Wall clock time and date at job start Tue Mar 31 2020 13:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.08997 * 109.47244 * 299.99932 * 18 16 15 20 20 C 1.53001 * 109.47182 * 60.00215 * 18 16 15 21 21 C 1.50695 * 109.47317 * 180.02562 * 18 16 15 22 22 C 1.38249 * 119.98606 * 299.72433 * 21 18 16 23 23 C 1.38215 * 120.01150 * 179.72396 * 22 21 18 24 24 C 1.38351 * 119.98911 * 0.55313 * 23 22 21 25 25 Cl 1.73595 * 120.01434 * 179.70407 * 24 23 22 26 26 C 1.38354 * 119.97342 * 359.72081 * 24 23 22 27 27 C 1.38221 * 119.98425 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 30 30 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.08997 * 109.46936 * 180.02562 * 20 18 16 39 39 H 1.09005 * 109.46628 * 299.99942 * 20 18 16 40 40 H 1.08997 * 109.47262 * 59.99728 * 20 18 16 41 41 H 1.07999 * 119.99296 * 0.02562 * 22 21 18 42 42 H 1.08000 * 120.00423 * 180.27418 * 23 22 21 43 43 H 1.08000 * 120.00971 * 179.97438 * 26 24 23 44 44 H 1.07997 * 119.99136 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.4152 0.2239 6.8982 12 1 1.0697 0.0908 7.4992 13 1 2.1727 -1.8181 6.4894 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 0.5110 0.4426 -4.9370 20 6 2.2064 1.7671 -4.8288 21 6 2.0996 -0.3452 -6.1237 22 6 3.4551 -0.5570 -6.2943 23 6 3.9160 -1.2135 -7.4199 24 6 3.0215 -1.6485 -8.3815 25 17 3.6003 -2.4663 -9.7992 26 6 1.6656 -1.4313 -8.2130 27 6 1.2055 -0.7793 -7.0845 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 1.9173 2.3300 -5.7163 39 1 1.8426 2.2807 -3.9388 40 1 3.2927 1.6897 -4.7850 41 1 4.1536 -0.2137 -5.5455 42 1 4.9746 -1.3828 -7.5509 43 1 0.9669 -1.7703 -8.9635 44 1 0.1470 -0.6101 -6.9526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753631092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:15 Heat of formation + Delta-G solvation = -26.663421 kcal Electronic energy + Delta-G solvation = -24051.540977 eV Core-core repulsion = 20415.147674 eV Total energy + Delta-G solvation = -3636.393304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59019 -39.11524 -37.01847 -36.67083 -34.51159 -34.25233 -32.43894 -31.39436 -30.16094 -29.44812 -26.66327 -25.59567 -24.65952 -23.18400 -22.70134 -21.76478 -20.42390 -19.67240 -17.63007 -17.36204 -16.85277 -16.37355 -15.88395 -15.47122 -15.18065 -14.65577 -14.46125 -14.09276 -14.07047 -13.84096 -13.67551 -13.62159 -13.06976 -13.03811 -12.77679 -12.54168 -12.35277 -12.16340 -12.05812 -11.78154 -11.54662 -11.44146 -11.10062 -11.08290 -10.92994 -10.73275 -10.59004 -10.44824 -10.09245 -9.85765 -9.67864 -9.30648 -9.06927 -8.89559 -8.88327 -6.94326 -5.79062 -3.07441 0.79938 1.01283 1.82486 2.53178 3.01749 3.42130 3.42649 3.48131 3.49559 4.15956 4.34858 4.56359 4.57599 4.62437 4.73906 4.84243 5.01583 5.02947 5.11630 5.18425 5.27507 5.35023 5.38213 5.42683 5.55930 5.63175 5.70945 5.78131 5.87766 5.92935 5.93928 5.95918 6.08083 6.20850 6.21366 6.36026 6.44472 6.47255 6.62155 6.74463 6.83934 7.42303 7.68856 8.13096 8.40157 9.51477 10.08527 10.43301 11.43900 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.001794 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.805504 B =15605.677740 C =15957.884616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.514 3.486 17 O -0.533 6.533 18 C -0.074 4.074 19 H 0.107 0.893 20 C -0.143 4.143 21 C -0.060 4.060 22 C -0.071 4.071 23 C -0.111 4.111 24 C -0.034 4.034 25 Cl -0.076 7.076 26 C -0.113 4.113 27 C -0.100 4.100 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -0.241 -28.977 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.299 3.701 17 O -0.409 6.409 18 C -0.095 4.095 19 H 0.125 0.875 20 C -0.200 4.200 21 C -0.061 4.061 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.061 4.061 25 Cl -0.048 7.048 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.987 -1.179 -29.026 29.067 hybrid contribution -0.162 0.225 0.951 0.991 sum 0.825 -0.954 -28.075 28.103 Atomic orbital electron populations 1.21794 0.94679 1.01943 1.01472 1.21551 0.96695 1.00479 0.94199 0.90538 1.20574 0.96614 0.94211 0.85396 1.42335 1.67046 1.27578 1.00563 1.19243 1.28645 1.05499 0.83636 0.91152 1.24736 1.00982 0.97450 0.97867 1.69657 1.43461 1.16712 1.28484 0.86175 0.77566 0.78041 0.84332 1.21727 1.21774 1.20756 1.21424 1.00127 0.95265 0.82883 1.46055 1.57648 1.27891 1.05851 1.20377 0.79688 0.85649 0.84386 1.90739 1.39486 1.24186 1.86527 1.20329 1.02483 0.95839 0.90858 0.87526 1.21821 1.01721 0.93297 1.03173 1.19420 0.93677 0.98382 0.94587 1.20901 0.95224 0.96768 0.96047 1.21029 0.99771 0.98843 0.93351 1.20936 0.94170 1.00664 0.90325 1.98368 1.89139 1.77865 1.39393 1.20971 0.93552 0.99966 0.98728 1.20974 0.99668 0.97913 0.93257 0.92828 0.91133 0.93936 0.96142 0.96020 0.78215 0.93537 0.91359 0.91365 0.76504 0.91069 0.91295 0.91647 0.85242 0.84972 0.84976 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.03 5.33 -59.91 -0.32 -18.35 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.13 1.65 5.06 -4.04 -0.02 1.63 16 15 N -0.72 -7.58 5.18 -60.29 -0.31 -7.89 16 16 C 0.51 5.80 7.03 -10.99 -0.08 5.73 16 17 O -0.53 -8.17 15.13 5.56 0.08 -8.09 16 18 C -0.07 -0.58 2.90 -92.93 -0.27 -0.85 16 19 H 0.11 0.62 7.87 -51.93 -0.41 0.21 16 20 C -0.14 -0.87 8.90 37.16 0.33 -0.54 16 21 C -0.06 -0.54 4.39 -104.62 -0.46 -1.00 16 22 C -0.07 -0.69 7.94 -39.59 -0.31 -1.01 16 23 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 24 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 25 Cl -0.08 -0.67 28.96 -51.86 -1.50 -2.17 16 26 C -0.11 -0.95 9.83 -39.54 -0.39 -1.33 16 27 C -0.10 -0.81 9.67 -39.59 -0.38 -1.19 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 30 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 3.27 7.07 -40.82 -0.29 2.98 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.36 7.56 -51.93 -0.39 -0.04 16 40 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 41 H 0.13 1.24 7.52 -52.49 -0.39 0.84 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.13 0.75 7.94 -52.49 -0.42 0.33 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -32.63 378.74 -9.68 -42.31 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.66 Total: 6.60 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.38 Total: -8.27 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.09 Total: -53.37 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.63 -9.68 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753631092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.649 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds