Wall clock time and date at job start Tue Mar 31 2020 14:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00152 * 2 1 4 4 H 1.48504 * 109.46895 * 270.00384 * 3 2 1 5 5 H 1.48501 * 109.46825 * 30.00170 * 3 2 1 6 6 H 1.48495 * 109.47317 * 150.00220 * 3 2 1 7 7 C 1.37875 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00243 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47244 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46873 * 180.02562 * 10 9 7 12 12 C 1.46897 * 110.99910 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47170 * 34.99693 * 12 11 10 14 14 C 1.50704 * 109.47367 * 155.00101 * 12 11 10 15 15 O 1.21284 * 119.99428 * 359.72192 * 14 12 11 16 16 N 1.34772 * 120.00241 * 180.02562 * 14 12 11 17 17 C 1.39925 * 120.00161 * 175.37917 * 16 14 12 18 18 C 1.38875 * 120.07105 * 214.79902 * 17 16 14 19 19 C 1.38110 * 119.92480 * 179.79044 * 18 17 16 20 20 C 1.38280 * 120.07122 * 0.48923 * 19 18 17 21 21 C 1.38275 * 120.14533 * 359.74387 * 20 19 18 22 22 C 1.38116 * 120.06629 * 0.02562 * 21 20 19 23 23 C 1.50705 * 109.47332 * 274.99961 * 12 11 10 24 24 C 1.38237 * 119.99576 * 319.72881 * 23 12 11 25 25 C 1.38235 * 119.99717 * 179.80866 * 24 23 12 26 26 C 1.38236 * 119.99890 * 0.39940 * 25 24 23 27 27 C 1.38225 * 120.00097 * 359.85136 * 26 25 24 28 28 C 1.38227 * 120.00315 * 139.99761 * 23 12 11 29 29 H 0.96999 * 119.99882 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46857 * 60.00280 * 9 7 2 31 31 H 1.08994 * 109.47452 * 300.00439 * 9 7 2 32 32 H 1.08998 * 109.47017 * 60.00314 * 10 9 7 33 33 H 1.08999 * 109.47095 * 300.00071 * 10 9 7 34 34 H 1.00903 * 111.00236 * 56.04753 * 11 10 9 35 35 H 0.97007 * 120.00049 * 355.38377 * 16 14 12 36 36 H 1.08002 * 120.03474 * 0.02663 * 18 17 16 37 37 H 1.08001 * 119.95990 * 180.23381 * 19 18 17 38 38 H 1.08007 * 119.92750 * 179.72114 * 20 19 18 39 39 H 1.07995 * 119.96727 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.03490 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00049 * 359.97438 * 24 23 12 42 42 H 1.08005 * 119.99929 * 180.22567 * 25 24 23 43 43 H 1.08002 * 119.99894 * 179.83785 * 26 25 24 44 44 H 1.08001 * 119.99989 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99868 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 7 5.4905 -2.6366 -0.0022 12 6 6.0170 -4.0080 -0.0027 13 1 5.3613 -4.6486 -0.5924 14 6 7.3993 -4.0153 -0.6031 15 8 7.8947 -2.9807 -0.9969 16 7 8.0823 -5.1723 -0.7081 17 6 9.3241 -5.1958 -1.3524 18 6 9.7015 -6.3063 -2.0959 19 6 10.9261 -6.3244 -2.7342 20 6 11.7804 -5.2425 -2.6252 21 6 11.4097 -4.1372 -1.8817 22 6 10.1844 -4.1109 -1.2448 23 6 6.0814 -4.5219 1.4125 24 6 6.4972 -3.6869 2.4327 25 6 6.5525 -4.1571 3.7315 26 6 6.1999 -5.4647 4.0087 27 6 5.7891 -6.3011 2.9878 28 6 5.7300 -5.8297 1.6896 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8910 32 1 3.6579 -3.1498 -0.8925 33 1 3.6586 -3.1510 0.8875 34 1 5.8521 -2.1111 0.7796 35 1 7.7130 -5.9890 -0.3370 36 1 9.0364 -7.1533 -2.1781 37 1 11.2186 -7.1863 -3.3157 38 1 12.7394 -5.2610 -3.1216 39 1 12.0789 -3.2937 -1.7988 40 1 9.8955 -3.2475 -0.6639 41 1 6.7763 -2.6665 2.2155 42 1 6.8739 -3.5037 4.5291 43 1 6.2456 -5.8328 5.0231 44 1 5.5140 -7.3227 3.2044 45 1 5.4089 -6.4832 0.8919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342545708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:23 Heat of formation + Delta-G solvation = 2.303833 kcal Electronic energy + Delta-G solvation = -26347.646854 eV Core-core repulsion = 22714.942514 eV Total energy + Delta-G solvation = -3632.704340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84746 -40.35905 -39.21976 -37.42628 -35.79603 -35.16184 -33.25503 -31.91104 -31.81180 -30.86135 -30.56442 -27.78672 -25.51436 -24.01815 -23.56962 -23.45391 -22.57977 -22.20439 -21.07159 -19.02079 -18.87529 -18.39920 -17.95121 -17.16715 -16.74662 -16.49630 -16.13897 -15.90949 -15.87162 -15.56920 -15.12444 -15.03721 -14.71937 -14.67134 -14.47679 -14.27287 -14.24779 -13.83648 -13.61547 -13.46361 -13.11074 -12.98786 -12.61520 -12.33525 -12.18859 -12.11552 -11.94689 -11.86823 -11.68713 -11.44700 -11.38601 -10.96118 -10.78731 -9.88994 -9.86615 -9.71496 -9.45775 -9.11330 -8.31884 -6.35642 0.24012 0.37604 0.43847 0.48617 1.35164 1.35696 1.48409 1.54345 1.89173 2.34346 2.79329 2.90405 3.03822 3.22259 3.50997 3.80523 3.82282 4.04511 4.08508 4.09882 4.19511 4.25508 4.32429 4.41756 4.50064 4.54506 4.57560 4.62124 4.64262 4.66998 4.91547 4.96983 5.08114 5.12852 5.19166 5.38560 5.41257 5.43058 5.49201 5.50120 5.57231 5.57855 5.59967 5.64232 5.93634 6.03809 6.12165 6.18010 6.30307 6.42939 6.71507 7.10908 7.29183 8.84449 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003260 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.984360 B = 8586.143761 C =10164.699014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.005 4.005 10 C 0.094 3.906 11 N -0.675 5.675 12 C 0.118 3.882 13 H 0.127 0.873 14 C 0.526 3.474 15 O -0.536 6.536 16 N -0.660 5.660 17 C 0.128 3.872 18 C -0.147 4.147 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.114 4.114 22 C -0.149 4.149 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.113 4.113 29 H 0.267 0.733 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.344 0.656 35 H 0.423 0.577 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.725 -19.149 2.776 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.043 4.043 10 C -0.034 4.034 11 N -0.306 5.306 12 C 0.004 3.996 13 H 0.144 0.856 14 C 0.313 3.687 15 O -0.411 6.411 16 N -0.307 5.307 17 C 0.034 3.966 18 C -0.167 4.167 19 C -0.120 4.120 20 C -0.158 4.158 21 C -0.133 4.133 22 C -0.170 4.170 23 C -0.128 4.128 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.165 0.835 35 H 0.261 0.739 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 23.894 -18.176 1.818 30.076 hybrid contribution -0.737 0.727 1.100 1.511 sum 23.156 -17.449 2.918 29.141 Atomic orbital electron populations 1.70044 1.08065 1.28169 1.52518 1.25898 0.95566 1.03192 0.94092 0.85695 0.79374 0.78683 0.79103 1.19510 1.20659 1.17554 1.21335 0.91497 0.93383 1.50528 0.94342 1.19423 0.93906 0.94418 0.96516 1.21656 0.84583 0.97644 0.99566 1.60288 1.08385 1.11194 1.50757 1.20402 0.93239 0.92335 0.93613 0.85568 1.20807 0.87157 0.83119 0.77636 1.90686 1.69530 1.33253 1.47616 1.43337 1.18286 1.12039 1.57047 1.18026 0.85402 0.96678 0.96465 1.21231 0.99079 0.98378 0.98031 1.21361 0.92973 0.99309 0.98378 1.21487 1.01182 0.93405 0.99689 1.21294 0.95521 0.99355 0.97101 1.21304 0.94391 0.98950 1.02317 1.20312 1.02292 0.95922 0.94298 1.21075 1.00285 0.99562 0.93966 1.21363 0.99822 0.96995 0.96018 1.21560 0.98023 0.93442 1.00744 1.21522 0.98483 1.01159 0.92227 1.21353 0.99148 0.94081 0.98561 0.92397 0.96587 0.96467 0.91712 0.95596 0.83513 0.73893 0.83278 0.82639 0.83483 0.84849 0.87126 0.87232 0.84701 0.83594 0.82945 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 2 C 0.01 0.58 5.47 84.65 0.46 1.05 16 3 Si 0.95 46.16 27.47 68.60 1.88 48.04 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 7 C -0.53 -31.09 9.66 25.60 0.25 -30.85 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C 0.00 -0.23 4.30 29.85 0.13 -0.11 16 10 C 0.09 3.79 5.42 86.30 0.47 4.26 16 11 N -0.67 -23.75 5.72 -499.36 -2.86 -26.61 16 12 C 0.12 3.21 2.64 43.43 0.11 3.32 16 13 H 0.13 3.04 7.66 -2.39 -0.02 3.02 16 14 C 0.53 15.04 7.05 87.66 0.62 15.66 16 15 O -0.54 -19.89 13.88 -3.04 -0.04 -19.94 16 16 N -0.66 -14.15 5.26 -303.51 -1.60 -15.74 16 17 C 0.13 2.92 6.30 38.15 0.24 3.16 16 18 C -0.15 -2.44 9.97 22.39 0.22 -2.22 16 19 C -0.10 -1.45 10.04 22.25 0.22 -1.22 16 20 C -0.14 -2.19 10.04 22.29 0.22 -1.97 16 21 C -0.11 -2.35 10.04 22.25 0.22 -2.12 16 22 C -0.15 -3.88 8.70 22.39 0.19 -3.68 16 23 C -0.13 -2.96 4.45 -19.87 -0.09 -3.05 16 24 C -0.13 -3.27 9.11 22.27 0.20 -3.07 16 25 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 26 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 27 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 28 C -0.11 -2.01 9.41 22.27 0.21 -1.80 16 29 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 31 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 32 H 0.06 2.62 8.06 -2.39 -0.02 2.60 16 33 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 34 H 0.34 12.04 6.36 -89.69 -0.57 11.47 16 35 H 0.42 6.19 8.39 -92.70 -0.78 5.41 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.11 3.44 6.23 -2.91 -0.02 3.42 16 41 H 0.11 2.97 6.53 -2.91 -0.02 2.95 16 42 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 43 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.15 1.81 8.04 -2.91 -0.02 1.79 16 Total: -1.00 -77.01 376.50 1.66 -75.35 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -0.39 Total: 27.13 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 4.36 Total: -28.44 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.15 Total: -102.15 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.04 Total: -19.94 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -77.01 1.66 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342545708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.659 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds