Wall clock time and date at job start Tue Mar 31 2020 14:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00152 * 2 1 4 4 H 1.48504 * 109.46895 * 270.00384 * 3 2 1 5 5 H 1.48501 * 109.46825 * 30.00170 * 3 2 1 6 6 H 1.48495 * 109.47317 * 150.00220 * 3 2 1 7 7 C 1.37875 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00243 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47244 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46873 * 180.02562 * 10 9 7 12 12 C 1.46897 * 110.99910 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47170 * 34.99693 * 12 11 10 14 14 C 1.50704 * 109.47367 * 155.00101 * 12 11 10 15 15 O 1.21284 * 119.99428 * 359.72192 * 14 12 11 16 16 N 1.34772 * 120.00241 * 180.02562 * 14 12 11 17 17 C 1.39925 * 120.00161 * 175.37917 * 16 14 12 18 18 C 1.38875 * 120.07105 * 214.79902 * 17 16 14 19 19 C 1.38110 * 119.92480 * 179.79044 * 18 17 16 20 20 C 1.38280 * 120.07122 * 0.48923 * 19 18 17 21 21 C 1.38275 * 120.14533 * 359.74387 * 20 19 18 22 22 C 1.38116 * 120.06629 * 0.02562 * 21 20 19 23 23 C 1.50705 * 109.47332 * 274.99961 * 12 11 10 24 24 C 1.38237 * 119.99576 * 319.72881 * 23 12 11 25 25 C 1.38235 * 119.99717 * 179.80866 * 24 23 12 26 26 C 1.38236 * 119.99890 * 0.39940 * 25 24 23 27 27 C 1.38225 * 120.00097 * 359.85136 * 26 25 24 28 28 C 1.38227 * 120.00315 * 139.99761 * 23 12 11 29 29 H 0.96999 * 119.99882 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46857 * 60.00280 * 9 7 2 31 31 H 1.08994 * 109.47452 * 300.00439 * 9 7 2 32 32 H 1.08998 * 109.47017 * 60.00314 * 10 9 7 33 33 H 1.08999 * 109.47095 * 300.00071 * 10 9 7 34 34 H 1.00903 * 111.00236 * 56.04753 * 11 10 9 35 35 H 0.97007 * 120.00049 * 355.38377 * 16 14 12 36 36 H 1.08002 * 120.03474 * 0.02663 * 18 17 16 37 37 H 1.08001 * 119.95990 * 180.23381 * 19 18 17 38 38 H 1.08007 * 119.92750 * 179.72114 * 20 19 18 39 39 H 1.07995 * 119.96727 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.03490 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00049 * 359.97438 * 24 23 12 42 42 H 1.08005 * 119.99929 * 180.22567 * 25 24 23 43 43 H 1.08002 * 119.99894 * 179.83785 * 26 25 24 44 44 H 1.08001 * 119.99989 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99868 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 7 5.4905 -2.6366 -0.0022 12 6 6.0170 -4.0080 -0.0027 13 1 5.3613 -4.6486 -0.5924 14 6 7.3993 -4.0153 -0.6031 15 8 7.8947 -2.9807 -0.9969 16 7 8.0823 -5.1723 -0.7081 17 6 9.3241 -5.1958 -1.3524 18 6 9.7015 -6.3063 -2.0959 19 6 10.9261 -6.3244 -2.7342 20 6 11.7804 -5.2425 -2.6252 21 6 11.4097 -4.1372 -1.8817 22 6 10.1844 -4.1109 -1.2448 23 6 6.0814 -4.5219 1.4125 24 6 6.4972 -3.6869 2.4327 25 6 6.5525 -4.1571 3.7315 26 6 6.1999 -5.4647 4.0087 27 6 5.7891 -6.3011 2.9878 28 6 5.7300 -5.8297 1.6896 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8910 32 1 3.6579 -3.1498 -0.8925 33 1 3.6586 -3.1510 0.8875 34 1 5.8521 -2.1111 0.7796 35 1 7.7130 -5.9890 -0.3370 36 1 9.0364 -7.1533 -2.1781 37 1 11.2186 -7.1863 -3.3157 38 1 12.7394 -5.2610 -3.1216 39 1 12.0789 -3.2937 -1.7988 40 1 9.8955 -3.2475 -0.6639 41 1 6.7763 -2.6665 2.2155 42 1 6.8739 -3.5037 4.5291 43 1 6.2456 -5.8328 5.0231 44 1 5.5140 -7.3227 3.2044 45 1 5.4089 -6.4832 0.8919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342545708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:24 Heat of formation + Delta-G solvation = 23.778473 kcal Electronic energy + Delta-G solvation = -26346.715643 eV Core-core repulsion = 22714.942514 eV Total energy + Delta-G solvation = -3631.773129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86217 -39.52463 -38.32838 -36.08511 -34.81482 -33.23956 -31.70955 -31.07228 -31.05713 -29.74173 -29.36235 -26.48486 -23.87416 -23.16516 -22.73995 -22.55992 -21.63392 -20.48356 -20.06373 -18.02325 -17.50060 -16.97142 -16.69820 -16.37579 -15.83815 -15.22337 -15.05968 -14.90965 -14.49211 -14.19882 -14.17601 -13.92209 -13.57924 -13.49761 -13.37623 -13.17451 -12.95120 -12.72468 -12.57414 -12.16974 -11.85390 -11.48762 -11.41966 -11.39194 -11.12479 -11.02452 -10.48662 -10.32247 -9.94876 -9.82177 -9.77198 -9.23652 -9.09355 -9.08659 -8.82542 -8.52851 -8.27890 -8.09647 -6.03960 -4.02480 1.06533 1.17637 1.23562 1.26018 2.57510 2.84718 3.35166 3.41766 3.47222 3.61232 3.67663 4.42649 4.45443 4.47659 4.68776 4.73797 4.79115 4.80475 4.92850 4.95669 5.00404 5.15293 5.24619 5.31001 5.32275 5.39955 5.44356 5.46530 5.76259 5.84937 5.85803 6.09126 6.16396 6.18748 6.19608 6.27337 6.32746 6.35488 6.36087 6.41497 6.72308 6.80692 6.89558 6.99259 7.24683 7.35268 7.50892 7.64882 7.83705 8.10311 8.52437 8.99442 9.58495 11.09222 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003260 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.984360 B = 8586.143761 C =10164.699014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.009 4.009 10 C 0.075 3.925 11 N -0.664 5.664 12 C 0.114 3.886 13 H 0.114 0.886 14 C 0.524 3.476 15 O -0.491 6.491 16 N -0.678 5.678 17 C 0.153 3.847 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.141 4.141 21 C -0.102 4.102 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.113 4.113 29 H 0.263 0.737 30 H 0.014 0.986 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.344 0.656 35 H 0.408 0.592 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.811 -16.907 2.786 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.052 4.052 11 N -0.296 5.296 12 C -0.001 4.001 13 H 0.132 0.868 14 C 0.310 3.690 15 O -0.362 6.362 16 N -0.324 5.324 17 C 0.058 3.942 18 C -0.170 4.170 19 C -0.122 4.122 20 C -0.160 4.160 21 C -0.121 4.121 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.131 4.131 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.165 0.835 35 H 0.244 0.756 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.955 -15.875 1.818 27.154 hybrid contribution -0.191 0.172 1.090 1.120 sum 21.764 -15.703 2.908 26.994 Atomic orbital electron populations 1.69913 1.06312 1.26937 1.51097 1.24989 0.94723 0.99201 0.94422 0.86749 0.80289 0.83409 0.78681 1.20170 1.21511 1.18934 1.21025 0.89206 0.94526 1.51133 0.91083 1.19537 0.96724 0.91495 0.96948 1.22051 0.82758 1.00649 0.99785 1.60448 1.10316 1.08433 1.50359 1.20434 0.93406 0.94213 0.92052 0.86840 1.20761 0.87031 0.82923 0.78245 1.90700 1.68502 1.31572 1.45405 1.43586 1.18640 1.12435 1.57768 1.17799 0.85398 0.95871 0.95093 1.20911 0.98310 0.98657 0.99134 1.20911 0.93675 0.98546 0.99039 1.21119 1.00047 0.94120 1.00690 1.21085 0.96018 0.98087 0.96886 1.21346 0.92778 0.99067 1.01025 1.20466 1.00667 0.94793 0.95698 1.21020 0.98887 0.99819 0.92795 1.21141 0.99569 0.95904 0.96398 1.21190 0.99176 0.94041 0.99244 1.21128 0.99660 0.99859 0.92816 1.21050 1.00074 0.94800 0.97209 0.92718 0.96786 0.95866 0.91479 0.95413 0.83518 0.75593 0.85826 0.85856 0.86166 0.85834 0.84329 0.85738 0.85823 0.86040 0.85885 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 10 C 0.08 1.50 5.42 -3.82 -0.02 1.48 16 11 N -0.66 -11.47 5.72 -109.19 -0.62 -12.09 16 12 C 0.11 1.54 2.64 -70.01 -0.19 1.36 16 13 H 0.11 1.41 7.66 -51.93 -0.40 1.02 16 14 C 0.52 7.35 7.05 -10.99 -0.08 7.28 16 15 O -0.49 -8.67 13.88 5.55 0.08 -8.59 16 16 N -0.68 -7.43 5.26 -9.86 -0.05 -7.48 16 17 C 0.15 1.78 6.30 -83.69 -0.53 1.25 16 18 C -0.15 -1.42 9.97 -39.39 -0.39 -1.82 16 19 C -0.10 -0.90 10.04 -39.61 -0.40 -1.29 16 20 C -0.14 -1.27 10.04 -39.55 -0.40 -1.67 16 21 C -0.10 -1.07 10.04 -39.61 -0.40 -1.46 16 22 C -0.12 -1.53 8.70 -39.39 -0.34 -1.87 16 23 C -0.11 -1.37 4.45 -104.62 -0.47 -1.83 16 24 C -0.11 -1.32 9.11 -39.58 -0.36 -1.68 16 25 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 27 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 28 C -0.11 -1.13 9.41 -39.59 -0.37 -1.50 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 30 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 31 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 33 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 34 H 0.34 5.81 6.36 -39.29 -0.25 5.56 16 35 H 0.41 3.31 8.39 -40.82 -0.34 2.97 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 1.96 6.23 -52.49 -0.33 1.64 16 41 H 0.12 1.57 6.53 -52.49 -0.34 1.23 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -34.33 376.50 -10.73 -45.06 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.23 Total: 7.28 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -5.68 Total: -20.11 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.10 Total: -46.88 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.33 -10.73 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342545708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.838 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds