Wall clock time and date at job start Tue Mar 31 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21285 * 120.00261 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99742 * 180.02562 * 19 18 16 22 22 H 1.09002 * 115.54440 * 325.80591 * 21 19 18 23 23 C 1.52950 * 117.48153 * 111.39555 * 21 19 18 24 24 H 1.09004 * 118.97318 * 356.71012 * 23 21 19 25 25 C 1.50942 * 119.00012 * 202.09043 * 23 21 19 26 26 C 1.37606 * 130.73415 * 115.29740 * 25 23 21 27 27 C 1.38020 * 120.73524 * 179.51661 * 26 25 23 28 28 C 1.38245 * 119.88495 * 359.66376 * 27 26 25 29 29 C 1.38018 * 119.88005 * 0.02562 * 28 27 26 30 30 C 1.38789 * 120.30938 * 359.97438 * 29 28 27 31 31 C 1.50961 * 129.71784 * 179.97438 * 30 29 28 32 32 C 1.53047 * 117.48072 * 180.21552 * 21 19 18 33 33 H 1.09003 * 119.40906 * 4.10220 * 32 21 19 34 34 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 35 35 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 36 36 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 37 37 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 38 38 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 39 39 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 40 40 H 1.08008 * 119.42448 * 359.14514 * 26 25 23 41 41 H 1.08001 * 120.05421 * 179.64570 * 27 26 25 42 42 H 1.07999 * 120.06482 * 180.02562 * 28 27 26 43 43 H 1.07994 * 119.84777 * 179.97438 * 29 28 27 44 44 H 1.09002 * 109.92535 * 60.96787 * 31 30 29 45 45 H 1.09000 * 110.09741 * 299.75028 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1997 -7.5032 0.6920 21 6 -1.9811 -8.5059 -1.2964 22 1 -2.5855 -8.1908 -2.1470 23 6 -1.2036 -9.8163 -1.4299 24 1 -0.2027 -9.8822 -1.0033 25 6 -1.5276 -10.7461 -2.5739 26 6 -0.7664 -11.1481 -3.6475 27 6 -1.2739 -12.0278 -4.5820 28 6 -2.5581 -12.5192 -4.4393 29 6 -3.3284 -12.1279 -3.3631 30 6 -2.8197 -11.2433 -2.4224 31 6 -3.4658 -10.6793 -1.1800 32 6 -2.4400 -9.7452 -0.5245 33 1 -2.3545 -9.7612 0.5621 34 1 -0.4850 0.8400 0.0004 35 1 -0.7146 -1.7148 -0.3630 36 1 -0.5197 -2.8483 1.0094 37 1 1.8513 -4.1847 1.0018 38 1 2.9071 -3.7537 -0.3789 39 1 -1.0321 -6.1894 -2.0953 40 1 0.2369 -10.7642 -3.7600 41 1 -0.6688 -12.3316 -5.4235 42 1 -2.9580 -13.2081 -5.1687 43 1 -4.3318 -12.5117 -3.2523 44 1 -3.7226 -11.4876 -0.4953 45 1 -4.3622 -10.1189 -1.4455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026092607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:35 Heat of formation + Delta-G solvation = 86.532371 kcal Electronic energy + Delta-G solvation = -25719.037670 eV Core-core repulsion = 22089.985754 eV Total energy + Delta-G solvation = -3629.051916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25565 -39.60015 -38.31934 -36.94840 -34.37652 -32.65940 -32.08479 -30.93175 -30.12909 -28.10105 -27.05780 -25.97004 -24.72231 -22.72541 -21.82428 -21.03262 -20.69089 -20.47540 -19.78829 -19.17586 -17.54492 -16.92631 -16.51838 -16.31480 -15.61304 -15.47589 -14.88641 -14.61855 -14.55229 -13.89075 -13.86103 -13.63316 -13.26380 -13.17145 -12.92571 -12.81071 -12.73101 -12.20475 -12.07785 -11.68013 -11.50694 -11.33405 -11.15876 -11.10838 -10.91879 -10.83270 -10.38535 -10.35167 -10.22231 -10.03795 -9.88323 -9.67249 -9.19423 -9.12424 -8.81569 -8.79934 -8.34365 -6.93026 -5.66740 -3.10908 0.91813 1.04482 2.38356 2.94331 3.27306 3.39987 3.43846 3.45289 3.60529 4.02902 4.23017 4.34421 4.46805 4.47967 4.54205 4.68844 4.72118 4.74728 4.88544 5.02171 5.14389 5.18269 5.25908 5.35578 5.41471 5.42141 5.43424 5.56836 5.59852 5.67403 5.72710 5.80637 5.90840 5.93893 6.09837 6.16779 6.17526 6.26349 6.30932 6.54402 6.63822 6.67142 6.81708 6.88883 7.31752 7.53280 7.56791 7.78873 8.25128 8.26926 9.11796 9.75954 10.47191 11.36632 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.002032 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.546585 B =13777.898712 C =14124.532165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.171 4.171 12 H 0.102 0.898 13 C -0.185 4.185 14 H 0.102 0.898 15 C 0.160 3.840 16 C 0.092 3.908 17 H 0.131 0.869 18 N -0.691 5.691 19 C 0.547 3.453 20 O -0.536 6.536 21 C -0.148 4.148 22 H 0.123 0.877 23 C -0.099 4.099 24 H 0.123 0.877 25 C -0.067 4.067 26 C -0.097 4.097 27 C -0.122 4.122 28 C -0.117 4.117 29 C -0.110 4.110 30 C -0.093 4.093 31 C -0.056 4.056 32 C -0.120 4.120 33 H 0.137 0.863 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.018 0.982 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.400 0.600 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -25.037 -8.833 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.032 3.968 11 C -0.192 4.192 12 H 0.120 0.880 13 C -0.207 4.207 14 H 0.120 0.880 15 C 0.033 3.967 16 C -0.014 4.014 17 H 0.148 0.852 18 N -0.338 5.338 19 C 0.333 3.667 20 O -0.413 6.413 21 C -0.169 4.169 22 H 0.141 0.859 23 C -0.118 4.118 24 H 0.141 0.859 25 C -0.067 4.067 26 C -0.115 4.115 27 C -0.140 4.140 28 C -0.135 4.135 29 C -0.128 4.128 30 C -0.093 4.093 31 C -0.092 4.092 32 C -0.139 4.139 33 H 0.154 0.846 34 H 0.065 0.935 35 H 0.154 0.846 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.234 0.766 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.109 0.891 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.246 -24.817 -7.942 27.046 hybrid contribution 0.490 0.801 -0.806 1.237 sum -6.757 -24.017 -8.749 26.438 Atomic orbital electron populations 1.69472 1.04963 1.24898 1.57899 1.24764 0.95717 0.97727 1.02770 0.86081 0.78333 0.82789 0.77874 1.21202 1.21538 1.21204 1.19067 0.90366 0.82172 1.42659 0.90290 1.46127 1.01338 0.99384 1.85678 1.22563 0.85405 0.95187 0.93690 1.24645 0.99786 0.91755 1.03001 0.88036 1.24382 0.91157 1.02731 1.02380 0.88007 1.21071 0.94796 0.85813 0.94971 1.21948 0.97663 0.85524 0.96278 0.85188 1.45307 1.60446 1.16877 1.11206 1.19356 0.77815 0.82103 0.87388 1.90708 1.55992 1.80054 1.14570 1.22200 1.03700 0.88593 1.02443 0.85927 1.21365 0.98335 0.95206 0.96868 0.85921 1.19711 0.94455 0.97541 0.94998 1.20404 0.99968 0.97659 0.93510 1.21033 0.95978 0.97803 0.99140 1.21051 0.94533 1.00138 0.97776 1.20650 1.00040 0.97920 0.94175 1.20929 0.94752 0.96930 0.96648 1.20319 0.97711 0.97686 0.93519 1.22949 0.95672 0.95998 0.99246 0.84552 0.93512 0.84594 0.96404 0.95554 0.93035 0.76588 0.86067 0.85713 0.85790 0.86072 0.89126 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.12 55.49 0.56 -26.12 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.21 -5.97 10.42 -15.06 -0.16 -6.13 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.52 3.46 -165.73 -0.57 -16.09 16 10 C 0.16 3.78 6.43 -0.29 0.00 3.77 16 11 C -0.17 -3.29 6.96 -89.22 -0.62 -3.92 16 12 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 13 C -0.18 -3.38 7.06 -89.24 -0.63 -4.01 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 15 C 0.16 3.42 7.05 -2.43 -0.02 3.41 16 16 C 0.09 1.57 5.96 -67.93 -0.41 1.17 16 17 H 0.13 2.51 7.40 -51.93 -0.38 2.13 16 18 N -0.69 -9.49 5.56 -53.81 -0.30 -9.79 16 19 C 0.55 7.72 7.61 -10.99 -0.08 7.63 16 20 O -0.54 -9.58 15.90 5.55 0.09 -9.50 16 21 C -0.15 -1.56 5.76 -91.77 -0.53 -2.09 16 22 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 23 C -0.10 -1.00 6.54 -91.47 -0.60 -1.59 16 24 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 25 C -0.07 -0.64 6.00 -104.35 -0.63 -1.26 16 26 C -0.10 -0.84 9.97 -39.89 -0.40 -1.24 16 27 C -0.12 -0.91 10.04 -39.66 -0.40 -1.30 16 28 C -0.12 -0.83 10.05 -39.66 -0.40 -1.23 16 29 C -0.11 -0.83 10.04 -39.46 -0.40 -1.23 16 30 C -0.09 -0.81 6.15 -103.91 -0.64 -1.45 16 31 C -0.06 -0.43 6.57 -27.53 -0.18 -0.61 16 32 C -0.12 -1.17 6.56 -90.15 -0.59 -1.76 16 33 H 0.14 1.43 7.79 -51.93 -0.40 1.03 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.14 3.67 5.34 -51.93 -0.28 3.39 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.40 4.43 8.83 -40.82 -0.36 4.07 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -32.05 371.60 -12.88 -44.93 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.47 Total: 6.35 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -6.77 Total: -12.35 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.31 Total: -52.00 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.05 -12.88 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026092607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.464 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds