Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47411 * 38.78795 * 3 2 1 5 5 N 1.46497 * 109.47097 * 179.97438 * 4 3 2 6 6 C 1.46504 * 119.99537 * 91.72833 * 5 4 3 7 7 C 1.50698 * 109.47356 * 85.30023 * 6 5 4 8 8 H 1.08002 * 119.99970 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00242 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00129 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00183 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47425 * 89.99518 * 11 9 7 13 13 H 1.48501 * 109.46968 * 209.99877 * 11 9 7 14 14 H 1.48503 * 109.46828 * 329.99371 * 11 9 7 15 15 C 1.34771 * 120.00404 * 271.45051 * 5 4 3 16 16 O 1.21275 * 120.00228 * 5.27132 * 15 5 4 17 17 C 1.50707 * 120.00199 * 185.27647 * 15 5 4 18 18 H 1.09000 * 110.45514 * 28.44543 * 17 15 5 19 19 C 1.54476 * 110.50891 * 265.69574 * 17 15 5 20 20 O 1.44422 * 104.80342 * 217.37281 * 19 17 15 21 21 C 1.44429 * 105.27341 * 40.51168 * 20 19 17 22 22 H 1.08997 * 110.37351 * 78.32082 * 21 20 19 23 23 C 1.53005 * 110.37459 * 200.65458 * 21 20 19 24 24 C 1.53000 * 109.47263 * 290.38584 * 23 21 20 25 25 C 1.50698 * 109.46771 * 179.97438 * 24 23 21 26 26 O 1.20819 * 120.00352 * 359.97438 * 25 24 23 27 27 O 1.34232 * 119.99379 * 179.97438 * 25 24 23 28 28 C 1.54480 * 104.80152 * 319.48894 * 21 20 19 29 29 H 1.08996 * 109.47558 * 278.78613 * 3 2 1 30 30 H 1.09000 * 109.47215 * 158.78888 * 3 2 1 31 31 H 1.09007 * 109.46752 * 60.00095 * 4 3 2 32 32 H 1.08996 * 109.47451 * 300.00019 * 4 3 2 33 33 H 1.09003 * 109.46948 * 205.29897 * 6 5 4 34 34 H 1.08997 * 109.47504 * 325.29478 * 6 5 4 35 35 H 0.96999 * 120.00750 * 180.02562 * 10 9 7 36 36 H 1.08994 * 110.37698 * 336.20437 * 19 17 15 37 37 H 1.09004 * 110.37225 * 98.54282 * 19 17 15 38 38 H 1.09004 * 109.46732 * 50.37958 * 23 21 20 39 39 H 1.08998 * 109.46907 * 170.37656 * 23 21 20 40 40 H 1.09004 * 109.46735 * 299.99372 * 24 23 21 41 41 H 1.08998 * 109.47217 * 59.99422 * 24 23 21 42 42 H 0.96700 * 116.99786 * 179.97438 * 27 25 24 43 43 H 1.09003 * 110.50948 * 265.32762 * 28 21 20 44 44 H 1.09002 * 110.50805 * 142.62586 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1235 -0.9036 5 7 4.5836 -1.1224 -0.9041 6 6 5.3169 -1.9460 0.0604 7 6 5.4681 -3.3429 -0.4843 8 1 5.0586 -3.5924 -1.4520 9 6 6.1284 -4.3027 0.2531 10 7 6.6267 -3.9991 1.4317 11 14 6.3165 -6.0341 -0.4225 12 1 7.5746 -6.1259 -1.2059 13 1 6.3621 -7.0022 0.7026 14 1 5.1619 -6.3506 -1.3013 15 6 5.2567 -0.3681 -1.7953 16 8 4.6535 0.3821 -2.5330 17 6 6.7590 -0.4568 -1.8753 18 1 7.0991 -1.4455 -1.5673 19 6 7.4130 0.6392 -1.0052 20 8 8.5704 1.0652 -1.7566 21 6 8.1346 1.1115 -3.1328 22 1 7.5570 2.0171 -3.3177 23 6 9.3381 1.0444 -4.0752 24 6 10.1366 2.3458 -3.9763 25 6 11.3222 2.2793 -4.9041 26 8 11.5097 1.2923 -5.5751 27 8 12.1700 3.3169 -4.9849 28 6 7.2446 -0.1390 -3.3072 29 1 2.9715 -0.1561 1.0155 30 1 2.9709 0.9589 -0.3718 31 1 2.7552 -0.9666 -1.9193 32 1 2.7558 -2.0817 -0.5319 33 1 6.3029 -1.5140 0.2315 34 1 4.7672 -1.9803 1.0010 35 1 7.0916 -4.6741 1.9504 36 1 6.7248 1.4725 -0.8637 37 1 7.7160 0.2286 -0.0420 38 1 9.9743 0.2055 -3.7928 39 1 8.9905 0.9082 -5.0993 40 1 9.5004 3.1847 -4.2587 41 1 10.4841 2.4819 -2.9523 42 1 12.9161 3.2277 -5.5936 43 1 7.8269 -0.9696 -3.7063 44 1 6.3981 0.0823 -3.9573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = -162.620467 kcal Electronic energy + Delta-G solvation = -27434.882116 eV Core-core repulsion = 23351.884108 eV Total energy + Delta-G solvation = -4082.998008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52012 -40.12155 -38.47781 -36.67759 -36.39972 -35.31264 -33.83763 -33.03184 -32.14681 -30.92348 -28.95065 -27.30779 -25.01042 -24.50521 -23.28168 -22.11431 -21.14982 -20.77173 -18.43588 -18.28249 -17.54751 -17.02299 -16.77767 -16.60790 -16.45666 -15.87436 -15.41356 -15.06893 -15.03189 -14.65156 -14.37182 -14.16925 -13.64318 -13.43661 -13.37311 -13.04647 -12.81073 -12.59161 -12.40171 -12.21625 -12.01956 -11.91927 -11.75728 -11.64606 -11.47428 -11.33856 -11.15636 -11.06969 -10.88476 -10.86581 -10.72133 -10.64055 -10.48522 -10.20036 -9.89621 -9.65797 -9.24948 -8.67113 -8.01092 -6.30017 -4.38204 2.01657 2.80588 2.83406 2.91776 3.07365 3.17428 3.25746 3.28683 3.57052 3.98144 4.24254 4.32924 4.57884 4.73353 4.87202 4.92967 5.02942 5.07518 5.16164 5.25379 5.31281 5.33836 5.38575 5.42478 5.62228 5.62959 5.65607 5.83231 5.91075 5.97345 6.03854 6.12737 6.20100 6.23081 6.30492 6.37196 6.53707 6.91906 7.00432 7.30047 7.63614 7.67672 7.67737 7.89810 8.08776 8.62534 8.77545 9.31174 10.76629 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.003387 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.499464 B = 8264.744653 C =10452.240792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.127 3.873 5 N -0.592 5.592 6 C 0.234 3.766 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.527 3.473 16 O -0.567 6.567 17 C -0.145 4.145 18 H 0.126 0.874 19 C 0.067 3.933 20 O -0.370 6.370 21 C 0.077 3.923 22 H 0.073 0.927 23 C -0.103 4.103 24 C -0.112 4.112 25 C 0.478 3.522 26 O -0.517 6.517 27 O -0.520 6.520 28 C -0.134 4.134 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.267 0.733 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.408 0.592 43 H 0.080 0.920 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 11.920 -6.287 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.322 5.322 6 C 0.114 3.886 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.315 3.685 16 O -0.448 6.448 17 C -0.166 4.166 18 H 0.144 0.856 19 C -0.011 4.011 20 O -0.289 6.289 21 C 0.019 3.981 22 H 0.091 0.909 23 C -0.140 4.140 24 C -0.150 4.150 25 C 0.321 3.679 26 O -0.405 6.405 27 O -0.332 6.332 28 C -0.172 4.172 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.266 0.734 43 H 0.099 0.901 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.902 12.022 -6.306 14.433 hybrid contribution 0.930 -1.314 -0.590 1.714 sum 5.832 10.708 -6.896 14.008 Atomic orbital electron populations 1.81179 1.13088 1.09151 1.09353 1.29118 0.95136 0.92777 0.92673 1.19777 0.81324 1.03320 1.04246 1.21122 0.81503 0.97523 0.99704 1.48223 1.05296 1.43903 1.34754 1.19564 0.92280 0.89481 0.87256 1.21460 1.37359 0.94858 1.04657 0.91947 1.24917 0.94924 0.99061 0.94647 1.69895 1.36437 1.34848 1.11373 0.86532 0.78781 0.83738 0.78693 1.20374 1.21049 1.19784 1.20251 0.89477 0.79347 0.79453 1.90601 1.70308 1.39896 1.43995 1.22714 0.93007 1.03915 0.96956 0.85582 1.23257 0.87274 0.94896 0.95643 1.89093 1.33417 1.88794 1.17606 1.22998 0.94058 0.98238 0.82811 0.90892 1.21532 0.96053 0.96631 0.99824 1.21407 0.92515 1.01381 0.99677 1.23707 0.83379 0.79619 0.81206 1.90734 1.73644 1.32767 1.43340 1.84557 1.39519 1.45043 1.64113 1.22905 1.00154 0.97834 0.96328 0.87019 0.87286 0.90264 0.89109 0.93834 0.94255 0.92350 0.92181 0.87914 0.89760 0.89633 0.87627 0.86790 0.73360 0.90133 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.35 18.54 42.15 0.78 -6.57 16 2 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 3 C -0.05 -0.55 6.02 -29.52 -0.18 -0.73 16 4 C 0.13 1.91 5.33 -4.04 -0.02 1.89 16 5 N -0.59 -10.19 2.46 -175.06 -0.43 -10.62 16 6 C 0.23 4.68 4.75 -5.19 -0.02 4.65 16 7 C -0.54 -12.67 8.99 -34.44 -0.31 -12.98 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -22.57 13.29 55.43 0.74 -21.83 16 11 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 C 0.53 9.02 6.64 -10.98 -0.07 8.95 16 16 O -0.57 -10.49 15.41 5.56 0.09 -10.41 16 17 C -0.14 -2.27 2.53 -90.21 -0.23 -2.50 16 18 H 0.13 2.24 6.44 -51.93 -0.33 1.91 16 19 C 0.07 0.93 6.93 37.93 0.26 1.20 16 20 O -0.37 -5.10 11.13 -35.23 -0.39 -5.50 16 21 C 0.08 0.92 3.25 -25.95 -0.08 0.84 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.10 -1.09 4.13 -26.73 -0.11 -1.20 16 24 C -0.11 -0.99 5.75 -27.88 -0.16 -1.15 16 25 C 0.48 4.74 8.33 36.00 0.30 5.04 16 26 O -0.52 -6.83 16.74 -18.74 -0.31 -7.15 16 27 O -0.52 -3.92 13.42 -39.26 -0.53 -4.45 16 28 C -0.13 -1.86 6.14 -25.17 -0.15 -2.01 16 29 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.22 7.55 -51.92 -0.39 0.83 16 32 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 33 H 0.04 0.89 5.91 -51.93 -0.31 0.58 16 34 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 36 H 0.06 0.80 7.86 -51.93 -0.41 0.39 16 37 H 0.10 1.42 7.76 -51.93 -0.40 1.02 16 38 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 0.98 8.01 -51.93 -0.42 0.57 16 42 H 0.41 1.42 9.10 45.56 0.41 1.84 16 43 H 0.08 1.07 7.87 -51.93 -0.41 0.67 16 44 H 0.09 1.33 6.90 -51.93 -0.36 0.97 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -30.16 379.97 -6.08 -36.24 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.53 Total: 3.86 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.20 Total: 6.31 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 1.09 Total: -39.02 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.15 Total: -27.50 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.16 -6.08 -36.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.379 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds