Wall clock time and date at job start Tue Mar 31 2020 14:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00097 * 2 1 4 4 C 1.50706 * 109.47256 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99507 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.48114 * 127.02958 * 179.71139 * 6 4 3 8 8 C 1.54603 * 103.42277 * 219.28688 * 7 6 4 9 9 H 1.08994 * 110.57638 * 81.16809 * 8 7 6 10 10 C 1.50698 * 110.98808 * 204.37786 * 8 7 6 11 11 C 1.34666 * 125.99574 * 28.36687 * 10 8 7 12 12 N 1.36880 * 106.81994 * 179.84770 * 11 10 8 13 13 C 1.46506 * 126.39565 * 180.11656 * 12 11 10 14 14 C 1.35042 * 107.20325 * 0.41415 * 12 11 10 15 15 N 1.30496 * 108.70096 * 359.73958 * 14 12 11 16 16 C 1.54621 * 102.90775 * 322.86763 * 8 7 6 17 17 H 1.08999 * 110.32963 * 262.80506 * 16 8 7 18 18 N 1.46499 * 110.41026 * 140.63342 * 16 8 7 19 19 C 1.36939 * 119.99738 * 157.87172 * 18 16 8 20 20 H 1.07994 * 120.00235 * 0.02562 * 19 18 16 21 21 C 1.38819 * 119.99776 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00081 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00001 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47261 * 60.00085 * 23 21 19 25 25 H 1.48496 * 109.47594 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47341 * 300.00448 * 23 21 19 27 27 C 1.47482 * 127.03332 * 0.02918 * 6 4 3 28 28 H 1.08989 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46813 * 299.99841 * 1 2 3 30 30 H 1.08998 * 109.47330 * 59.99409 * 1 2 3 31 31 H 1.09001 * 109.46713 * 60.00360 * 3 2 1 32 32 H 1.09000 * 109.47712 * 300.00668 * 3 2 1 33 33 H 1.08993 * 110.66657 * 337.77046 * 7 6 4 34 34 H 1.08998 * 110.66230 * 100.89027 * 7 6 4 35 35 H 1.08006 * 126.58694 * 359.95781 * 11 10 8 36 36 H 1.08999 * 109.46858 * 270.32509 * 13 12 11 37 37 H 1.08997 * 109.46945 * 30.32345 * 13 12 11 38 38 H 1.08996 * 109.46774 * 150.32867 * 13 12 11 39 39 H 1.07998 * 125.64841 * 179.72444 * 14 12 11 40 40 H 0.96998 * 120.00820 * 337.87756 * 18 16 8 41 41 H 0.97005 * 120.00170 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.91154 * 273.87343 * 27 6 4 43 43 H 1.08993 * 109.91714 * 35.15433 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7196 1.9374 0.0006 5 8 4.4404 0.9620 0.0006 6 7 4.2576 3.1731 0.0013 7 6 5.6978 3.5188 0.0079 8 6 5.7703 4.7360 0.9585 9 1 5.7785 4.4099 1.9984 10 6 6.9787 5.5845 0.6577 11 6 7.5812 5.7075 -0.5404 12 7 8.6292 6.5713 -0.3700 13 6 9.5715 7.0093 -1.4028 14 6 8.6363 6.9393 0.9293 15 7 7.6464 6.3453 1.5378 16 6 4.4678 5.5042 0.6358 17 1 4.6684 6.3098 -0.0705 18 7 3.8737 6.0405 1.8629 19 6 3.0092 7.1006 1.7984 20 1 2.7650 7.5409 0.8430 21 6 2.4466 7.6091 2.9611 22 7 2.7445 7.0728 4.1255 23 14 1.2668 9.0547 2.8732 24 1 0.0947 8.6870 2.0387 25 1 0.8100 9.4049 4.2420 26 1 1.9580 10.2218 2.2688 27 6 3.5327 4.4575 0.0020 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8032 2.2370 0.8900 32 1 1.8031 2.2372 -0.8899 33 1 6.2903 2.6914 0.3981 34 1 6.0318 3.7943 -0.9924 35 1 7.2918 5.2197 -1.4596 36 1 10.4179 6.3233 -1.4368 37 1 9.0712 7.0174 -2.3712 38 1 9.9264 8.0129 -1.1687 39 1 9.3441 7.6133 1.3887 40 1 4.0927 5.6449 2.7210 41 1 2.3517 7.4284 4.9381 42 1 3.2899 4.7473 -1.0203 43 1 2.6206 4.3687 0.5921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070465310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:31 Heat of formation + Delta-G solvation = 37.117103 kcal Electronic energy + Delta-G solvation = -25296.205604 eV Core-core repulsion = 21696.914489 eV Total energy + Delta-G solvation = -3599.291115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.95962 -41.01586 -38.86715 -35.79640 -35.02562 -33.46198 -32.46627 -31.04172 -29.65997 -29.26966 -28.78724 -27.38424 -25.89627 -24.41944 -22.24872 -22.03072 -20.70275 -20.40945 -19.07580 -18.29474 -17.97803 -17.46653 -17.01329 -16.67147 -16.38432 -16.17374 -15.70214 -15.40282 -15.19689 -14.84361 -14.83726 -14.56735 -14.42094 -14.28259 -13.78722 -13.66727 -13.51237 -13.31526 -13.28090 -13.15972 -13.04100 -12.81819 -12.56448 -12.47847 -12.16084 -11.84356 -11.68952 -11.17560 -10.97391 -10.93654 -10.73221 -10.37085 -9.80844 -9.28962 -8.89999 -8.71034 -7.88937 -5.18570 0.47066 1.19430 1.46940 1.49026 1.52088 1.57891 1.61627 1.95843 2.07607 2.23986 2.58977 3.35721 3.40864 3.54329 3.81356 3.95310 4.00186 4.04719 4.06741 4.13382 4.24909 4.33578 4.36930 4.38857 4.39567 4.46560 4.53309 4.63904 4.72397 4.78879 4.81572 4.91929 4.92763 5.06202 5.13894 5.38866 5.41223 5.56402 5.87006 6.29725 6.41467 6.44550 6.99400 7.31347 7.36766 8.10301 8.34410 9.34351 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.007229 B = 0.004849 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3872.123224 B = 5773.561846 C = 9116.876228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.254 6.254 3 C -0.107 4.107 4 C 0.545 3.455 5 O -0.567 6.567 6 N -0.609 5.609 7 C 0.128 3.872 8 C -0.016 4.016 9 H 0.055 0.945 10 C -0.006 4.006 11 C -0.045 4.045 12 N -0.460 5.460 13 C 0.068 3.932 14 C 0.174 3.826 15 N -0.538 5.538 16 C 0.181 3.819 17 H 0.066 0.934 18 N -0.723 5.723 19 C -0.235 4.235 20 H 0.082 0.918 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.302 1.302 26 H -0.282 1.282 27 C 0.084 3.916 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.204 0.796 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.231 0.769 40 H 0.370 0.630 41 H 0.248 0.752 42 H 0.093 0.907 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -4.471 -17.010 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.029 6.029 3 C -0.258 4.258 4 C 0.333 3.667 5 O -0.447 6.447 6 N -0.342 5.342 7 C 0.005 3.995 8 C -0.038 4.038 9 H 0.073 0.927 10 C -0.135 4.135 11 C -0.179 4.179 12 N -0.142 5.142 13 C -0.073 4.073 14 C -0.109 4.109 15 N -0.257 5.257 16 C 0.070 3.930 17 H 0.084 0.916 18 N -0.361 5.361 19 C -0.367 4.367 20 H 0.100 0.900 21 C -0.265 4.265 22 N -0.621 5.621 23 Si 0.799 3.201 24 H -0.198 1.198 25 H -0.228 1.228 26 H -0.208 1.208 27 C -0.042 4.042 28 H 0.136 0.864 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.220 0.780 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.247 0.753 40 H 0.201 0.799 41 H 0.057 0.943 42 H 0.111 0.889 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.580 -5.631 -16.382 18.909 hybrid contribution -1.170 1.788 0.386 2.171 sum 6.411 -3.843 -15.996 17.656 Atomic orbital electron populations 1.23566 0.91576 1.07856 1.06118 1.87515 1.09379 1.07828 1.98226 1.23410 0.95555 0.98185 1.08642 1.19665 0.89805 0.81409 0.75790 1.90698 1.63211 1.38710 1.52070 1.48676 1.08650 1.05167 1.71750 1.22353 0.81403 0.95613 1.00146 1.20460 0.91262 0.93201 0.98841 0.92676 1.20170 0.99380 1.02731 0.91175 1.22703 0.93322 1.01078 1.00801 1.45651 1.23993 1.34212 1.10380 1.22368 0.92185 1.02615 0.90091 1.25490 1.00171 1.03609 0.81600 1.70117 1.08061 1.12409 1.35107 1.21240 0.89536 0.93302 0.88926 0.91588 1.42593 1.52783 1.36972 1.03762 1.19579 1.17049 1.06891 0.93189 0.90012 1.25528 1.03253 1.02610 0.95152 1.69843 1.49328 1.45238 0.97646 0.85280 0.79248 0.79664 0.75953 1.19750 1.22840 1.20799 1.23256 0.96851 0.82171 1.01913 0.86380 0.89851 0.88836 0.86795 0.84707 0.90803 0.87687 0.77963 0.89105 0.88156 0.87783 0.75297 0.79868 0.94278 0.88890 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 10.76 113.37 1.22 -0.85 16 2 S -0.25 -6.85 21.52 -56.49 -1.22 -8.07 16 3 C -0.11 -2.84 5.50 71.24 0.39 -2.44 16 4 C 0.54 17.88 7.91 87.66 0.69 18.57 16 5 O -0.57 -22.37 16.07 -3.02 -0.05 -22.42 16 6 N -0.61 -18.74 3.29 -810.10 -2.67 -21.41 16 7 C 0.13 3.71 6.37 86.61 0.55 4.26 16 8 C -0.02 -0.58 3.28 -10.44 -0.03 -0.61 16 9 H 0.05 2.36 7.75 -2.39 -0.02 2.34 16 10 C -0.01 -0.18 6.04 41.39 0.25 0.07 16 11 C -0.05 -1.08 10.69 83.09 0.89 -0.19 16 12 N -0.46 -9.31 3.15 -552.53 -1.74 -11.05 16 13 C 0.07 0.58 11.18 127.77 1.43 2.00 16 14 C 0.17 4.58 12.56 180.26 2.26 6.85 16 15 N -0.54 -20.11 11.25 -188.32 -2.12 -22.23 16 16 C 0.18 6.79 3.20 45.88 0.15 6.94 16 17 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 18 N -0.72 -35.82 5.07 -318.72 -1.62 -37.44 16 19 C -0.24 -12.58 9.97 84.03 0.84 -11.74 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 22 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 23 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C 0.08 2.59 6.56 86.53 0.57 3.15 16 28 H 0.12 1.63 8.14 -2.40 -0.02 1.61 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 3.01 7.91 -2.39 -0.02 2.99 16 32 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.07 2.31 7.85 -2.39 -0.02 2.29 16 34 H 0.11 2.32 6.41 -2.39 -0.02 2.31 16 35 H 0.20 3.30 6.92 -2.91 -0.02 3.28 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.23 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.37 20.80 7.55 -92.71 -0.70 20.10 16 41 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.47 7.32 -2.39 -0.02 2.45 16 Total: -1.00 -81.16 372.65 2.89 -78.26 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.32 Total: 34.34 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 9.67 Total: 22.33 kcal Atomic # 7 Polarization: -143.99 SS G_CDS: -7.86 Total: -151.86 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.22 Total: -8.07 kcal Total: -81.16 2.89 -78.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070465310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.381 kcal (2) G-P(sol) polarization free energy of solvation -81.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds