Wall clock time and date at job start Tue Mar 31 2020 14:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53010 * 109.47074 * 359.73873 * 3 2 1 5 5 N 1.46503 * 109.46964 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99203 * 264.96873 * 5 4 3 7 7 C 1.50704 * 109.46948 * 90.00498 * 6 5 4 8 8 H 1.07999 * 120.00119 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99777 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99586 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99851 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47563 * 90.00020 * 11 9 7 13 13 H 1.48507 * 109.47070 * 209.99658 * 11 9 7 14 14 H 1.48497 * 109.47428 * 329.99658 * 11 9 7 15 15 C 1.34768 * 120.00223 * 84.96923 * 5 4 3 16 16 O 1.21286 * 120.00026 * 185.12427 * 15 5 4 17 17 C 1.50696 * 120.00085 * 5.12821 * 15 5 4 18 18 H 1.08997 * 110.45724 * 332.17869 * 17 15 5 19 19 C 1.54482 * 110.51356 * 94.78576 * 17 15 5 20 20 O 1.44421 * 104.80522 * 142.62244 * 19 17 15 21 21 C 1.44425 * 105.27620 * 319.48509 * 20 19 17 22 22 H 1.08997 * 110.37796 * 281.57052 * 21 20 19 23 23 C 1.53001 * 110.37194 * 159.33902 * 21 20 19 24 24 C 1.53005 * 109.46712 * 66.46139 * 23 21 20 25 25 C 1.50701 * 109.47194 * 179.97438 * 24 23 21 26 26 O 1.20826 * 119.99641 * 359.97438 * 25 24 23 27 27 O 1.34227 * 120.00267 * 179.97438 * 25 24 23 28 28 C 1.54511 * 110.51082 * 209.57364 * 17 15 5 29 29 H 1.08995 * 109.47339 * 239.73753 * 3 2 1 30 30 H 1.08996 * 109.47180 * 119.73599 * 3 2 1 31 31 H 1.08995 * 109.47136 * 59.99756 * 4 3 2 32 32 H 1.09001 * 109.46543 * 299.99586 * 4 3 2 33 33 H 1.09006 * 109.46535 * 209.99811 * 6 5 4 34 34 H 1.08993 * 109.47552 * 330.00032 * 6 5 4 35 35 H 0.97009 * 119.99839 * 179.97438 * 10 9 7 36 36 H 1.09001 * 110.36958 * 261.45375 * 19 17 15 37 37 H 1.09002 * 110.37035 * 23.67807 * 19 17 15 38 38 H 1.09001 * 109.47199 * 186.45436 * 23 21 20 39 39 H 1.08992 * 109.47567 * 306.46188 * 23 21 20 40 40 H 1.09001 * 109.46715 * 299.99594 * 24 23 21 41 41 H 1.08994 * 109.47543 * 59.99544 * 24 23 21 42 42 H 0.96697 * 117.00136 * 180.02562 * 27 25 24 43 43 H 1.08999 * 110.51111 * 0.02562 * 28 17 15 44 44 H 1.09000 * 110.51367 * 122.70836 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.4417 0.0066 5 7 4.5836 -1.4410 0.0072 6 6 5.3166 -1.5575 -1.2560 7 6 5.5674 -0.1826 -1.8198 8 1 5.2156 0.6905 -1.2905 9 6 6.2459 -0.0395 -3.0116 10 7 6.4643 1.1602 -3.5039 11 14 6.8537 -1.5499 -3.9274 12 1 5.8028 -2.0147 -4.8680 13 1 8.0820 -1.2065 -4.6882 14 1 7.1596 -2.6291 -2.9544 15 6 5.2570 -1.3332 1.1696 16 8 6.4662 -1.2391 1.1635 17 6 4.5075 -1.3298 2.4770 18 1 3.5006 -0.9365 2.3378 19 6 4.4549 -2.7534 3.0745 20 8 4.5916 -2.5609 4.4993 21 6 5.5909 -1.5291 4.6497 22 1 6.5891 -1.9443 4.5109 23 6 5.4751 -0.8721 6.0266 24 6 5.8390 -1.8899 7.1095 25 6 5.7256 -1.2427 8.4657 26 8 5.3887 -0.0859 8.5567 27 8 5.9988 -1.9512 9.5725 28 6 5.2702 -0.5027 3.5361 29 1 2.9711 0.5187 0.8876 30 1 2.9710 0.5105 -0.8923 31 1 2.7555 -1.9597 -0.8810 32 1 2.7555 -1.9515 0.8990 33 1 6.2692 -2.0567 -1.0785 34 1 4.7280 -2.1393 -1.9652 35 1 6.9420 1.2609 -4.3421 36 1 3.4997 -3.2259 2.8454 37 1 5.2776 -3.3567 2.6907 38 1 6.1562 -0.0229 6.0825 39 1 4.4523 -0.5282 6.1803 40 1 5.1579 -2.7390 7.0536 41 1 6.8618 -2.2338 6.9559 42 1 5.9116 -1.4932 10.4196 43 1 6.1891 -0.0959 3.1138 44 1 4.6395 0.2980 3.9222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:45 Heat of formation + Delta-G solvation = -152.241112 kcal Electronic energy + Delta-G solvation = -27456.365677 eV Core-core repulsion = 23373.817751 eV Total energy + Delta-G solvation = -4082.547926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65620 -40.28641 -38.56602 -36.82317 -36.49893 -35.38967 -33.98554 -32.95784 -32.10529 -30.97340 -29.38936 -27.91420 -25.14290 -24.32283 -23.49403 -22.06157 -21.15776 -20.90353 -18.65206 -18.38435 -17.73237 -17.14969 -16.93721 -16.74403 -16.61925 -16.13027 -15.65005 -15.19985 -14.99055 -14.64581 -14.53744 -13.90160 -13.83623 -13.61347 -13.51433 -13.17213 -12.91878 -12.68926 -12.56597 -12.42706 -12.10283 -12.04238 -11.86487 -11.80000 -11.72964 -11.51033 -11.31781 -11.18266 -11.05970 -10.87777 -10.78350 -10.73346 -10.57298 -10.22011 -9.91124 -9.63076 -9.21061 -8.68238 -8.01491 -6.17945 -4.17798 1.91798 2.72289 2.75575 2.89810 3.06002 3.20391 3.28824 3.31678 3.45998 3.73280 4.19843 4.31437 4.41954 4.47673 4.66451 4.76301 4.76692 4.89184 4.96101 5.13393 5.14313 5.17903 5.20560 5.21420 5.36131 5.41766 5.43140 5.56603 5.60398 5.76368 5.81355 5.86388 5.98758 6.03951 6.14213 6.20067 6.50179 6.66163 6.81707 7.10467 7.49115 7.58202 7.64865 7.97659 8.33842 8.70933 8.84122 9.41859 10.94772 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002907 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.321786 B = 9628.771447 C =10770.560968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.218 3.782 3 C -0.055 4.055 4 C 0.122 3.878 5 N -0.591 5.591 6 C 0.214 3.786 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.872 3.128 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.518 3.482 16 O -0.524 6.524 17 C -0.151 4.151 18 H 0.102 0.898 19 C 0.065 3.935 20 O -0.370 6.370 21 C 0.076 3.924 22 H 0.078 0.922 23 C -0.102 4.102 24 C -0.113 4.113 25 C 0.478 3.522 26 O -0.517 6.517 27 O -0.520 6.520 28 C -0.135 4.135 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.409 0.591 43 H 0.099 0.901 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -8.194 18.867 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.099 4.099 3 C -0.096 4.096 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.094 3.906 7 C -0.570 4.570 8 H 0.096 0.904 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.304 3.696 16 O -0.400 6.400 17 C -0.173 4.173 18 H 0.120 0.880 19 C -0.012 4.012 20 O -0.289 6.289 21 C 0.019 3.981 22 H 0.096 0.904 23 C -0.140 4.140 24 C -0.150 4.150 25 C 0.321 3.679 26 O -0.405 6.405 27 O -0.332 6.332 28 C -0.173 4.173 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.267 0.733 43 H 0.117 0.883 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.096 -8.050 18.494 20.582 hybrid contribution 0.754 -0.082 -0.365 0.841 sum -3.342 -8.132 18.129 20.149 Atomic orbital electron populations 1.81193 1.13074 1.08736 1.09723 1.29209 0.95167 0.93012 0.92557 1.20002 0.80966 1.01034 1.07586 1.21321 0.81534 0.94087 1.03480 1.47917 1.05055 1.71380 1.07882 1.19779 0.92498 0.98465 0.79878 1.21290 1.37424 0.91826 1.06471 0.90361 1.24848 0.95173 0.95735 0.97107 1.69880 1.41135 1.21708 1.20446 0.86908 0.79003 0.83819 0.80358 1.20112 1.20998 1.18856 1.20041 0.87920 0.77069 0.84598 1.90697 1.14073 1.48421 1.86812 1.22821 1.01398 0.98413 0.94683 0.87989 1.23235 1.02673 0.94403 0.80939 1.89083 1.59864 1.57531 1.22465 1.23103 0.92791 0.87877 0.94374 0.90437 1.21532 1.04257 0.97222 0.90974 1.21389 1.05810 1.00734 0.87077 1.23683 0.72344 0.84804 0.87069 1.90737 1.43597 1.18529 1.87668 1.84552 1.82061 1.48484 1.18085 1.22991 1.02258 0.97990 0.94084 0.87632 0.84879 0.89134 0.90717 0.93996 0.95360 0.92470 0.88488 0.91469 0.89381 0.89940 0.86835 0.87500 0.73273 0.88264 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.89 18.54 42.15 0.78 -6.11 16 2 C 0.22 2.82 15.43 -20.76 -0.32 2.50 16 3 C -0.05 -0.65 5.79 -29.52 -0.17 -0.82 16 4 C 0.12 1.47 5.02 -4.03 -0.02 1.45 16 5 N -0.59 -9.77 2.47 -175.05 -0.43 -10.20 16 6 C 0.21 4.49 4.23 -5.19 -0.02 4.47 16 7 C -0.53 -13.45 9.74 -34.44 -0.34 -13.79 16 8 H 0.08 2.13 7.66 -52.49 -0.40 1.73 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 11 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 15 C 0.52 8.56 6.60 -10.99 -0.07 8.49 16 16 O -0.52 -11.02 15.40 5.55 0.09 -10.93 16 17 C -0.15 -1.80 2.63 -90.20 -0.24 -2.03 16 18 H 0.10 1.01 5.50 -51.93 -0.29 0.72 16 19 C 0.06 0.69 7.17 37.94 0.27 0.96 16 20 O -0.37 -4.06 11.00 -35.23 -0.39 -4.44 16 21 C 0.08 0.77 3.29 -25.78 -0.08 0.69 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.10 -0.91 4.15 -26.73 -0.11 -1.02 16 24 C -0.11 -0.85 5.73 -27.88 -0.16 -1.01 16 25 C 0.48 4.21 8.33 36.01 0.30 4.51 16 26 O -0.52 -6.23 16.74 -18.75 -0.31 -6.54 16 27 O -0.52 -3.45 13.42 -39.25 -0.53 -3.98 16 28 C -0.14 -1.55 6.16 -24.99 -0.15 -1.71 16 29 H 0.11 1.11 7.34 -51.93 -0.38 0.73 16 30 H 0.13 1.89 7.53 -51.93 -0.39 1.50 16 31 H 0.09 1.04 7.84 -51.93 -0.41 0.63 16 32 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 33 H 0.04 0.97 6.56 -51.93 -0.34 0.63 16 34 H 0.03 0.55 7.29 -51.93 -0.38 0.18 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 38 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.11 0.81 7.91 -51.93 -0.41 0.40 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.41 1.08 9.10 45.56 0.41 1.50 16 43 H 0.10 1.35 6.92 -51.93 -0.36 0.99 16 44 H 0.08 0.82 7.88 -51.93 -0.41 0.41 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -34.70 374.33 -5.64 -40.33 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.37 Total: 1.32 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.21 Total: 4.59 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 1.12 Total: -41.32 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.14 Total: -25.90 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.70 -5.64 -40.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.907 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds