531 5.531 19 C -0.053 4.053 20 C -0.108 4.108 21 C -0.061 4.061 22 C 0.052 3.948 23 N -0.484 5.484 24 C 0.444 3.556 25 O -0.445 6.445 26 N -0.603 5.603 27 H 0.422 0.578 28 C 0.061 3.939 29 C -0.105 4.105 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.270 0.730 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.409 0.591 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 2.891 16.941 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.096 3.904 3 H 0.103 0.897 4 N -0.368 5.368 5 C 0.175 3.825 6 C -0.394 4.394 7 C -0.057 4.057 8 C -0.340 4.340 9 C 0.166 3.834 10 C -0.466 4.466 11 H 0.100 0.900 12 C -0.154 4.154 13 N -0.336 5.336 14 Si 0.729 3.271 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.186 1.186 18 N -0.252 5.252 19 C -0.056 4.056 20 C -0.129 4.129 21 C -0.080 4.080 22 C -0.065 4.065 23 N -0.216 5.216 24 C 0.140 3.860 25 O -0.246 6.246 26 N -0.228 5.228 27 H 0.261 0.739 28 C -0.048 4.048 29 C -0.126 4.126 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.267 0.733 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.370 1.048 17.701 17.736 hybrid contribution 0.702 1.521 -0.579 1.772 sum 0.332 2.568 17.122 17.317 Atomic orbital electron populations 1.22289 0.95354 1.02448 1.01967 1.19487 0.93325 0.95936 0.81638 0.89708 1.44256 1.74331 1.12254 1.05997 1.18480 0.89779 0.87544 0.86747 1.20619 1.25122 0.95122 0.98584 1.20595 0.95242 0.96897 0.92929 1.21525 1.17421 0.97081 0.98004 1.18189 0.87300 0.88079 0.89859 1.19578 1.37126 0.93999 0.95899 0.89952 1.26037 0.94465 0.98247 0.96620 1.70143 1.29704 1.09929 1.23837 0.86392 0.79680 0.78837 0.82240 1.19547 1.20241 1.18643 1.68203 1.23400 1.36008 0.97612 1.19839 0.97292 0.93755 0.94690 1.20831 1.00297 0.93749 0.97998 1.20254 0.97672 0.99911 0.90191 1.18779 1.04313 0.90422 0.93016 1.70640 1.20997 1.25916 1.04060 1.20303 0.98808 0.81771 0.85133 1.84824 1.27941 1.94592 1.17256 1.43355 1.56663 1.09789 1.12968 0.73920 1.18539 1.04056 0.95133 0.87063 1.19688 1.02715 0.99561 0.90649 0.92342 0.92570 0.91312 0.76794 0.89086 0.89037 0.88802 0.91932 0.84602 0.84890 0.73304 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.37 37.16 0.35 -1.84 16 2 C 0.20 3.02 2.45 -69.08 -0.17 2.85 16 3 H 0.09 1.27 6.28 -51.93 -0.33 0.95 16 4 N -0.73 -13.99 5.18 -55.03 -0.29 -14.27 16 5 C 0.41 9.78 7.63 -155.33 -1.18 8.60 16 6 C -0.37 -8.18 8.84 -38.86 -0.34 -8.52 16 7 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 8 C -0.32 -7.95 9.83 -38.65 -0.38 -8.33 16 9 C 0.29 8.07 6.55 -85.00 -0.56 7.52 16 10 C -0.43 -11.70 9.14 -37.74 -0.34 -12.04 16 11 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 12 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 13 N -0.71 -18.81 11.46 55.55 0.64 -18.17 16 14 Si 0.90 18.69 29.56 -169.99 -5.02 13.66 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 18 N -0.53 -14.41 7.89 -10.33 -0.08 -14.50 16 19 C -0.05 -0.71 4.96 -104.56 -0.52 -1.23 16 20 C -0.11 -1.43 9.01 -39.61 -0.36 -1.78 16 21 C -0.06 -0.79 10.10 -39.24 -0.40 -1.19 16 22 C 0.05 0.72 7.22 -84.68 -0.61 0.11 16 23 N -0.48 -6.74 11.31 -12.24 -0.14 -6.87 16 24 C 0.44 4.80 9.39 -88.93 -0.84 3.96 16 25 O -0.44 -3.37 13.63 -17.54 -0.24 -3.60 16 26 N -0.60 -5.70 6.26 -11.90 -0.07 -5.77 16 27 H 0.42 2.50 8.96 -40.82 -0.37 2.13 16 28 C 0.06 0.74 7.30 -83.87 -0.61 0.13 16 29 C -0.10 -1.24 9.67 -39.52 -0.38 -1.63 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.04 7.64 -51.93 -0.40 0.65 16 33 H 0.40 7.63 6.98 -40.82 -0.29 7.34 16 34 H 0.09 1.76 6.04 -52.49 -0.32 1.45 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.27 6.45 8.29 -40.82 -0.34 6.12 16 38 H 0.14 1.74 6.91 -52.48 -0.36 1.37 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.41 0.87 9.06 45.56 0.41 1.28 16 41 H 0.13 1.23 8.03 -52.49 -0.42 0.81 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -33.26 350.22 -10.49 -43.75 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -3.72 Total: 13.30 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -6.84 Total: -12.81 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.06 Total: -59.58 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.24 Total: -3.60 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.26 -10.49 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.369 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds