Wall clock time and date at job start Tue Mar 31 2020 14:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47530 * 63.65458 * 3 2 1 5 5 N 1.46502 * 109.47392 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00051 * 95.18854 * 5 4 3 7 7 C 1.50695 * 109.47185 * 86.57708 * 6 5 4 8 8 H 1.07996 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99749 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00607 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99780 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47310 * 269.99826 * 11 9 7 13 13 H 1.48504 * 109.47038 * 150.00041 * 11 9 7 14 14 H 1.48504 * 109.47231 * 30.00313 * 11 9 7 15 15 C 1.34772 * 119.99607 * 275.18881 * 5 4 3 16 16 O 1.21280 * 120.00638 * 5.14551 * 15 5 4 17 17 C 1.50701 * 119.99799 * 185.14416 * 15 5 4 18 18 H 1.09002 * 110.75265 * 35.68284 * 17 15 5 19 19 C 1.54380 * 110.84954 * 272.21607 * 17 15 5 20 20 O 1.43236 * 107.59045 * 220.45087 * 19 17 15 21 21 C 1.43643 * 109.96895 * 358.28926 * 20 19 17 22 22 H 1.09005 * 110.30977 * 265.50964 * 21 20 19 23 23 C 1.53004 * 110.31263 * 143.34482 * 21 20 19 24 24 C 1.52995 * 109.47129 * 66.44687 * 23 21 20 25 25 C 1.50705 * 109.46874 * 180.02562 * 24 23 21 26 26 O 1.20825 * 120.00296 * 0.02562 * 25 24 23 27 27 O 1.34232 * 119.99808 * 180.02562 * 25 24 23 28 28 C 1.54942 * 105.14153 * 24.42555 * 21 20 19 29 29 H 1.08997 * 109.47212 * 303.65246 * 3 2 1 30 30 H 1.09004 * 109.46618 * 183.65764 * 3 2 1 31 31 H 1.08997 * 109.47413 * 59.99287 * 4 3 2 32 32 H 1.09008 * 109.46737 * 299.99979 * 4 3 2 33 33 H 1.09000 * 109.47113 * 326.57844 * 6 5 4 34 34 H 1.08999 * 109.47126 * 206.58049 * 6 5 4 35 35 H 0.97001 * 119.99705 * 0.02562 * 10 9 7 36 36 H 1.09003 * 109.83065 * 339.96387 * 19 17 15 37 37 H 1.08997 * 109.83433 * 100.84738 * 19 17 15 38 38 H 1.08995 * 109.47382 * 186.45315 * 23 21 20 39 39 H 1.09003 * 109.46548 * 306.44958 * 23 21 20 40 40 H 1.08998 * 109.47718 * 300.00084 * 24 23 21 41 41 H 1.09003 * 109.47185 * 60.00661 * 24 23 21 42 42 H 0.96698 * 117.00080 * 180.02562 * 27 25 24 43 43 H 1.08998 * 111.13074 * 205.63961 * 28 21 20 44 44 H 1.09003 * 111.12193 * 81.47377 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.6392 -1.2926 5 7 4.5834 -0.6380 -1.2929 6 6 5.3170 -1.8205 -0.8349 7 6 5.4953 -2.7777 -1.9851 8 1 5.1012 -2.5302 -2.9597 9 6 6.1615 -3.9694 -1.7932 10 7 6.6410 -4.2712 -0.6064 11 14 6.3832 -5.1556 -3.2192 12 1 5.2325 -6.0930 -3.2668 13 1 7.6402 -5.9241 -3.0329 14 1 6.4533 -4.3927 -4.4914 15 6 5.2562 0.4510 -1.7144 16 8 4.6526 1.4620 -2.0049 17 6 6.7587 0.4125 -1.8247 18 1 7.0969 -0.5710 -2.1508 19 6 7.4182 0.8039 -0.4849 20 8 8.5460 1.6347 -0.7840 21 6 8.6878 1.7760 -2.2064 22 1 9.3899 1.0366 -2.5919 23 6 9.1584 3.1893 -2.5555 24 6 10.5783 3.3994 -2.0260 25 6 11.0416 4.7918 -2.3694 26 8 10.3108 5.5395 -2.9750 27 8 12.2661 5.2013 -2.0023 28 6 7.2713 1.5234 -2.7814 29 1 2.9716 -0.5686 0.8554 30 1 2.9708 1.0265 0.0656 31 1 2.7548 -0.0700 -2.1481 32 1 2.7555 -1.6651 -1.3581 33 1 4.7564 -2.3100 -0.0385 34 1 6.2943 -1.5186 -0.4586 35 1 6.5256 -3.6554 0.1342 36 1 6.7066 1.3540 0.1308 37 1 7.7468 -0.0924 0.0413 38 1 9.1515 3.3176 -3.6379 39 1 8.4888 3.9183 -2.0990 40 1 10.5853 3.2712 -0.9436 41 1 11.2479 2.6705 -2.4825 42 1 12.5185 6.1027 -2.2446 43 1 7.3228 1.1639 -3.8091 44 1 6.6534 2.4186 -2.7108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:39 Heat of formation + Delta-G solvation = -166.119848 kcal Electronic energy + Delta-G solvation = -27492.007743 eV Core-core repulsion = 23408.857990 eV Total energy + Delta-G solvation = -4083.149753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54868 -40.17727 -38.60587 -36.73677 -36.41715 -35.47667 -33.88010 -33.28529 -32.25974 -30.98436 -29.05397 -26.88864 -25.08114 -24.59662 -23.32248 -22.04397 -21.39207 -20.74140 -18.59875 -18.27045 -17.65348 -17.31845 -17.03494 -16.75125 -16.44490 -15.99966 -15.73058 -15.17180 -14.79846 -14.53184 -14.20252 -13.89928 -13.72540 -13.61680 -13.36397 -13.22762 -13.14146 -12.71676 -12.57038 -12.27296 -12.03193 -11.92909 -11.79033 -11.73223 -11.68407 -11.40182 -11.21496 -11.14919 -10.87384 -10.86592 -10.80995 -10.71684 -10.51789 -10.27967 -9.56753 -9.44419 -9.27309 -8.65193 -7.99514 -6.64944 -4.42978 1.99938 2.74418 2.81574 2.86433 2.98941 3.29806 3.31628 3.44766 3.48655 3.81875 4.23365 4.31354 4.54279 4.61564 4.77819 4.87486 5.00067 5.07853 5.11016 5.20396 5.22313 5.28988 5.32186 5.39059 5.54751 5.55262 5.60178 5.76966 5.79830 5.94011 5.95002 6.06813 6.10519 6.11848 6.27355 6.28547 6.39297 6.63011 7.03281 7.10301 7.62092 7.66226 7.67392 7.86478 8.20837 8.51416 8.62573 9.28175 10.71498 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.003398 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.336263 B = 8238.754790 C =10437.020245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.220 3.780 3 C -0.046 4.046 4 C 0.129 3.871 5 N -0.589 5.589 6 C 0.224 3.776 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.027 3.973 10 N -0.901 5.901 11 Si 1.069 2.931 12 H -0.286 1.286 13 H -0.282 1.282 14 H -0.287 1.287 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.144 4.144 18 H 0.125 0.875 19 C 0.072 3.928 20 O -0.378 6.378 21 C 0.081 3.919 22 H 0.077 0.923 23 C -0.106 4.106 24 C -0.112 4.112 25 C 0.478 3.522 26 O -0.518 6.518 27 O -0.520 6.520 28 C -0.133 4.133 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.269 0.731 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.408 0.592 43 H 0.085 0.915 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 11.333 -0.762 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.098 4.098 3 C -0.087 4.087 4 C 0.003 3.997 5 N -0.319 5.319 6 C 0.103 3.897 7 C -0.661 4.661 8 H 0.076 0.924 9 C -0.179 4.179 10 N -0.536 5.536 11 Si 0.896 3.104 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.213 1.213 15 C 0.318 3.682 16 O -0.441 6.441 17 C -0.165 4.165 18 H 0.143 0.857 19 C -0.005 4.005 20 O -0.298 6.298 21 C 0.024 3.976 22 H 0.095 0.905 23 C -0.143 4.143 24 C -0.149 4.149 25 C 0.321 3.679 26 O -0.406 6.406 27 O -0.332 6.332 28 C -0.171 4.171 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.266 0.734 43 H 0.104 0.896 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.047 10.252 -1.218 12.500 hybrid contribution -0.203 1.715 0.156 1.734 sum 6.844 11.967 -1.061 13.827 Atomic orbital electron populations 1.81183 1.13021 1.09401 1.08872 1.29070 0.95087 0.92694 0.92947 1.19768 0.81474 1.05248 1.02217 1.21123 0.81203 1.02001 0.95334 1.48012 1.05308 1.15683 1.62881 1.19632 0.91741 0.82230 0.96049 1.22316 1.41499 1.05389 0.96936 0.92444 1.25789 0.92972 0.97569 1.01548 1.70823 1.42714 1.39005 1.01031 0.83522 0.77092 0.75583 0.74162 1.21281 1.20781 1.21320 1.20094 0.89246 0.82580 0.76302 1.90624 1.70222 1.31825 1.51443 1.22883 0.93434 1.02977 0.97228 0.85659 1.22967 0.87635 0.94601 0.95287 1.88353 1.48563 1.70564 1.22273 1.22985 0.96893 0.96096 0.81662 0.90494 1.21595 0.94158 0.96503 1.02083 1.21389 0.98298 0.89871 1.05362 1.23733 0.78497 0.90711 0.74961 1.90731 1.55130 1.56413 1.38349 1.84562 1.34894 1.38170 1.75544 1.23210 0.95142 0.99352 0.99378 0.87227 0.87114 0.90250 0.89064 0.95291 0.94868 0.92022 0.91394 0.90201 0.89668 0.90034 0.86752 0.87517 0.73375 0.89625 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.35 18.54 42.15 0.78 -6.57 16 2 C 0.22 3.10 15.43 -20.76 -0.32 2.78 16 3 C -0.05 -0.57 5.99 -29.52 -0.18 -0.75 16 4 C 0.13 1.96 5.29 -4.04 -0.02 1.94 16 5 N -0.59 -10.22 2.47 -175.06 -0.43 -10.65 16 6 C 0.22 4.42 4.06 -5.20 -0.02 4.40 16 7 C -0.62 -14.47 8.93 -34.44 -0.31 -14.78 16 8 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.03 0.67 5.46 -17.82 -0.10 0.57 16 10 N -0.90 -23.38 13.65 55.43 0.76 -22.62 16 11 Si 1.07 22.32 29.90 -169.99 -5.08 17.24 16 12 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.29 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.53 9.21 6.70 -10.99 -0.07 9.14 16 16 O -0.56 -10.66 15.40 5.56 0.09 -10.57 16 17 C -0.14 -2.24 2.36 -89.82 -0.21 -2.45 16 18 H 0.13 2.16 6.83 -51.93 -0.35 1.80 16 19 C 0.07 1.03 6.92 37.88 0.26 1.29 16 20 O -0.38 -5.18 10.69 -35.23 -0.38 -5.56 16 21 C 0.08 0.96 3.43 -25.70 -0.09 0.87 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.11 -1.10 4.25 -26.73 -0.11 -1.22 16 24 C -0.11 -0.98 5.73 -27.88 -0.16 -1.14 16 25 C 0.48 4.71 8.33 36.01 0.30 5.01 16 26 O -0.52 -6.77 16.74 -18.75 -0.31 -7.09 16 27 O -0.52 -3.92 13.42 -39.26 -0.53 -4.44 16 28 C -0.13 -1.80 5.88 -24.48 -0.14 -1.94 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.11 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.08 1.24 7.66 -51.93 -0.40 0.85 16 32 H 0.09 1.41 8.03 -51.92 -0.42 0.99 16 33 H 0.03 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.03 0.66 5.40 -51.93 -0.28 0.38 16 35 H 0.27 6.78 7.22 -40.82 -0.29 6.49 16 36 H 0.07 0.96 7.81 -51.93 -0.41 0.55 16 37 H 0.08 1.14 7.38 -51.93 -0.38 0.76 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.11 1.00 7.91 -51.93 -0.41 0.59 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 1.40 9.10 45.56 0.41 1.82 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.39 7.11 -51.93 -0.37 1.02 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -30.75 377.94 -6.06 -36.80 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.47 Total: 4.06 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.17 Total: 3.72 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 1.11 Total: -39.84 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.13 Total: -27.66 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.08 Total: 17.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.75 -6.06 -36.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.319 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds