Wall clock time and date at job start Tue Mar 31 2020 14:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86808 * 119.99684 * 2 1 4 4 H 1.48498 * 109.47203 * 89.99938 * 3 2 1 5 5 H 1.48496 * 109.46918 * 209.99853 * 3 2 1 6 6 H 1.48504 * 109.46873 * 329.99906 * 3 2 1 7 7 C 1.40024 * 120.00681 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99503 * 15.58371 * 7 2 1 9 9 C 1.41307 * 120.00331 * 195.58813 * 7 2 1 10 10 C 1.40597 * 119.78500 * 188.79952 * 9 7 2 11 11 C 1.38345 * 119.14384 * 179.79121 * 10 9 7 12 12 C 1.38634 * 118.68607 * 0.47420 * 11 10 9 13 13 C 1.39753 * 119.49099 * 359.75159 * 12 11 10 14 14 N 1.38823 * 119.58612 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00059 * 355.50424 * 14 13 12 16 16 H 1.08999 * 109.46977 * 37.76051 * 15 14 13 17 17 C 1.50707 * 109.47060 * 277.76333 * 15 14 13 18 18 C 1.38233 * 119.99737 * 319.72309 * 17 15 14 19 19 C 1.38231 * 119.99779 * 179.76584 * 18 17 15 20 20 C 1.38238 * 120.00150 * 0.48922 * 19 18 17 21 21 C 1.38240 * 119.99937 * 359.78426 * 20 19 18 22 22 C 1.38229 * 119.99710 * 139.99787 * 17 15 14 23 23 C 1.53001 * 109.47278 * 157.76094 * 15 14 13 24 24 H 1.08996 * 109.82212 * 56.02655 * 23 15 14 25 25 C 1.54370 * 109.83199 * 295.04174 * 23 15 14 26 26 C 1.55303 * 102.25689 * 219.12794 * 25 23 15 27 27 C 1.54950 * 100.93674 * 34.13496 * 26 25 23 28 28 O 1.43238 * 109.82839 * 176.90686 * 23 15 14 29 29 N 1.31980 * 120.83175 * 0.02562 * 13 12 11 30 30 H 0.97005 * 119.99791 * 174.92819 * 1 2 3 31 31 H 1.07998 * 120.42128 * 0.02562 * 10 9 7 32 32 H 1.08006 * 120.65547 * 180.19774 * 11 10 9 33 33 H 1.08003 * 120.25691 * 179.72230 * 12 11 10 34 34 H 0.97001 * 120.00008 * 175.50187 * 14 13 12 35 35 H 1.08000 * 120.00309 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.00355 * 180.25333 * 19 18 17 37 37 H 1.07999 * 120.00135 * 179.76939 * 20 19 18 38 38 H 1.07995 * 120.00357 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.00702 * 0.02562 * 22 17 15 40 40 H 1.09000 * 110.84998 * 337.32245 * 25 23 15 41 41 H 1.09002 * 110.84834 * 100.93864 * 25 23 15 42 42 H 1.08996 * 111.12565 * 276.22033 * 26 25 23 43 43 H 1.09003 * 111.12867 * 152.05067 * 26 25 23 44 44 H 1.09000 * 110.30696 * 204.63556 * 27 26 25 45 45 H 1.08999 * 110.30682 * 82.47453 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.4888 2.0466 1.4000 5 1 3.5388 1.4403 -0.7000 6 1 1.4386 2.6527 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.4975 -2.1308 -0.2503 9 6 3.3817 -1.2348 0.3294 10 6 4.1236 -2.4157 0.1506 11 6 5.4690 -2.4214 0.4728 12 6 6.0386 -1.2603 0.9721 13 6 5.2475 -0.1194 1.1318 14 7 5.8158 1.0442 1.6321 15 6 7.2102 1.0440 2.0812 16 1 7.8053 0.4156 1.4185 17 6 7.2854 0.5044 3.4864 18 6 6.3238 0.8575 4.4146 19 6 6.3900 0.3587 5.7021 20 6 7.4234 -0.4850 6.0643 21 6 8.3882 -0.8336 5.1375 22 6 8.3190 -0.3390 3.8485 23 6 7.7551 2.4734 2.0539 24 1 7.1220 3.1219 2.6596 25 6 7.7980 2.9899 0.5998 26 6 9.1309 3.7864 0.5721 27 6 9.9990 2.9405 1.5374 28 8 9.0950 2.4924 2.5598 29 7 3.9666 -0.1345 0.8139 30 1 -0.4850 -0.8368 -0.0743 31 1 3.6500 -3.3056 -0.2368 32 1 6.0627 -3.3141 0.3421 33 1 7.0857 -1.2378 1.2361 34 1 5.2895 1.8573 1.6844 35 1 5.5190 1.5203 4.1330 36 1 5.6366 0.6313 6.4263 37 1 7.4772 -0.8717 7.0712 38 1 9.1957 -1.4925 5.4205 39 1 9.0729 -0.6110 3.1247 40 1 7.8274 2.1598 -0.1060 41 1 6.9507 3.6444 0.3954 42 1 8.9920 4.7981 0.9531 43 1 9.5590 3.8013 -0.4303 44 1 10.7882 3.5538 1.9724 45 1 10.4282 2.0877 1.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:19 Heat of formation + Delta-G solvation = 3.477110 kcal Electronic energy + Delta-G solvation = -27662.554886 eV Core-core repulsion = 24029.901423 eV Total energy + Delta-G solvation = -3632.653463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.22280 -38.79432 -38.42622 -35.63308 -33.60112 -32.22797 -31.69483 -30.85240 -30.66330 -29.60442 -28.38002 -25.33810 -25.16884 -22.56036 -22.28101 -21.70841 -21.47597 -21.04063 -19.83119 -18.28286 -17.17883 -16.74395 -16.70492 -15.91563 -15.45593 -15.18263 -14.71342 -14.52076 -14.30929 -13.94702 -13.68544 -13.63958 -13.33784 -13.15196 -12.95844 -12.76419 -12.46004 -12.21294 -12.03843 -11.86806 -11.77807 -11.56726 -11.41609 -11.02597 -10.95372 -10.83147 -10.70106 -10.53989 -10.12914 -9.72296 -9.68458 -9.46878 -8.93440 -8.66129 -8.49417 -8.38978 -7.74339 -7.23059 -6.86658 -4.70684 1.57982 1.65970 2.73693 2.86562 3.37488 3.53051 3.65038 3.93496 3.98855 4.10375 4.35588 4.40446 4.64339 4.68360 4.72649 4.97160 4.97952 5.08692 5.13848 5.21690 5.29176 5.34220 5.51483 5.53170 5.59545 5.66139 5.69976 5.76875 5.79579 5.86977 5.92073 6.03990 6.18707 6.23615 6.36832 6.53066 6.59878 6.66774 6.67385 6.71855 6.84453 6.92069 7.23042 7.30041 7.48513 7.51413 7.66095 7.90638 8.04808 8.31856 8.50777 8.78142 9.65910 10.03498 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.004792 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.263099 B = 5841.523640 C = 6863.082426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.050 3.950 3 Si 1.147 2.853 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.332 1.332 7 C -0.482 4.482 8 H 0.081 0.919 9 C 0.288 3.712 10 C -0.306 4.306 11 C -0.019 4.019 12 C -0.358 4.358 13 C 0.442 3.558 14 N -0.730 5.730 15 C 0.194 3.806 16 H 0.090 0.910 17 C -0.078 4.078 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.097 4.097 23 C 0.082 3.918 24 H 0.084 0.916 25 C -0.149 4.149 26 C -0.156 4.156 27 C 0.048 3.952 28 O -0.365 6.365 29 N -0.615 5.615 30 H 0.283 0.717 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.394 0.606 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.637 5.929 5.181 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.172 4.172 3 Si 0.980 3.020 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.099 0.901 9 C 0.164 3.836 10 C -0.328 4.328 11 C -0.043 4.043 12 C -0.384 4.384 13 C 0.206 3.794 14 N -0.366 5.366 15 C 0.087 3.913 16 H 0.108 0.892 17 C -0.080 4.080 18 C -0.115 4.115 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.116 4.116 23 C 0.023 3.977 24 H 0.102 0.898 25 C -0.187 4.187 26 C -0.194 4.194 27 C -0.028 4.028 28 O -0.283 6.283 29 N -0.342 5.342 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.228 0.772 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.061 8.015 5.566 19.655 hybrid contribution 0.229 -2.473 -0.245 2.495 sum 17.291 5.542 5.321 18.921 Atomic orbital electron populations 1.70619 1.08336 1.32947 1.30960 1.27681 0.95176 1.06047 0.88267 0.82070 0.72629 0.69865 0.77400 1.21551 1.20630 1.26480 1.20673 0.93304 0.96800 1.40601 0.90092 1.18166 0.92744 0.86096 0.86556 1.21409 0.94701 0.99847 1.16878 1.20687 0.94426 0.95710 0.93475 1.20469 0.99193 0.94973 1.23747 1.17939 0.88648 0.84990 0.87861 1.44053 1.10730 1.10833 1.70985 1.19923 0.83875 0.95725 0.91799 0.89230 1.20194 0.94977 0.97160 0.95692 1.20911 0.98043 0.99677 0.92878 1.21068 0.98344 0.98314 0.96428 1.21046 0.95325 0.98822 0.99209 1.21019 0.99107 1.00459 0.93728 1.20856 0.97611 0.96887 0.96202 1.22841 0.85041 0.94994 0.94806 0.89802 1.23181 0.98337 1.00791 0.96375 1.23275 0.95705 0.99717 1.00688 1.23405 0.92975 0.97166 0.89298 1.88486 1.15754 1.87991 1.36056 1.66213 1.09490 1.30238 1.28278 0.90558 0.88280 0.88386 0.88361 0.77163 0.86467 0.86548 0.86702 0.86591 0.86608 0.89743 0.89609 0.90421 0.89907 0.89795 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.23 13.65 55.55 0.76 -21.47 16 2 C 0.05 1.37 5.51 -17.35 -0.10 1.27 16 3 Si 1.15 27.90 25.94 -169.99 -4.41 23.49 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.78 6.53 56.52 0.37 -6.41 16 6 H -0.33 -7.95 7.11 56.52 0.40 -7.55 16 7 C -0.48 -13.36 9.51 -37.75 -0.36 -13.72 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 C 0.29 7.67 6.27 -85.00 -0.53 7.14 16 10 C -0.31 -7.43 9.83 -38.65 -0.38 -7.81 16 11 C -0.02 -0.41 10.15 -39.40 -0.40 -0.81 16 12 C -0.36 -7.59 9.19 -38.87 -0.36 -7.94 16 13 C 0.44 9.75 7.58 -155.32 -1.18 8.57 16 14 N -0.73 -12.93 4.26 -55.03 -0.23 -13.17 16 15 C 0.19 2.85 1.54 -69.08 -0.11 2.74 16 16 H 0.09 1.35 6.21 -51.93 -0.32 1.03 16 17 C -0.08 -1.20 4.35 -104.62 -0.45 -1.65 16 18 C -0.10 -1.51 9.32 -39.59 -0.37 -1.88 16 19 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 20 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.10 -1.38 9.66 -39.58 -0.38 -1.76 16 23 C 0.08 1.00 3.12 -26.01 -0.08 0.92 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.15 -1.60 6.30 -24.79 -0.16 -1.76 16 26 C -0.16 -1.32 7.16 -24.48 -0.18 -1.49 16 27 C 0.05 0.44 7.78 38.19 0.30 0.74 16 28 O -0.36 -4.50 10.56 -35.23 -0.37 -4.87 16 29 N -0.61 -15.53 5.05 -10.33 -0.05 -15.58 16 30 H 0.28 7.49 8.73 -40.82 -0.36 7.13 16 31 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.10 1.86 6.15 -52.48 -0.32 1.54 16 34 H 0.39 6.76 8.70 -40.82 -0.36 6.41 16 35 H 0.12 1.83 7.73 -52.49 -0.41 1.42 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.48 8.04 -52.49 -0.42 1.05 16 40 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -30.37 368.15 -11.18 -41.54 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.49 Total: 8.21 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -5.92 Total: -23.69 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.47 Total: -50.23 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.37 Total: -4.87 kcal Atomic # 14 Polarization: 27.90 SS G_CDS: -4.41 Total: 23.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.37 -11.18 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.020 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds