Wall clock time and date at job start Tue Mar 31 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47120 * 2 1 4 4 N 1.46502 * 109.47052 * 240.00013 * 2 1 3 5 5 C 1.38820 * 120.00010 * 85.00143 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47382 * 89.99712 * 14 12 10 16 16 H 1.48501 * 109.47313 * 210.00151 * 14 12 10 17 17 H 1.48508 * 109.47126 * 329.99826 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50697 * 109.46813 * 119.99973 * 2 1 3 20 20 C 1.38716 * 119.78440 * 79.73210 * 19 2 1 21 21 C 1.37672 * 120.50399 * 179.71735 * 20 19 2 22 22 C 1.39700 * 119.77651 * 0.54577 * 21 20 19 23 23 N 1.35906 * 133.44911 * 179.72280 * 22 21 20 24 24 C 1.30750 * 109.62475 * 180.02562 * 23 22 21 25 25 O 1.35283 * 125.03427 * 180.02562 * 24 23 22 26 26 N 1.36384 * 109.93881 * 0.02562 * 24 23 22 27 27 H 0.97000 * 126.37300 * 180.02562 * 26 24 23 28 28 C 1.38448 * 107.26373 * 359.97438 * 26 24 23 29 29 C 1.37934 * 119.78267 * 259.99804 * 19 2 1 30 30 H 1.08999 * 109.46694 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46877 * 299.99892 * 1 2 3 32 32 H 1.09000 * 109.47039 * 59.99922 * 1 2 3 33 33 H 0.96996 * 119.99993 * 265.00087 * 4 2 1 34 34 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 36 36 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 37 37 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 38 38 H 1.08006 * 119.75055 * 359.97438 * 20 19 2 39 39 H 1.08000 * 120.11109 * 180.27719 * 21 20 19 40 40 H 0.96696 * 113.99787 * 89.96867 * 25 24 23 41 41 H 1.07995 * 120.08209 * 0.02562 * 29 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1510 0.0019 -2.3920 6 6 1.8155 1.3581 -2.4450 7 6 1.9492 2.0477 -3.6398 8 6 2.4090 1.3655 -4.7526 9 6 2.7351 0.0035 -4.6342 10 6 3.2109 -0.7049 -5.7607 11 1 3.3271 -0.1985 -6.7075 12 6 3.5317 -2.0633 -5.6493 13 7 3.3915 -2.6763 -4.5030 14 14 4.1600 -2.9998 -7.1385 15 1 5.6413 -2.9094 -7.1913 16 1 3.7544 -4.4245 -7.0346 17 1 3.5837 -2.4099 -8.3735 18 7 2.5921 -0.6281 -3.4642 19 6 2.0323 -0.7104 1.2305 20 6 2.0596 -2.0969 1.2627 21 6 2.5210 -2.7611 2.3769 22 6 2.9544 -2.0338 3.4882 23 7 3.4457 -2.3896 4.7043 24 6 3.7085 -1.3161 5.4030 25 8 4.2108 -1.3106 6.6591 26 7 3.4013 -0.2026 4.6779 27 1 3.5028 0.7179 4.9665 28 6 2.9185 -0.6302 3.4528 29 6 2.4567 0.0223 2.3193 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 1.4558 1.8646 -1.5616 35 1 1.6951 3.0956 -3.7022 36 1 2.5198 1.8742 -5.6987 37 1 3.6141 -3.6172 -4.4257 38 1 1.7203 -2.6597 0.4056 39 1 2.5436 -3.8407 2.3935 40 1 5.1770 -1.2968 6.6962 41 1 2.4286 1.1015 2.2899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:17 Heat of formation + Delta-G solvation = 54.076604 kcal Electronic energy + Delta-G solvation = -25834.316532 eV Core-core repulsion = 22100.316885 eV Total energy + Delta-G solvation = -3733.999647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.18238 -40.38185 -39.44432 -38.19727 -36.37100 -35.13228 -34.28640 -32.74918 -31.91024 -30.99322 -29.66884 -29.12480 -27.23474 -24.72774 -24.11671 -23.30861 -22.84907 -22.52603 -21.41951 -20.03536 -19.23870 -18.50410 -18.23424 -17.96424 -16.99583 -16.62468 -16.50125 -16.02461 -15.74781 -15.41590 -15.01432 -14.95342 -14.90247 -14.69553 -14.40108 -14.06902 -13.68960 -13.53785 -13.12762 -12.85789 -12.77457 -12.71601 -12.68642 -12.53050 -12.36879 -12.11591 -11.87610 -11.79819 -11.67773 -11.26791 -11.09622 -10.63852 -9.78687 -9.43163 -9.37531 -9.11388 -8.24266 -8.18357 -6.42864 -0.19021 0.41244 1.10987 1.31455 1.41229 1.43237 1.55911 1.60656 1.61387 2.27316 2.59401 2.75924 2.84286 2.97201 3.47800 3.71263 4.04670 4.09133 4.12667 4.25244 4.33506 4.40259 4.47323 4.49991 4.64288 4.75012 4.90597 4.98255 5.02283 5.05760 5.07029 5.17669 5.24785 5.32783 5.38822 5.42769 5.57958 5.76835 5.77989 5.92102 6.02743 6.14090 6.27417 6.61874 6.65922 6.69956 6.88650 6.99706 7.27827 8.40183 8.55764 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002797 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.747983 B =10008.409784 C =11051.101491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.205 3.795 3 H 0.090 0.910 4 N -0.726 5.726 5 C 0.400 3.600 6 C -0.362 4.362 7 C -0.031 4.031 8 C -0.347 4.347 9 C 0.260 3.740 10 C -0.473 4.473 11 H 0.084 0.916 12 C 0.027 3.973 13 N -0.750 5.750 14 Si 0.983 3.017 15 H -0.265 1.265 16 H -0.269 1.269 17 H -0.258 1.258 18 N -0.566 5.566 19 C -0.067 4.067 20 C -0.112 4.112 21 C -0.073 4.073 22 C 0.033 3.967 23 N -0.528 5.528 24 C 0.462 3.538 25 O -0.442 6.442 26 N -0.586 5.586 27 H 0.440 0.560 28 C 0.055 3.945 29 C -0.092 4.092 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.392 0.608 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.275 0.725 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.434 0.566 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 4.180 18.677 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.100 3.900 3 H 0.108 0.892 4 N -0.362 5.362 5 C 0.159 3.841 6 C -0.388 4.388 7 C -0.055 4.055 8 C -0.370 4.370 9 C 0.133 3.867 10 C -0.505 4.505 11 H 0.102 0.898 12 C -0.195 4.195 13 N -0.372 5.372 14 Si 0.803 3.197 15 H -0.190 1.190 16 H -0.194 1.194 17 H -0.182 1.182 18 N -0.289 5.289 19 C -0.069 4.069 20 C -0.133 4.133 21 C -0.093 4.093 22 C -0.084 4.084 23 N -0.261 5.261 24 C 0.156 3.844 25 O -0.248 6.248 26 N -0.212 5.212 27 H 0.283 0.717 28 C -0.055 4.055 29 C -0.113 4.113 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.297 0.703 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.223 2.385 19.506 19.653 hybrid contribution 0.658 1.199 -0.828 1.599 sum 0.436 3.584 18.678 19.024 Atomic orbital electron populations 1.22217 0.94215 1.02438 1.02506 1.19652 0.94086 0.95789 0.80503 0.89205 1.44461 1.73575 1.12151 1.06002 1.18912 0.89284 0.88642 0.87262 1.20989 1.23540 0.94608 0.99637 1.21018 0.93695 0.98596 0.92177 1.21669 1.19234 0.96710 0.99371 1.18644 0.88083 0.89473 0.90539 1.19907 1.39020 0.95378 0.96197 0.89809 1.26902 0.94185 0.98612 0.99774 1.70240 1.30587 1.10442 1.25935 0.85211 0.78987 0.77348 0.78113 1.18977 1.19354 1.18153 1.68164 1.24894 1.37316 0.98490 1.19670 0.98963 0.93647 0.94667 1.20807 1.00560 0.94035 0.97900 1.20333 0.98246 1.00353 0.90340 1.19027 1.04518 0.91570 0.93282 1.70604 1.23084 1.27697 1.04720 1.20375 0.97102 0.81533 0.85359 1.84799 1.30304 1.94390 1.15273 1.43242 1.55607 1.10580 1.11800 0.71738 1.18570 1.04292 0.94585 0.88033 1.19861 1.00968 1.00754 0.89736 0.92741 0.89619 0.92994 0.77270 0.85800 0.85365 0.88304 0.91434 0.85124 0.84425 0.70274 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.37 71.98 0.67 -3.26 16 2 C 0.21 5.78 2.45 44.25 0.11 5.89 16 3 H 0.09 2.45 6.28 -2.38 -0.01 2.43 16 4 N -0.73 -27.81 5.18 -328.00 -1.70 -29.51 16 5 C 0.40 18.97 7.63 133.42 1.02 19.99 16 6 C -0.36 -15.58 8.84 22.73 0.20 -15.38 16 7 C -0.03 -1.35 10.15 22.39 0.23 -1.13 16 8 C -0.35 -17.66 9.83 22.87 0.22 -17.44 16 9 C 0.26 14.83 6.55 40.18 0.26 15.09 16 10 C -0.47 -26.46 9.14 23.46 0.21 -26.25 16 11 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 12 C 0.03 1.41 5.50 85.29 0.47 1.88 16 13 N -0.75 -40.79 11.46 21.84 0.25 -40.54 16 14 Si 0.98 39.12 29.56 68.60 2.03 41.15 16 15 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 N -0.57 -31.68 7.89 -186.59 -1.47 -33.15 16 19 C -0.07 -1.69 4.96 -19.82 -0.10 -1.79 16 20 C -0.11 -2.97 9.01 22.25 0.20 -2.77 16 21 C -0.07 -1.93 10.10 22.49 0.23 -1.70 16 22 C 0.03 0.90 7.22 39.40 0.28 1.18 16 23 N -0.53 -14.14 11.31 -306.48 -3.47 -17.60 16 24 C 0.46 8.93 9.39 179.76 1.69 10.61 16 25 O -0.44 -5.44 13.63 -85.69 -1.17 -6.61 16 26 N -0.59 -9.42 6.26 -302.47 -1.89 -11.32 16 27 H 0.44 3.66 8.96 -92.71 -0.83 2.83 16 28 C 0.05 1.22 7.30 38.75 0.28 1.50 16 29 C -0.09 -1.96 9.67 22.31 0.22 -1.74 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 33 H 0.39 15.52 6.98 -92.71 -0.65 14.88 16 34 H 0.12 4.42 6.04 -2.91 -0.02 4.41 16 35 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 37 H 0.28 13.57 8.29 -92.71 -0.77 12.80 16 38 H 0.13 3.48 6.91 -2.91 -0.02 3.46 16 39 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 40 H 0.43 0.48 9.06 -74.06 -0.67 -0.19 16 41 H 0.15 2.37 8.03 -2.91 -0.02 2.34 16 Total: -1.00 -74.40 350.22 -2.24 -76.64 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.02 Total: 36.22 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 6.20 Total: -15.29 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -8.28 Total: -132.12 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -1.17 Total: -6.61 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -74.40 -2.24 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.721 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds