Wall clock time and date at job start Tue Mar 31 2020 15:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.50699 * 109.46610 * 65.00295 * 4 2 1 6 6 C 1.38243 * 120.00559 * 264.71879 * 5 4 2 7 7 C 1.38214 * 120.01294 * 179.77092 * 6 5 4 8 8 C 1.38268 * 120.02445 * 0.51170 * 7 6 5 9 9 C 1.38185 * 120.01355 * 359.74631 * 8 7 6 10 10 C 1.38330 * 120.01049 * 85.00271 * 5 4 2 11 11 Cl 1.73599 * 120.00873 * 359.95060 * 10 5 4 12 12 C 1.50699 * 109.47078 * 120.00495 * 2 1 3 13 13 O 1.21282 * 120.00040 * 119.99506 * 12 2 1 14 14 N 1.34779 * 120.00033 * 300.00110 * 12 2 1 15 15 C 1.46500 * 120.00165 * 179.97438 * 14 12 2 16 16 H 1.09001 * 109.46886 * 324.99885 * 15 14 12 17 17 C 1.53002 * 109.47146 * 84.99328 * 15 14 12 18 18 C 1.52995 * 109.47363 * 205.00012 * 15 14 12 19 19 N 1.46496 * 109.47272 * 54.99542 * 18 15 14 20 20 C 1.36939 * 120.00101 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00006 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99776 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00192 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99836 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47203 * 89.99330 * 24 22 20 26 26 H 1.48492 * 109.46853 * 209.99897 * 24 22 20 27 27 H 1.48504 * 109.46881 * 329.99507 * 24 22 20 28 28 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 31 31 H 1.08992 * 109.47046 * 185.00032 * 4 2 1 32 32 H 1.08997 * 109.47395 * 305.00572 * 4 2 1 33 33 H 1.07997 * 119.98997 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.99002 * 180.27470 * 7 6 5 35 35 H 1.07999 * 119.98881 * 179.76485 * 8 7 6 36 36 H 1.08005 * 120.00548 * 179.97438 * 9 8 7 37 37 H 0.96996 * 119.99850 * 359.97438 * 14 12 2 38 38 H 1.09006 * 109.46479 * 60.00161 * 17 15 14 39 39 H 1.09001 * 109.46947 * 180.02562 * 17 15 14 40 40 H 1.08999 * 109.47584 * 300.00425 * 17 15 14 41 41 H 1.09000 * 109.47483 * 175.00062 * 18 15 14 42 42 H 1.09003 * 109.47048 * 294.99947 * 18 15 14 43 43 H 0.97006 * 119.99758 * 0.02562 * 19 18 15 44 44 H 0.97008 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4765 6 6 0.4891 -0.2772 -3.1633 7 6 0.1208 0.4397 -4.2861 8 6 0.9100 1.4849 -4.7293 9 6 2.0648 1.8167 -4.0468 10 6 2.4313 1.1028 -2.9195 11 17 3.8816 1.5194 -2.0612 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7067 -0.2502 2.4546 15 6 2.1945 -0.9412 3.6507 16 1 2.2308 -2.0140 3.4611 17 6 3.5973 -0.4365 3.9948 18 6 1.2504 -0.6619 4.8218 19 7 -0.1157 -1.0356 4.4476 20 6 -1.1395 -0.8732 5.3424 21 1 -0.9398 -0.4692 6.3239 22 6 -2.4339 -1.2279 4.9880 23 7 -2.6773 -1.7198 3.7917 24 14 -3.8306 -1.0057 6.2084 25 1 -4.4214 0.3468 6.0438 26 1 -4.8724 -2.0345 5.9610 27 1 -3.3081 -1.1527 7.5907 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1262 -0.7995 -1.2056 32 1 1.6053 -1.7197 -1.2953 33 1 -0.1256 -1.0961 -2.8199 34 1 -0.7818 0.1809 -4.8197 35 1 0.6237 2.0422 -5.6090 36 1 2.6815 2.6328 -4.3933 37 1 1.1493 0.5387 2.5436 38 1 3.5610 0.6364 4.1843 39 1 3.9604 -0.9510 4.8845 40 1 4.2699 -0.6355 3.1605 41 1 1.5627 -1.2459 5.6875 42 1 1.2820 0.3993 5.0688 43 1 -0.2951 -1.3982 3.5659 44 1 -3.5819 -1.9673 3.5439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699421033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:25 Heat of formation + Delta-G solvation = -27.729743 kcal Electronic energy + Delta-G solvation = -25122.314128 eV Core-core repulsion = 21485.874585 eV Total energy + Delta-G solvation = -3636.439543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.11053 -39.26667 -36.57872 -36.30711 -34.86128 -33.62072 -31.70544 -30.94660 -30.64417 -29.64534 -26.73833 -25.68884 -23.95663 -22.86883 -22.60632 -21.54777 -20.34678 -19.60063 -17.39399 -17.18227 -16.66256 -15.92420 -15.89702 -15.41566 -14.93574 -14.67185 -14.21763 -14.06947 -13.73183 -13.68732 -13.33187 -13.18769 -13.10020 -12.55525 -12.31518 -12.22158 -12.04836 -12.03097 -11.74908 -11.66260 -11.56098 -11.53233 -11.09546 -10.91913 -10.87105 -10.83312 -10.77257 -10.43655 -10.05831 -9.75109 -9.38468 -9.08873 -8.92686 -8.81946 -8.62100 -6.96719 -5.79380 -3.08751 0.93983 1.04397 1.99219 3.01700 3.36296 3.41116 3.46816 3.48309 3.61271 4.51477 4.56513 4.56887 4.74558 4.89082 5.02692 5.05387 5.18057 5.19764 5.30466 5.44197 5.48495 5.53641 5.57845 5.66728 5.68822 5.75607 5.95035 5.95949 6.01446 6.05040 6.12170 6.17732 6.20689 6.23288 6.29035 6.42217 6.45016 6.51389 6.58894 6.72620 7.00565 7.67023 7.94354 8.38619 8.62266 9.50656 10.06804 10.42733 11.42865 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.003200 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.910153 B = 8748.210914 C =10215.166511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.067 4.067 5 C -0.064 4.064 6 C -0.101 4.101 7 C -0.114 4.114 8 C -0.116 4.116 9 C -0.111 4.111 10 C -0.035 4.035 11 Cl -0.068 7.068 12 C 0.521 3.479 13 O -0.550 6.550 14 N -0.709 5.709 15 C 0.133 3.867 16 H 0.086 0.914 17 C -0.157 4.157 18 C 0.144 3.856 19 N -0.731 5.731 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.403 0.597 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.386 0.614 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.219 7.822 -16.502 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.104 4.104 5 C -0.065 4.065 6 C -0.119 4.119 7 C -0.132 4.132 8 C -0.134 4.134 9 C -0.130 4.130 10 C -0.062 4.062 11 Cl -0.039 7.039 12 C 0.307 3.693 13 O -0.428 6.428 14 N -0.360 5.360 15 C 0.028 3.972 16 H 0.104 0.896 17 C -0.216 4.216 18 C 0.016 3.984 19 N -0.376 5.376 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.220 0.780 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.757 7.176 -16.320 20.822 hybrid contribution -1.109 0.487 0.510 1.314 sum 9.648 7.663 -15.810 20.044 Atomic orbital electron populations 1.21841 0.92037 1.03548 1.02921 1.21211 0.98196 1.00490 0.92394 0.88866 1.20482 1.02737 0.98217 0.88975 1.19833 0.94382 0.95028 0.97244 1.21153 0.95629 1.00158 0.95003 1.21272 0.99775 0.95588 0.96550 1.21088 0.94462 0.97836 1.00033 1.21027 0.97706 0.99885 0.94360 1.20873 0.90716 0.98579 0.96020 1.98374 1.36148 1.92675 1.76703 1.20438 0.79772 0.84366 0.84691 1.90657 1.38715 1.26487 1.86945 1.45986 1.52835 1.32000 1.05189 1.21221 0.93121 0.97887 0.84962 0.89616 1.22098 0.96676 1.01195 1.01612 1.20980 0.85909 0.97724 0.93793 1.42352 1.01248 1.77155 1.16848 1.19217 0.87114 1.35555 0.95457 0.91202 1.24730 0.97403 1.01712 0.96897 1.69663 1.20028 1.49018 1.19130 0.86204 0.82355 0.77256 0.80436 1.21742 1.21786 1.20795 0.91830 0.91490 0.91234 0.89467 0.89710 0.84790 0.85405 0.85335 0.85158 0.76192 0.92651 0.91755 0.92482 0.94966 0.95854 0.77957 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.74 37.16 0.32 -1.64 16 2 C -0.10 -1.35 2.71 -91.77 -0.25 -1.60 16 3 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 4 C -0.07 -0.84 3.69 -27.88 -0.10 -0.95 16 5 C -0.06 -0.71 4.56 -104.59 -0.48 -1.19 16 6 C -0.10 -1.00 8.37 -39.59 -0.33 -1.33 16 7 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 8 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 9 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 10 C -0.04 -0.38 6.31 -39.50 -0.25 -0.63 16 11 Cl -0.07 -0.75 27.20 -51.86 -1.41 -2.16 16 12 C 0.52 8.57 7.12 -10.99 -0.08 8.49 16 13 O -0.55 -10.66 15.58 5.56 0.09 -10.57 16 14 N -0.71 -11.52 4.41 -53.81 -0.24 -11.76 16 15 C 0.13 2.27 2.73 -67.93 -0.19 2.08 16 16 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 17 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 18 C 0.14 2.81 5.82 -4.05 -0.02 2.79 16 19 N -0.73 -17.97 5.43 -59.91 -0.33 -18.29 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 24 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.06 0.75 6.53 -51.93 -0.34 0.41 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.01 7.56 -51.93 -0.39 0.62 16 31 H 0.09 1.19 6.94 -51.93 -0.36 0.83 16 32 H 0.08 1.11 8.05 -51.93 -0.42 0.70 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.40 6.26 8.02 -40.82 -0.33 5.93 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.39 10.09 7.33 -40.82 -0.30 9.79 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -31.32 378.70 -9.65 -40.96 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.72 Total: 12.89 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.45 Total: -7.09 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.16 Total: -56.77 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.32 -9.65 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699421033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.234 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds