Wall clock time and date at job start Tue Mar 31 2020 14:29:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38107 * 120.03567 * 2 1
4 4 C 1.38285 * 120.07108 * 179.72682 * 3 2 1
5 5 C 1.38289 * 120.15492 * 0.29341 * 4 3 2
6 6 C 1.38103 * 120.06971 * 359.97438 * 5 4 3
7 7 C 1.50707 * 120.03304 * 180.02562 * 6 5 4
8 8 C 1.38903 * 119.92709 * 0.02562 * 6 5 4
9 9 N 1.39682 * 120.07477 * 180.02562 * 8 6 5
10 10 C 1.46898 * 110.99756 * 270.56395 * 9 8 6
11 11 C 1.50703 * 109.47130 * 184.93244 * 10 9 8
12 12 O 1.21285 * 119.99306 * 359.97438 * 11 10 9
13 13 N 1.34769 * 120.00252 * 179.97438 * 11 10 9
14 14 C 1.39238 * 120.00210 * 185.23753 * 13 11 10
15 15 C 1.39480 * 119.83533 * 212.42885 * 14 13 11
16 16 C 1.36376 * 120.16892 * 179.76178 * 15 14 13
17 17 C 1.40864 * 119.82927 * 0.50797 * 16 15 14
18 18 C 1.41150 * 120.16508 * 179.72590 * 17 16 15
19 19 H 1.08003 * 119.99686 * 205.89654 * 18 17 16
20 20 C 1.39902 * 120.00313 * 25.89095 * 18 17 16
21 21 N 1.30870 * 119.99974 * 16.47263 * 20 18 17
22 22 Si 1.86800 * 120.00395 * 196.47289 * 20 18 17
23 23 H 1.48502 * 109.47214 * 89.99811 * 22 20 18
24 24 H 1.48494 * 109.47336 * 210.00304 * 22 20 18
25 25 H 1.48509 * 109.46772 * 330.00196 * 22 20 18
26 26 C 1.40873 * 119.66957 * 359.74186 * 17 16 15
27 27 C 1.36376 * 119.82889 * 0.02562 * 26 17 16
28 28 H 1.09000 * 109.47379 * 95.11004 * 1 2 3
29 29 H 1.09005 * 109.47263 * 215.10326 * 1 2 3
30 30 H 1.08998 * 109.47436 * 335.10677 * 1 2 3
31 31 H 1.07996 * 119.96131 * 0.02562 * 3 2 1
32 32 H 1.08007 * 119.92296 * 180.27545 * 4 3 2
33 33 H 1.07996 * 119.96011 * 180.02562 * 5 4 3
34 34 H 1.09005 * 109.46813 * 90.00204 * 7 6 5
35 35 H 1.08996 * 109.46962 * 209.99495 * 7 6 5
36 36 H 1.08996 * 109.47291 * 330.00432 * 7 6 5
37 37 H 1.00897 * 110.99557 * 34.51716 * 9 8 6
38 38 H 1.08998 * 109.46864 * 304.93110 * 10 9 8
39 39 H 1.08994 * 109.47578 * 64.93388 * 10 9 8
40 40 H 0.96998 * 119.99821 * 5.24280 * 13 11 10
41 41 H 1.08008 * 119.91388 * 0.02562 * 15 14 13
42 42 H 1.07998 * 120.08432 * 180.25220 * 16 15 14
43 43 H 0.97001 * 120.00056 * 180.02562 * 21 20 18
44 44 H 1.08002 * 120.08144 * 179.97438 * 26 17 16
45 45 H 1.07996 * 119.91289 * 179.97438 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1982 1.1956 0.0000
4 6 3.5810 1.1965 0.0057
5 6 4.2765 0.0012 0.0053
6 6 3.5914 -1.1980 -0.0003
7 6 4.3501 -2.5001 -0.0001
8 6 2.2024 -1.2025 -0.0060
9 7 1.5064 -2.4136 -0.0111
10 6 1.2615 -2.8741 -1.3843
11 6 0.4069 -4.1150 -1.3531
12 8 0.0386 -4.5710 -0.2913
13 7 0.0519 -4.7180 -2.5049
14 6 -0.8258 -5.7987 -2.4834
15 6 -0.7000 -6.8139 -3.4315
16 6 -1.5528 -7.8779 -3.4137
17 6 -2.5696 -7.9447 -2.4410
18 6 -3.4598 -9.0398 -2.4196
19 1 -4.4472 -8.9249 -1.9973
20 6 -3.0633 -10.2741 -2.9455
21 7 -1.7952 -10.5177 -3.1583
22 14 -4.3438 -11.5745 -3.3440
23 1 -4.8020 -11.4047 -4.7463
24 1 -3.7471 -12.9241 -3.1781
25 1 -5.5006 -11.4282 -2.4242
26 6 -2.6936 -6.9129 -1.4899
27 6 -1.8303 -5.8576 -1.5175
28 1 -0.3634 -0.0915 -1.0236
29 1 -0.3634 -0.8408 0.5910
30 1 -0.3634 0.9322 0.4326
31 1 1.6582 2.1309 0.0004
32 1 4.1192 2.1329 0.0102
33 1 5.3564 0.0055 0.0102
34 1 4.5288 -2.8164 1.0276
35 1 3.7662 -3.2609 -0.5180
36 1 5.3041 -2.3649 -0.5096
37 1 1.9970 -3.1147 0.5234
38 1 0.7469 -2.0926 -1.9433
39 1 2.2123 -3.1000 -1.8669
40 1 0.4079 -4.3991 -3.3490
41 1 0.0777 -6.7593 -4.1791
42 1 -1.4516 -8.6652 -4.1459
43 1 -1.5203 -11.3734 -3.5233
44 1 -3.4710 -6.9571 -0.7415
45 1 -1.9244 -5.0656 -0.7893
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000022895074.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:29:11
Heat of formation + Delta-G solvation = 9.415308 kcal
Electronic energy + Delta-G solvation = -25891.526495 eV
Core-core repulsion = 22259.130532 eV
Total energy + Delta-G solvation = -3632.395963 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.36630 -39.42708 -37.31729 -35.56804 -34.39120 -33.73229 -32.96988 -30.92722
-29.60708 -29.14764 -27.88634 -26.83049 -25.97017 -24.44044 -21.73696 -21.32688
-20.94543 -20.71126 -19.62905 -17.63921 -17.27557 -16.75204 -16.52049 -15.92960
-15.24413 -15.06756 -14.93049 -14.90317 -14.02391 -13.90646 -13.74722 -13.39594
-13.28065 -13.13582 -13.09082 -12.85162 -12.61260 -12.38092 -12.09497 -11.99589
-11.83344 -11.73451 -11.39814 -11.32395 -11.26250 -11.13410 -10.98858 -10.74340
-10.02139 -9.58709 -9.51783 -9.30055 -9.05060 -8.84830 -8.75655 -8.31204
-7.54705 -6.97212 -6.73905 -4.30224 1.10029 1.17994 2.54428 3.00054
3.06905 3.09817 3.10948 3.34642 3.41179 3.62008 3.92970 4.15423
4.58121 4.60322 4.62785 4.78589 4.99207 5.01491 5.14058 5.20650
5.24181 5.30646 5.35149 5.43001 5.58545 5.62400 5.69718 5.71666
5.86674 6.15351 6.18424 6.23544 6.29075 6.42520 6.43520 6.55517
6.76865 6.89173 6.97280 7.04532 7.18883 7.28428 7.32172 7.59419
7.72113 7.89135 8.03383 8.28004 8.29332 8.59221 8.76727 8.88322
8.99813 10.18118
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.033384 B = 0.002152 C = 0.002084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.517491 B =13007.499154 C =13433.542774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.066 4.066
3 C -0.119 4.119
4 C -0.124 4.124
5 C -0.116 4.116
6 C -0.119 4.119
7 C -0.121 4.121
8 C 0.097 3.903
9 N -0.624 5.624
10 C 0.049 3.951
11 C 0.495 3.505
12 O -0.515 6.515
13 N -0.651 5.651
14 C -0.005 4.005
15 C -0.115 4.115
16 C -0.152 4.152
17 C 0.105 3.895
18 C -0.458 4.458
19 H 0.078 0.922
20 C 0.074 3.926
21 N -0.794 5.794
22 Si 0.910 3.090
23 H -0.268 1.268
24 H -0.278 1.278
25 H -0.262 1.262
26 C -0.215 4.215
27 C -0.076 4.076
28 H 0.065 0.935
29 H 0.083 0.917
30 H 0.059 0.941
31 H 0.122 0.878
32 H 0.120 0.880
33 H 0.119 0.881
34 H 0.074 0.926
35 H 0.063 0.937
36 H 0.070 0.930
37 H 0.362 0.638
38 H 0.101 0.899
39 H 0.061 0.939
40 H 0.394 0.606
41 H 0.089 0.911
42 H 0.121 0.879
43 H 0.280 0.720
44 H 0.095 0.905
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.017 18.221 1.031 21.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.068 4.068
3 C -0.138 4.138
4 C -0.142 4.142
5 C -0.135 4.135
6 C -0.122 4.122
7 C -0.178 4.178
8 C 0.000 4.000
9 N -0.253 5.253
10 C -0.081 4.081
11 C 0.281 3.719
12 O -0.390 6.390
13 N -0.295 5.295
14 C -0.097 4.097
15 C -0.135 4.135
16 C -0.172 4.172
17 C 0.102 3.898
18 C -0.487 4.487
19 H 0.097 0.903
20 C -0.144 4.144
21 N -0.420 5.420
22 Si 0.734 3.266
23 H -0.193 1.193
24 H -0.203 1.203
25 H -0.186 1.186
26 C -0.235 4.235
27 C -0.096 4.096
28 H 0.084 0.916
29 H 0.102 0.898
30 H 0.078 0.922
31 H 0.140 0.860
32 H 0.138 0.862
33 H 0.137 0.863
34 H 0.092 0.908
35 H 0.082 0.918
36 H 0.089 0.911
37 H 0.185 0.815
38 H 0.119 0.881
39 H 0.079 0.921
40 H 0.227 0.773
41 H 0.108 0.892
42 H 0.139 0.861
43 H 0.091 0.909
44 H 0.113 0.887
45 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 10.265 17.953 1.802 20.759
hybrid contribution 0.749 -0.776 -0.831 1.361
sum 11.013 17.177 0.971 20.428
Atomic orbital electron populations
1.20701 0.90522 1.02956 1.02444 1.19804 0.96531 0.91379 0.99036
1.20980 0.94157 0.97288 1.01379 1.21080 0.94287 0.97820 1.01002
1.20865 0.99505 0.91762 1.01371 1.20483 0.93820 0.95904 1.01972
1.20818 1.00071 0.94123 1.02761 1.18441 0.89460 0.90827 1.01290
1.57299 1.51457 1.04366 1.12199 1.21814 0.99325 0.96638 0.90360
1.20343 0.81826 0.85224 0.84546 1.90716 1.54266 1.64292 1.29746
1.42965 1.46132 1.32209 1.08206 1.17144 0.96435 0.91433 1.04724
1.20211 1.00026 0.94203 0.99059 1.20884 0.98474 0.97317 1.00562
1.17670 0.91548 0.91595 0.88972 1.19565 1.00790 0.94052 1.34304
0.90350 1.25926 0.95698 0.99686 0.93078 1.69842 1.16005 1.23855
1.32264 0.86287 0.81329 0.79120 0.79837 1.19296 1.20349 1.18600
1.20673 1.03051 0.98193 1.01549 1.20273 0.93571 0.98327 0.97469
0.91646 0.89839 0.92209 0.85976 0.86224 0.86305 0.90757 0.91797
0.91060 0.81540 0.88110 0.92086 0.77297 0.89235 0.86147 0.90888
0.88685 0.87833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.13 9.70 36.00 0.35 -0.78 16
2 C -0.07 -0.72 5.90 -104.42 -0.62 -1.33 16
3 C -0.12 -1.11 9.67 -39.61 -0.38 -1.49 16
4 C -0.12 -1.06 10.04 -39.55 -0.40 -1.46 16
5 C -0.12 -1.05 9.70 -39.61 -0.38 -1.43 16
6 C -0.12 -1.20 5.90 -104.42 -0.62 -1.82 16
7 C -0.12 -1.04 9.25 36.01 0.33 -0.71 16
8 C 0.10 1.10 5.24 -83.78 -0.44 0.66 16
9 N -0.62 -7.86 4.77 -59.53 -0.28 -8.14 16
10 C 0.05 0.59 5.79 -4.98 -0.03 0.56 16
11 C 0.50 8.33 7.61 -10.99 -0.08 8.25 16
12 O -0.52 -10.92 13.92 5.55 0.08 -10.84 16
13 N -0.65 -11.15 5.31 -9.74 -0.05 -11.20 16
14 C -0.01 -0.11 6.30 -83.57 -0.53 -0.64 16
15 C -0.11 -2.60 9.89 -39.79 -0.39 -3.00 16
16 C -0.15 -3.91 8.63 -39.26 -0.34 -4.24 16
17 C 0.10 2.81 5.56 -106.80 -0.59 2.22 16
18 C -0.46 -12.16 9.04 -37.85 -0.34 -12.50 16
19 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16
20 C 0.07 1.84 5.15 -17.34 -0.09 1.76 16
21 N -0.79 -20.48 10.96 55.55 0.61 -19.87 16
22 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16
23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16
24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16
25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16
26 C -0.21 -5.48 9.74 -39.26 -0.38 -5.86 16
27 C -0.08 -1.84 8.58 -39.79 -0.34 -2.18 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
29 H 0.08 1.02 7.64 -51.93 -0.40 0.63 16
30 H 0.06 0.51 8.05 -51.93 -0.42 0.10 16
31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16
32 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16
33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
35 H 0.06 0.58 5.80 -51.93 -0.30 0.28 16
36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16
37 H 0.36 4.68 7.16 -39.29 -0.28 4.40 16
38 H 0.10 1.10 8.12 -51.93 -0.42 0.68 16
39 H 0.06 0.63 7.10 -51.93 -0.37 0.26 16
40 H 0.39 5.21 8.81 -40.82 -0.36 4.85 16
41 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16
42 H 0.12 3.15 6.20 -52.49 -0.33 2.83 16
43 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16
44 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16
45 H 0.10 2.47 6.34 -52.49 -0.33 2.13 16
LS Contribution 373.63 15.07 5.63 5.63
Total: -1.00 -30.54 373.63 -10.46 -41.00
By element:
Atomic # 1 Polarization: 19.98 SS G_CDS: -6.13 Total: 13.84 kcal
Atomic # 6 Polarization: -18.73 SS G_CDS: -5.27 Total: -24.00 kcal
Atomic # 7 Polarization: -39.49 SS G_CDS: 0.27 Total: -39.22 kcal
Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal
Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -30.54 -10.46 -41.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000022895074.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.416 kcal
(2) G-P(sol) polarization free energy of solvation -30.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.872 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds