Wall clock time and date at job start Tue Mar 31 2020 14:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47441 * 103.18133 * 3 2 1 5 5 N 1.46492 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99857 * 270.00033 * 5 4 3 7 7 C 1.50701 * 109.47030 * 269.99952 * 6 5 4 8 8 H 1.08005 * 119.99840 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00184 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99816 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47458 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46897 * 119.99858 * 11 9 7 14 14 H 1.48502 * 109.47145 * 239.99746 * 11 9 7 15 15 C 1.34775 * 120.00398 * 90.00106 * 5 4 3 16 16 O 1.21279 * 120.00195 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99850 * 359.97438 * 15 5 4 18 18 H 1.08994 * 110.43812 * 302.55238 * 17 15 5 19 19 C 1.54098 * 110.48417 * 65.23562 * 17 15 5 20 20 O 1.43751 * 107.29280 * 116.64673 * 19 17 15 21 21 C 1.44376 * 106.97610 * 26.51359 * 20 19 17 22 22 H 1.09001 * 110.75536 * 78.50320 * 21 20 19 23 23 C 1.52997 * 110.62135 * 201.43989 * 21 20 19 24 24 C 1.52996 * 109.46880 * 289.07020 * 23 21 20 25 25 C 1.50706 * 109.47215 * 179.97438 * 24 23 21 26 26 O 1.20825 * 119.99859 * 359.97438 * 25 24 23 27 27 O 1.34224 * 120.00295 * 180.02562 * 25 24 23 28 28 C 1.54806 * 110.48986 * 180.02562 * 17 15 5 29 29 H 1.09007 * 109.46950 * 343.17794 * 3 2 1 30 30 H 1.09004 * 109.46849 * 223.18287 * 3 2 1 31 31 H 1.08999 * 109.47163 * 59.99262 * 4 3 2 32 32 H 1.09004 * 109.47225 * 299.99924 * 4 3 2 33 33 H 1.08995 * 109.47214 * 29.99375 * 6 5 4 34 34 H 1.08997 * 109.47240 * 150.00413 * 6 5 4 35 35 H 0.97002 * 119.99891 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.88077 * 236.07044 * 19 17 15 37 37 H 1.09001 * 109.88229 * 357.22560 * 19 17 15 38 38 H 1.08997 * 109.47186 * 169.07044 * 23 21 20 39 39 H 1.09003 * 109.47116 * 49.06550 * 23 21 20 40 40 H 1.08997 * 109.47192 * 60.00026 * 24 23 21 41 41 H 1.09000 * 109.47459 * 300.00106 * 24 23 21 42 42 H 0.96700 * 117.00196 * 179.97438 * 27 25 24 43 43 H 1.09002 * 110.90743 * 102.24609 * 28 17 15 44 44 H 1.09009 * 110.90857 * 338.64447 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.3298 -1.4044 5 7 4.5829 0.3311 -1.4042 6 6 5.3143 1.5671 -1.1150 7 6 5.5650 2.3147 -2.3993 8 1 5.2149 1.9094 -3.3372 9 6 6.2422 3.5155 -2.3771 10 7 6.6689 4.0087 -1.2350 11 14 6.5535 4.4417 -3.9691 12 1 5.9762 3.6804 -5.1059 13 1 5.9152 5.7806 -3.8957 14 1 8.0160 4.6010 -4.1712 15 6 5.2578 -0.8048 -1.6701 16 8 6.4706 -0.8038 -1.6695 17 6 4.5055 -2.0764 -1.9671 18 1 3.8397 -2.3264 -1.1412 19 6 3.7117 -1.9391 -3.2808 20 8 4.2470 -2.9003 -4.2059 21 6 4.8088 -3.9737 -3.4206 22 1 4.0245 -4.6380 -3.0575 23 6 5.8399 -4.7558 -4.2366 24 6 5.1246 -5.5690 -5.3173 25 6 6.1403 -6.3390 -6.1215 26 8 7.3157 -6.2463 -5.8577 27 8 5.7392 -7.1268 -7.1315 28 6 5.4915 -3.2385 -2.2387 29 1 2.9718 -0.9829 0.2974 30 1 2.9710 0.7502 0.7033 31 1 2.7541 1.3133 -1.7018 32 1 2.7550 -0.4197 -2.1077 33 1 4.7246 2.1892 -0.4418 34 1 6.2669 1.3239 -0.6443 35 1 7.1450 4.8537 -1.2194 36 1 2.6570 -2.1462 -3.0999 37 1 3.8304 -0.9326 -3.6821 38 1 6.3888 -5.4295 -3.5786 39 1 6.5352 -4.0600 -4.7062 40 1 4.5757 -4.8954 -5.9753 41 1 4.4292 -6.2648 -4.8478 42 1 6.4272 -7.6005 -7.6186 43 1 5.5728 -3.8909 -1.3692 44 1 6.4704 -2.8580 -2.5307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:36 Heat of formation + Delta-G solvation = -154.367295 kcal Electronic energy + Delta-G solvation = -27530.245586 eV Core-core repulsion = 23447.605462 eV Total energy + Delta-G solvation = -4082.640124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61239 -40.25239 -38.43159 -36.90921 -36.45230 -35.35748 -33.96180 -33.03086 -32.06269 -30.90124 -29.38140 -27.23787 -25.18438 -24.35846 -23.54975 -22.07016 -21.23803 -20.87599 -18.62507 -18.29989 -17.57921 -17.06704 -16.85469 -16.59599 -16.50281 -16.06030 -15.93705 -15.34157 -14.75554 -14.70023 -14.30733 -14.01342 -13.84869 -13.69531 -13.46515 -13.07177 -12.96698 -12.57148 -12.43888 -12.29538 -12.05194 -11.92651 -11.80759 -11.77656 -11.54514 -11.31506 -11.27407 -11.02384 -10.99914 -10.87409 -10.86219 -10.76304 -10.63929 -10.22737 -9.80253 -9.71201 -9.04388 -8.49980 -7.91695 -6.11615 -4.16242 1.96754 2.67431 2.76188 2.77579 3.15857 3.27266 3.35854 3.39160 3.54856 3.72625 4.10874 4.39310 4.41231 4.47000 4.72709 4.78624 4.86837 4.91592 4.92802 5.07325 5.08933 5.19589 5.23840 5.25048 5.35266 5.43359 5.46565 5.53478 5.67669 5.76044 5.76784 5.90611 5.99577 6.00829 6.23354 6.27213 6.80965 6.88417 7.30491 7.37667 7.52393 7.63014 7.84449 8.13380 8.18367 8.77750 8.92605 9.49726 10.96569 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.003400 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.150932 B = 8234.099766 C =10188.313972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.244 3.756 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.516 3.484 16 O -0.525 6.525 17 C -0.150 4.150 18 H 0.103 0.897 19 C 0.058 3.942 20 O -0.369 6.369 21 C 0.075 3.925 22 H 0.073 0.927 23 C -0.104 4.104 24 C -0.112 4.112 25 C 0.477 3.523 26 O -0.515 6.515 27 O -0.521 6.521 28 C -0.135 4.135 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.409 0.591 43 H 0.083 0.917 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 -19.022 -3.136 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.016 4.016 5 N -0.327 5.327 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.302 3.698 16 O -0.401 6.401 17 C -0.172 4.172 18 H 0.121 0.879 19 C -0.019 4.019 20 O -0.288 6.288 21 C 0.018 3.982 22 H 0.091 0.909 23 C -0.141 4.141 24 C -0.149 4.149 25 C 0.320 3.680 26 O -0.403 6.403 27 O -0.333 6.333 28 C -0.173 4.173 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.267 0.733 43 H 0.101 0.899 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.787 -18.575 -2.987 20.362 hybrid contribution 0.972 0.393 -0.842 1.345 sum -6.815 -18.182 -3.830 19.792 Atomic orbital electron populations 1.81217 1.13009 1.09239 1.08622 1.29095 0.95086 0.92879 0.93153 1.19897 0.81386 1.05775 1.02150 1.21464 0.82357 1.04359 0.93405 1.48192 1.04779 1.11200 1.68517 1.19375 0.92610 0.78632 0.96805 1.21442 1.36774 1.04961 0.93563 0.92286 1.24913 0.95249 0.97334 0.96459 1.69927 1.38297 1.20091 1.24902 0.86467 0.78153 0.79475 0.83499 1.19725 1.20979 1.20863 1.20004 0.87977 0.84194 0.77632 1.90689 1.13714 1.84916 1.50740 1.22792 0.98820 0.95756 0.99802 0.87873 1.23228 0.96170 0.94503 0.88036 1.88898 1.77503 1.32148 1.30290 1.23171 0.94548 0.89652 0.90834 0.90933 1.21488 0.97386 0.98621 0.96608 1.21394 0.96836 0.99005 0.97701 1.23665 0.89548 0.76676 0.78123 1.90749 1.19873 1.62239 1.67408 1.84546 1.45714 1.57772 1.45230 1.23134 1.00794 0.95184 0.98158 0.87620 0.86403 0.88563 0.90446 0.94655 0.93537 0.92702 0.91576 0.88695 0.89453 0.89527 0.86847 0.87691 0.73269 0.89860 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.20 18.54 42.15 0.78 -5.42 16 2 C 0.22 2.44 15.43 -20.76 -0.32 2.12 16 3 C -0.05 -0.49 6.01 -29.52 -0.18 -0.66 16 4 C 0.11 1.38 4.91 -4.05 -0.02 1.36 16 5 N -0.60 -10.39 2.45 -175.07 -0.43 -10.82 16 6 C 0.24 5.64 5.16 -5.19 -0.03 5.61 16 7 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 11 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.52 9.07 6.84 -10.99 -0.08 9.00 16 16 O -0.52 -11.81 15.01 5.56 0.08 -11.73 16 17 C -0.15 -1.82 2.60 -90.25 -0.23 -2.06 16 18 H 0.10 0.92 7.12 -51.93 -0.37 0.55 16 19 C 0.06 0.68 5.48 37.73 0.21 0.89 16 20 O -0.37 -4.67 11.08 -35.23 -0.39 -5.06 16 21 C 0.08 0.75 3.29 -25.66 -0.08 0.67 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 C -0.10 -1.01 4.26 -26.73 -0.11 -1.12 16 24 C -0.11 -0.89 5.76 -27.88 -0.16 -1.05 16 25 C 0.48 4.52 8.33 36.01 0.30 4.82 16 26 O -0.51 -6.69 16.74 -18.75 -0.31 -7.00 16 27 O -0.52 -3.72 13.42 -39.24 -0.53 -4.25 16 28 C -0.13 -1.58 5.96 -24.70 -0.15 -1.72 16 29 H 0.11 0.79 7.21 -51.93 -0.37 0.41 16 30 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.08 0.81 4.43 -51.93 -0.23 0.58 16 33 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 37 H 0.09 1.31 7.09 -51.93 -0.37 0.95 16 38 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.11 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.41 1.31 9.10 45.56 0.41 1.73 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.54 6.79 -51.92 -0.35 1.18 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -35.70 376.27 -6.08 -41.79 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.40 Total: -0.03 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.27 Total: 5.24 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 1.09 Total: -40.78 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.15 Total: -28.04 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.70 -6.08 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.579 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds