Wall clock time and date at job start Tue Mar 31 2020 13:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 C 1.50706 * 109.46779 * 119.99417 * 2 1 3 5 5 O 1.21281 * 119.99699 * 119.99828 * 4 2 1 6 6 N 1.34773 * 120.00080 * 300.00319 * 4 2 1 7 7 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47237 * 179.72043 * 7 6 4 9 9 H 1.08995 * 109.47026 * 305.00375 * 8 7 6 10 10 C 1.53005 * 109.46813 * 65.00101 * 8 7 6 11 11 C 1.52994 * 109.47095 * 184.99775 * 8 7 6 12 12 N 1.46500 * 109.47237 * 175.00411 * 11 8 7 13 13 C 1.36936 * 120.00353 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00361 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99788 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00246 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47008 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47396 * 119.99831 * 17 15 13 20 20 H 1.48502 * 109.47281 * 239.99713 * 17 15 13 21 21 C 1.50690 * 109.47278 * 239.99380 * 2 1 3 22 22 C 1.38246 * 119.99055 * 299.73291 * 21 2 1 23 23 C 1.38214 * 120.01346 * 179.72664 * 22 21 2 24 24 C 1.38342 * 119.98720 * 0.54102 * 23 22 21 25 25 Cl 1.73604 * 120.01362 * 179.70553 * 24 23 22 26 26 C 1.38352 * 119.97710 * 359.73527 * 24 23 22 27 27 C 1.38221 * 119.98314 * 359.97438 * 26 24 23 28 28 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47281 * 300.00632 * 1 2 3 30 30 H 1.09002 * 109.46837 * 60.00443 * 1 2 3 31 31 H 0.97005 * 120.00161 * 359.72088 * 6 4 2 32 32 H 1.09001 * 109.46512 * 299.72412 * 7 6 4 33 33 H 1.08998 * 109.47174 * 59.71534 * 7 6 4 34 34 H 1.08991 * 109.47325 * 59.99870 * 10 8 7 35 35 H 1.09005 * 109.46643 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47034 * 299.99245 * 10 8 7 37 37 H 1.09004 * 109.47106 * 295.00088 * 11 8 7 38 38 H 1.09002 * 109.47509 * 55.00217 * 11 8 7 39 39 H 0.97002 * 119.99939 * 359.97438 * 12 11 8 40 40 H 0.97003 * 119.99905 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.98816 * 359.97438 * 22 21 2 42 42 H 1.08003 * 120.00394 * 180.26617 * 23 22 21 43 43 H 1.07998 * 120.00932 * 179.97438 * 26 24 23 44 44 H 1.07997 * 119.99238 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1954 -0.9400 3.6509 8 6 1.6909 -0.2147 4.9001 9 1 1.9829 0.8344 4.8538 10 6 0.1659 -0.3172 4.9683 11 6 2.3016 -0.8597 6.1458 12 7 1.9144 -0.0928 7.3324 13 6 2.3467 -0.4838 8.5715 14 1 2.9729 -1.3578 8.6741 15 6 1.9802 0.2431 9.6959 16 7 1.2176 1.3084 9.5709 17 14 2.5694 -0.2907 11.3862 18 1 3.4068 -1.5101 11.2562 19 1 3.3722 0.7988 11.9975 20 1 1.3971 -0.5855 12.2488 21 6 2.0324 -0.7105 -1.2303 22 6 1.7029 -2.0357 -1.4459 23 6 2.1587 -2.6862 -2.5770 24 6 2.9541 -2.0142 -3.4879 25 17 3.5333 -2.8328 -4.9050 26 6 3.2883 -0.6896 -3.2688 27 6 2.8269 -0.0384 -2.1403 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1523 0.5413 2.5436 32 1 1.8284 -1.9664 3.6535 33 1 3.2853 -0.9440 3.6483 34 1 -0.1261 -1.3663 5.0145 35 1 -0.1935 0.1999 5.8580 36 1 -0.2692 0.1424 4.0808 37 1 1.9385 -1.8831 6.2401 38 1 3.3879 -0.8664 6.0561 39 1 1.3523 0.6923 7.2404 40 1 0.9618 1.8166 10.3565 41 1 1.0858 -2.5615 -0.7324 42 1 1.8976 -3.7202 -2.7475 43 1 3.9095 -0.1646 -3.9793 44 1 3.0874 0.9957 -1.9693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753631091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:13 Heat of formation + Delta-G solvation = -26.738601 kcal Electronic energy + Delta-G solvation = -24063.003659 eV Core-core repulsion = 20426.607095 eV Total energy + Delta-G solvation = -3636.396564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59287 -39.11489 -37.01884 -36.67127 -34.51295 -34.25331 -32.44231 -31.39407 -30.16087 -29.45906 -26.64721 -25.61175 -24.66099 -23.18524 -22.70283 -21.76404 -20.43557 -19.65638 -17.63024 -17.37424 -16.86911 -16.36406 -15.90678 -15.37286 -15.23937 -14.65828 -14.45792 -14.16779 -14.07615 -13.80631 -13.65353 -13.58057 -13.17278 -12.96817 -12.74305 -12.61420 -12.34776 -12.14827 -12.06353 -11.77052 -11.55476 -11.44293 -11.10482 -11.08328 -10.94116 -10.73508 -10.59619 -10.44561 -10.06473 -9.85660 -9.68349 -9.30562 -9.07011 -8.90306 -8.88458 -6.94453 -5.79368 -3.07695 0.79884 1.01370 1.82428 2.53101 3.01662 3.42054 3.42126 3.48295 3.50195 4.15937 4.34831 4.56388 4.57422 4.62234 4.73728 4.84483 5.01751 5.02659 5.11386 5.18391 5.26616 5.35188 5.38142 5.42504 5.55798 5.63212 5.70213 5.77876 5.87846 5.92631 5.93520 5.96409 6.07854 6.20781 6.21177 6.35596 6.44330 6.47266 6.62021 6.74395 6.83710 7.42214 7.69223 8.12975 8.39825 9.51271 10.08326 10.43080 11.43677 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.001795 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.823555 B =15598.119881 C =15972.154416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.107 0.893 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.723 5.723 7 C 0.127 3.873 8 C -0.110 4.110 9 H 0.076 0.924 10 C -0.141 4.141 11 C 0.160 3.840 12 N -0.731 5.731 13 C -0.238 4.238 14 H 0.071 0.929 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.061 4.061 22 C -0.070 4.070 23 C -0.112 4.112 24 C -0.034 4.034 25 Cl -0.077 7.077 26 C -0.114 4.114 27 C -0.099 4.099 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -1.853 -28.964 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.125 0.875 4 C 0.299 3.701 5 O -0.409 6.409 6 N -0.374 5.374 7 C 0.003 3.997 8 C -0.129 4.129 9 H 0.094 0.906 10 C -0.198 4.198 11 C 0.032 3.968 12 N -0.375 5.375 13 C -0.370 4.370 14 H 0.089 0.911 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.061 4.061 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.061 4.061 25 Cl -0.048 7.048 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.235 0.765 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.109 -2.758 -29.015 29.167 hybrid contribution -0.004 0.354 0.953 1.017 sum -1.113 -2.404 -28.062 28.187 Atomic orbital electron populations 1.21816 0.91650 1.03309 1.03190 1.20331 0.97979 1.00408 0.90804 0.87508 1.20380 0.80475 0.84826 0.84423 1.90739 1.37421 1.26126 1.86651 1.46057 1.53719 1.31997 1.05670 1.21424 0.99213 0.96265 0.82796 1.21550 0.96649 1.00522 0.94218 0.90554 1.21790 0.94590 1.01991 1.01475 1.20576 0.96278 0.94437 0.85509 1.42342 1.61404 1.32450 1.01339 1.19289 1.24985 1.08557 0.84125 0.91090 1.24736 1.00569 0.97833 0.97923 1.69664 1.40763 1.19202 1.28676 0.86107 0.77844 0.77652 0.84547 1.20537 1.21873 1.21874 1.19420 0.97578 0.94343 0.94778 1.20895 0.98609 0.93704 0.95665 1.21026 0.97843 1.00445 0.93740 1.20935 1.00818 0.93702 0.90610 1.98369 1.87807 1.79168 1.39427 1.20972 1.00895 0.92855 0.98513 1.20979 0.97045 1.00161 0.93587 0.91675 0.91318 0.91075 0.76503 0.91346 0.91378 0.92822 0.91150 0.93929 0.96005 0.96145 0.78219 0.93584 0.85251 0.84981 0.84969 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.90 37.16 0.33 -0.52 16 2 C -0.07 -0.58 2.90 -92.92 -0.27 -0.85 16 3 H 0.11 0.63 7.88 -51.93 -0.41 0.22 16 4 C 0.51 5.80 7.02 -10.98 -0.08 5.72 16 5 O -0.53 -8.16 15.09 5.56 0.08 -8.08 16 6 N -0.72 -7.57 5.17 -60.29 -0.31 -7.88 16 7 C 0.13 1.65 5.06 -4.04 -0.02 1.63 16 8 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 9 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 10 C -0.14 -1.97 8.94 37.16 0.33 -1.64 16 11 C 0.16 3.12 5.65 -4.05 -0.02 3.09 16 12 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 13 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 14 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 17 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C -0.06 -0.55 4.40 -104.62 -0.46 -1.01 16 22 C -0.07 -0.68 7.92 -39.59 -0.31 -1.00 16 23 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 24 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 25 Cl -0.08 -0.67 28.96 -51.86 -1.50 -2.17 16 26 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 27 C -0.10 -0.81 9.67 -39.59 -0.38 -1.19 16 28 H 0.06 0.43 7.40 -51.93 -0.38 0.04 16 29 H 0.07 0.35 7.57 -51.93 -0.39 -0.05 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 3.26 7.08 -40.82 -0.29 2.97 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 36 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.13 1.23 7.52 -52.49 -0.39 0.83 16 42 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.76 7.94 -52.49 -0.42 0.34 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -32.67 378.74 -9.68 -42.35 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.66 Total: 6.51 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.38 Total: -8.23 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.09 Total: -53.38 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.67 -9.68 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753631091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.611 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds