Wall clock time and date at job start Tue Mar 31 2020 14:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86808 * 119.99684 * 2 1 4 4 H 1.48498 * 109.47203 * 89.99938 * 3 2 1 5 5 H 1.48496 * 109.46918 * 209.99853 * 3 2 1 6 6 H 1.48504 * 109.46873 * 329.99906 * 3 2 1 7 7 C 1.40024 * 120.00681 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99503 * 15.58371 * 7 2 1 9 9 C 1.41307 * 120.00331 * 195.58813 * 7 2 1 10 10 C 1.40597 * 119.78500 * 188.79952 * 9 7 2 11 11 C 1.38345 * 119.14384 * 179.79121 * 10 9 7 12 12 C 1.38634 * 118.68607 * 0.47420 * 11 10 9 13 13 C 1.39753 * 119.49099 * 359.75159 * 12 11 10 14 14 N 1.38823 * 119.58612 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00059 * 355.50424 * 14 13 12 16 16 H 1.08999 * 109.46977 * 37.76051 * 15 14 13 17 17 C 1.50707 * 109.47060 * 277.76333 * 15 14 13 18 18 C 1.38233 * 119.99737 * 319.72309 * 17 15 14 19 19 C 1.38231 * 119.99779 * 179.76584 * 18 17 15 20 20 C 1.38238 * 120.00150 * 0.48922 * 19 18 17 21 21 C 1.38240 * 119.99937 * 359.78426 * 20 19 18 22 22 C 1.38229 * 119.99710 * 139.99787 * 17 15 14 23 23 C 1.53001 * 109.47278 * 157.76094 * 15 14 13 24 24 H 1.08996 * 109.82212 * 56.02655 * 23 15 14 25 25 C 1.54370 * 109.83199 * 295.04174 * 23 15 14 26 26 C 1.55303 * 102.25689 * 219.12794 * 25 23 15 27 27 C 1.54950 * 100.93674 * 34.13496 * 26 25 23 28 28 O 1.43238 * 109.82839 * 176.90686 * 23 15 14 29 29 N 1.31980 * 120.83175 * 0.02562 * 13 12 11 30 30 H 0.97005 * 119.99791 * 174.92819 * 1 2 3 31 31 H 1.07998 * 120.42128 * 0.02562 * 10 9 7 32 32 H 1.08006 * 120.65547 * 180.19774 * 11 10 9 33 33 H 1.08003 * 120.25691 * 179.72230 * 12 11 10 34 34 H 0.97001 * 120.00008 * 175.50187 * 14 13 12 35 35 H 1.08000 * 120.00309 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.00355 * 180.25333 * 19 18 17 37 37 H 1.07999 * 120.00135 * 179.76939 * 20 19 18 38 38 H 1.07995 * 120.00357 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.00702 * 0.02562 * 22 17 15 40 40 H 1.09000 * 110.84998 * 337.32245 * 25 23 15 41 41 H 1.09002 * 110.84834 * 100.93864 * 25 23 15 42 42 H 1.08996 * 111.12565 * 276.22033 * 26 25 23 43 43 H 1.09003 * 111.12867 * 152.05067 * 26 25 23 44 44 H 1.09000 * 110.30696 * 204.63556 * 27 26 25 45 45 H 1.08999 * 110.30682 * 82.47453 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.4888 2.0466 1.4000 5 1 3.5388 1.4403 -0.7000 6 1 1.4386 2.6527 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.4975 -2.1308 -0.2503 9 6 3.3817 -1.2348 0.3294 10 6 4.1236 -2.4157 0.1506 11 6 5.4690 -2.4214 0.4728 12 6 6.0386 -1.2603 0.9721 13 6 5.2475 -0.1194 1.1318 14 7 5.8158 1.0442 1.6321 15 6 7.2102 1.0440 2.0812 16 1 7.8053 0.4156 1.4185 17 6 7.2854 0.5044 3.4864 18 6 6.3238 0.8575 4.4146 19 6 6.3900 0.3587 5.7021 20 6 7.4234 -0.4850 6.0643 21 6 8.3882 -0.8336 5.1375 22 6 8.3190 -0.3390 3.8485 23 6 7.7551 2.4734 2.0539 24 1 7.1220 3.1219 2.6596 25 6 7.7980 2.9899 0.5998 26 6 9.1309 3.7864 0.5721 27 6 9.9990 2.9405 1.5374 28 8 9.0950 2.4924 2.5598 29 7 3.9666 -0.1345 0.8139 30 1 -0.4850 -0.8368 -0.0743 31 1 3.6500 -3.3056 -0.2368 32 1 6.0627 -3.3141 0.3421 33 1 7.0857 -1.2378 1.2361 34 1 5.2895 1.8573 1.6844 35 1 5.5190 1.5203 4.1330 36 1 5.6366 0.6313 6.4263 37 1 7.4772 -0.8717 7.0712 38 1 9.1957 -1.4925 5.4205 39 1 9.0729 -0.6110 3.1247 40 1 7.8274 2.1598 -0.1060 41 1 6.9507 3.6444 0.3954 42 1 8.9920 4.7981 0.9531 43 1 9.5590 3.8013 -0.4303 44 1 10.7882 3.5538 1.9724 45 1 10.4282 2.0877 1.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:18 Heat of formation + Delta-G solvation = -11.915553 kcal Electronic energy + Delta-G solvation = -27663.222361 eV Core-core repulsion = 24029.901423 eV Total energy + Delta-G solvation = -3633.320939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33543 -40.25227 -39.62843 -37.06482 -35.51377 -33.21632 -33.03837 -32.61330 -31.73654 -30.73450 -29.80072 -27.19370 -26.31635 -23.85660 -23.30846 -23.12954 -22.59806 -22.32634 -21.21405 -20.23135 -18.49018 -17.86567 -17.82655 -16.99407 -16.85926 -16.39740 -16.12125 -16.00225 -15.82939 -15.35794 -14.98014 -14.87220 -14.56581 -14.34987 -14.26357 -14.17347 -14.02147 -13.64232 -13.60731 -13.24429 -12.79017 -12.67413 -12.54181 -12.35893 -12.13075 -12.07521 -11.90981 -11.86278 -11.70816 -11.66543 -11.24860 -10.78963 -10.55697 -10.28113 -9.74336 -9.69531 -9.54278 -9.24752 -8.58006 -6.75218 0.50029 0.57821 0.83339 1.04847 1.53903 1.70600 1.97929 2.18517 2.45113 2.68977 2.92868 3.05567 3.56490 3.62948 3.71023 3.85958 4.01836 4.04146 4.18200 4.20483 4.23206 4.27646 4.31425 4.38607 4.52667 4.63507 4.70345 4.74789 4.78046 4.83525 4.84491 4.89125 4.94057 4.97689 5.04071 5.14334 5.20242 5.25565 5.41385 5.49762 5.61897 5.66063 5.67978 5.74682 5.88568 5.98557 6.04071 6.18341 6.21003 6.57802 6.60545 6.91529 7.77318 7.97988 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.004792 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.263099 B = 5841.523640 C = 6863.082426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.022 3.978 3 Si 1.182 2.818 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.327 1.327 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.275 3.725 10 C -0.331 4.331 11 C -0.012 4.012 12 C -0.342 4.342 13 C 0.433 3.567 14 N -0.719 5.719 15 C 0.196 3.804 16 H 0.090 0.910 17 C -0.092 4.092 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.108 4.108 23 C 0.088 3.912 24 H 0.081 0.919 25 C -0.152 4.152 26 C -0.147 4.147 27 C 0.041 3.959 28 O -0.380 6.380 29 N -0.633 5.633 30 H 0.279 0.721 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.396 0.604 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.422 6.353 6.069 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.195 4.195 3 Si 1.013 2.987 4 H -0.211 1.211 5 H -0.208 1.208 6 H -0.260 1.260 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.150 3.850 10 C -0.354 4.354 11 C -0.036 4.036 12 C -0.367 4.367 13 C 0.195 3.805 14 N -0.354 5.354 15 C 0.090 3.910 16 H 0.108 0.892 17 C -0.094 4.094 18 C -0.140 4.140 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.126 4.126 23 C 0.029 3.971 24 H 0.099 0.901 25 C -0.189 4.189 26 C -0.184 4.184 27 C -0.035 4.035 28 O -0.298 6.298 29 N -0.361 5.361 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.231 0.769 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.884 8.456 6.472 23.442 hybrid contribution -0.642 -2.667 -0.403 2.773 sum 20.242 5.789 6.069 21.911 Atomic orbital electron populations 1.70648 1.08644 1.32711 1.33573 1.28480 0.95419 1.07858 0.87744 0.81614 0.71733 0.67908 0.77471 1.21089 1.20812 1.26036 1.20646 0.94531 0.96366 1.43657 0.92064 1.18297 0.92651 0.87452 0.86624 1.21529 0.96083 0.99370 1.18391 1.21106 0.93547 0.97282 0.91641 1.20891 1.00415 0.94228 1.21191 1.18302 0.87970 0.86745 0.87476 1.44154 1.11972 1.09567 1.69696 1.20075 0.81834 0.97504 0.91555 0.89249 1.20261 0.95571 0.97900 0.95643 1.20998 0.98428 1.00611 0.93953 1.21328 0.99234 0.98580 0.96251 1.21404 0.94661 0.98069 1.00571 1.21401 0.99596 1.00157 0.93213 1.21107 0.97624 0.96687 0.97217 1.22706 0.85306 0.93271 0.95770 0.90083 1.23185 0.99924 1.00838 0.94982 1.23260 0.94022 0.99579 1.01534 1.23631 0.92908 0.97843 0.89087 1.88471 1.15830 1.88215 1.37324 1.66155 1.11161 1.30083 1.28698 0.90995 0.88125 0.84520 0.85456 0.76944 0.87579 0.85408 0.84129 0.83837 0.85200 0.90750 0.89432 0.89581 0.88259 0.88073 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.70 13.65 21.84 0.30 -47.40 16 2 C 0.02 1.22 5.51 85.29 0.47 1.69 16 3 Si 1.18 57.66 25.94 68.60 1.78 59.44 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.28 -13.56 6.53 99.48 0.65 -12.91 16 6 H -0.33 -15.52 7.11 99.48 0.71 -14.81 16 7 C -0.52 -30.06 9.51 23.46 0.22 -29.84 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 C 0.28 14.86 6.27 40.19 0.25 15.11 16 10 C -0.33 -16.00 9.83 22.87 0.22 -15.78 16 11 C -0.01 -0.48 10.15 22.39 0.23 -0.25 16 12 C -0.34 -13.53 9.19 22.73 0.21 -13.32 16 13 C 0.43 18.46 7.58 133.40 1.01 19.47 16 14 N -0.72 -24.51 4.26 -328.03 -1.40 -25.91 16 15 C 0.20 5.37 1.54 44.25 0.07 5.44 16 16 H 0.09 2.44 6.21 -2.39 -0.01 2.43 16 17 C -0.09 -2.63 4.35 -19.87 -0.09 -2.72 16 18 C -0.12 -3.67 9.32 22.27 0.21 -3.46 16 19 C -0.14 -3.66 10.05 22.27 0.22 -3.44 16 20 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 21 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 22 C -0.11 -2.75 9.66 22.27 0.22 -2.53 16 23 C 0.09 2.00 3.12 31.06 0.10 2.10 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 C -0.15 -2.94 6.30 31.85 0.20 -2.73 16 26 C -0.15 -2.03 7.16 32.05 0.23 -1.81 16 27 C 0.04 0.63 7.78 72.65 0.56 1.20 16 28 O -0.38 -8.46 10.56 -148.98 -1.57 -10.03 16 29 N -0.63 -31.87 5.05 -186.59 -0.94 -32.82 16 30 H 0.28 15.58 8.73 -92.70 -0.81 14.78 16 31 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.13 4.30 6.15 -2.91 -0.02 4.29 16 34 H 0.40 13.27 8.70 -92.71 -0.81 12.46 16 35 H 0.11 3.32 7.73 -2.91 -0.02 3.30 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.13 2.85 8.04 -2.91 -0.02 2.83 16 40 H 0.07 1.59 7.80 -2.39 -0.02 1.57 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -66.51 368.15 3.04 -63.46 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.09 Total: 29.59 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 4.79 Total: -36.33 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -2.04 Total: -106.13 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.57 Total: -10.03 kcal Atomic # 14 Polarization: 57.66 SS G_CDS: 1.78 Total: 59.44 kcal Total: -66.51 3.04 -63.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.547 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds