Wall clock time and date at job start Tue Mar 31 2020 14:29:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38107 * 120.03567 * 2 1
4 4 C 1.38285 * 120.07108 * 179.72682 * 3 2 1
5 5 C 1.38289 * 120.15492 * 0.29341 * 4 3 2
6 6 C 1.38103 * 120.06971 * 359.97438 * 5 4 3
7 7 C 1.50707 * 120.03304 * 180.02562 * 6 5 4
8 8 C 1.38903 * 119.92709 * 0.02562 * 6 5 4
9 9 N 1.39682 * 120.07477 * 180.02562 * 8 6 5
10 10 C 1.46898 * 110.99756 * 270.56395 * 9 8 6
11 11 C 1.50703 * 109.47130 * 184.93244 * 10 9 8
12 12 O 1.21285 * 119.99306 * 359.97438 * 11 10 9
13 13 N 1.34769 * 120.00252 * 179.97438 * 11 10 9
14 14 C 1.39238 * 120.00210 * 185.23753 * 13 11 10
15 15 C 1.39480 * 119.83533 * 212.42885 * 14 13 11
16 16 C 1.36376 * 120.16892 * 179.76178 * 15 14 13
17 17 C 1.40864 * 119.82927 * 0.50797 * 16 15 14
18 18 C 1.41150 * 120.16508 * 179.72590 * 17 16 15
19 19 H 1.08003 * 119.99686 * 205.89654 * 18 17 16
20 20 C 1.39902 * 120.00313 * 25.89095 * 18 17 16
21 21 N 1.30870 * 119.99974 * 16.47263 * 20 18 17
22 22 Si 1.86800 * 120.00395 * 196.47289 * 20 18 17
23 23 H 1.48502 * 109.47214 * 89.99811 * 22 20 18
24 24 H 1.48494 * 109.47336 * 210.00304 * 22 20 18
25 25 H 1.48509 * 109.46772 * 330.00196 * 22 20 18
26 26 C 1.40873 * 119.66957 * 359.74186 * 17 16 15
27 27 C 1.36376 * 119.82889 * 0.02562 * 26 17 16
28 28 H 1.09000 * 109.47379 * 95.11004 * 1 2 3
29 29 H 1.09005 * 109.47263 * 215.10326 * 1 2 3
30 30 H 1.08998 * 109.47436 * 335.10677 * 1 2 3
31 31 H 1.07996 * 119.96131 * 0.02562 * 3 2 1
32 32 H 1.08007 * 119.92296 * 180.27545 * 4 3 2
33 33 H 1.07996 * 119.96011 * 180.02562 * 5 4 3
34 34 H 1.09005 * 109.46813 * 90.00204 * 7 6 5
35 35 H 1.08996 * 109.46962 * 209.99495 * 7 6 5
36 36 H 1.08996 * 109.47291 * 330.00432 * 7 6 5
37 37 H 1.00897 * 110.99557 * 34.51716 * 9 8 6
38 38 H 1.08998 * 109.46864 * 304.93110 * 10 9 8
39 39 H 1.08994 * 109.47578 * 64.93388 * 10 9 8
40 40 H 0.96998 * 119.99821 * 5.24280 * 13 11 10
41 41 H 1.08008 * 119.91388 * 0.02562 * 15 14 13
42 42 H 1.07998 * 120.08432 * 180.25220 * 16 15 14
43 43 H 0.97001 * 120.00056 * 180.02562 * 21 20 18
44 44 H 1.08002 * 120.08144 * 179.97438 * 26 17 16
45 45 H 1.07996 * 119.91289 * 179.97438 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1982 1.1956 0.0000
4 6 3.5810 1.1965 0.0057
5 6 4.2765 0.0012 0.0053
6 6 3.5914 -1.1980 -0.0003
7 6 4.3501 -2.5001 -0.0001
8 6 2.2024 -1.2025 -0.0060
9 7 1.5064 -2.4136 -0.0111
10 6 1.2615 -2.8741 -1.3843
11 6 0.4069 -4.1150 -1.3531
12 8 0.0386 -4.5710 -0.2913
13 7 0.0519 -4.7180 -2.5049
14 6 -0.8258 -5.7987 -2.4834
15 6 -0.7000 -6.8139 -3.4315
16 6 -1.5528 -7.8779 -3.4137
17 6 -2.5696 -7.9447 -2.4410
18 6 -3.4598 -9.0398 -2.4196
19 1 -4.4472 -8.9249 -1.9973
20 6 -3.0633 -10.2741 -2.9455
21 7 -1.7952 -10.5177 -3.1583
22 14 -4.3438 -11.5745 -3.3440
23 1 -4.8020 -11.4047 -4.7463
24 1 -3.7471 -12.9241 -3.1781
25 1 -5.5006 -11.4282 -2.4242
26 6 -2.6936 -6.9129 -1.4899
27 6 -1.8303 -5.8576 -1.5175
28 1 -0.3634 -0.0915 -1.0236
29 1 -0.3634 -0.8408 0.5910
30 1 -0.3634 0.9322 0.4326
31 1 1.6582 2.1309 0.0004
32 1 4.1192 2.1329 0.0102
33 1 5.3564 0.0055 0.0102
34 1 4.5288 -2.8164 1.0276
35 1 3.7662 -3.2609 -0.5180
36 1 5.3041 -2.3649 -0.5096
37 1 1.9970 -3.1147 0.5234
38 1 0.7469 -2.0926 -1.9433
39 1 2.2123 -3.1000 -1.8669
40 1 0.4079 -4.3991 -3.3490
41 1 0.0777 -6.7593 -4.1791
42 1 -1.4516 -8.6652 -4.1459
43 1 -1.5203 -11.3734 -3.5233
44 1 -3.4710 -6.9571 -0.7415
45 1 -1.9244 -5.0656 -0.7893
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000022895074.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:29:10
Heat of formation + Delta-G solvation = -7.054054 kcal
Electronic energy + Delta-G solvation = -25892.240660 eV
Core-core repulsion = 22259.130532 eV
Total energy + Delta-G solvation = -3633.110128 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.42278 -40.66798 -39.05608 -36.58153 -36.03506 -34.73993 -34.44801 -31.84306
-31.46879 -30.83100 -28.95401 -27.53224 -27.17750 -25.96531 -23.44934 -22.62181
-22.06302 -21.63544 -21.16663 -19.30448 -18.67051 -18.16188 -17.56910 -17.12418
-16.82205 -16.29066 -16.00780 -15.78798 -15.70167 -15.03292 -14.75784 -14.63899
-14.55801 -14.22880 -14.10253 -13.97911 -13.81047 -13.70086 -13.54658 -13.43398
-13.19848 -12.82000 -12.77403 -12.73044 -12.48252 -12.44333 -12.09450 -11.96935
-11.76645 -11.43155 -11.17664 -10.85443 -10.66382 -10.07669 -9.47492 -9.46193
-9.11619 -8.83906 -8.59737 -6.27839 0.37337 0.46570 0.79594 1.13403
1.39073 1.44862 1.52564 1.82556 2.19952 2.23068 2.74471 2.79520
3.16733 3.70587 3.80682 3.89200 3.93429 4.14714 4.20863 4.26939
4.39053 4.40964 4.50876 4.52002 4.62368 4.67475 4.70853 4.83911
4.92304 4.92998 4.97865 5.11055 5.15271 5.18464 5.31072 5.38215
5.44146 5.52936 5.58558 5.65541 5.68197 5.77955 5.90136 6.03106
6.10195 6.11668 6.37303 6.46739 6.64772 6.76038 6.92910 6.99005
7.42251 8.33640
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.033384 B = 0.002152 C = 0.002084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.517491 B =13007.499154 C =13433.542774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.083 4.083
3 C -0.124 4.124
4 C -0.122 4.122
5 C -0.121 4.121
6 C -0.127 4.127
7 C -0.119 4.119
8 C 0.077 3.923
9 N -0.636 5.636
10 C 0.065 3.935
11 C 0.497 3.503
12 O -0.561 6.561
13 N -0.644 5.644
14 C 0.013 3.987
15 C -0.113 4.113
16 C -0.170 4.170
17 C 0.073 3.927
18 C -0.496 4.496
19 H 0.073 0.927
20 C 0.034 3.966
21 N -0.825 5.825
22 Si 0.985 3.015
23 H -0.259 1.259
24 H -0.268 1.268
25 H -0.261 1.261
26 C -0.233 4.233
27 C -0.088 4.088
28 H 0.067 0.933
29 H 0.057 0.943
30 H 0.074 0.926
31 H 0.141 0.859
32 H 0.145 0.855
33 H 0.139 0.861
34 H 0.074 0.926
35 H 0.056 0.944
36 H 0.086 0.914
37 H 0.356 0.644
38 H 0.118 0.882
39 H 0.089 0.911
40 H 0.417 0.583
41 H 0.125 0.875
42 H 0.110 0.890
43 H 0.289 0.711
44 H 0.092 0.908
45 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.806 19.902 -0.018 23.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.084 4.084
3 C -0.142 4.142
4 C -0.140 4.140
5 C -0.139 4.139
6 C -0.129 4.129
7 C -0.176 4.176
8 C -0.019 4.019
9 N -0.265 5.265
10 C -0.065 4.065
11 C 0.285 3.715
12 O -0.438 6.438
13 N -0.290 5.290
14 C -0.081 4.081
15 C -0.133 4.133
16 C -0.190 4.190
17 C 0.071 3.929
18 C -0.525 4.525
19 H 0.091 0.909
20 C -0.181 4.181
21 N -0.451 5.451
22 Si 0.806 3.194
23 H -0.183 1.183
24 H -0.192 1.192
25 H -0.185 1.185
26 C -0.254 4.254
27 C -0.108 4.108
28 H 0.086 0.914
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.159 0.841
32 H 0.163 0.837
33 H 0.157 0.843
34 H 0.093 0.907
35 H 0.075 0.925
36 H 0.105 0.895
37 H 0.178 0.822
38 H 0.136 0.864
39 H 0.106 0.894
40 H 0.254 0.746
41 H 0.143 0.857
42 H 0.128 0.872
43 H 0.100 0.900
44 H 0.110 0.890
45 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 12.085 19.684 0.728 23.109
hybrid contribution 0.330 -1.103 -0.438 1.232
sum 12.416 18.581 0.290 22.349
Atomic orbital electron populations
1.20640 0.90723 1.02641 1.02199 1.19968 0.96647 0.91951 0.99862
1.21238 0.94748 0.97424 1.00791 1.21433 0.94179 0.98838 0.99569
1.21175 1.00676 0.91468 1.00627 1.20655 0.93431 0.96969 1.01864
1.20826 1.00502 0.93317 1.02952 1.18527 0.90137 0.90263 1.03006
1.57262 1.52183 1.04811 1.12255 1.21734 0.99500 0.94292 0.90999
1.21195 0.81090 0.85786 0.83408 1.90704 1.55964 1.65696 1.31470
1.42886 1.45315 1.30944 1.09840 1.17196 0.95810 0.92179 1.02904
1.20486 0.99972 0.93132 0.99702 1.20905 0.99344 0.98283 1.00494
1.17989 0.92691 0.92334 0.89909 1.19775 1.00913 0.95302 1.36552
0.90853 1.26762 0.97793 1.01344 0.92189 1.69879 1.17656 1.24948
1.32657 0.85162 0.78284 0.76258 0.79734 1.18336 1.19242 1.18536
1.20796 1.03802 0.98963 1.01799 1.20364 0.94172 0.98008 0.98253
0.91435 0.92375 0.90704 0.84137 0.83696 0.84271 0.90689 0.92550
0.89475 0.82186 0.86374 0.89376 0.74579 0.85715 0.87190 0.90040
0.88969 0.87997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.09 9.70 71.23 0.69 -1.40 16
2 C -0.08 -1.67 5.90 -19.74 -0.12 -1.79 16
3 C -0.12 -1.98 9.67 22.25 0.22 -1.77 16
4 C -0.12 -1.72 10.04 22.29 0.22 -1.49 16
5 C -0.12 -1.83 9.70 22.25 0.22 -1.62 16
6 C -0.13 -2.30 5.90 -19.73 -0.12 -2.42 16
7 C -0.12 -1.83 9.25 71.24 0.66 -1.17 16
8 C 0.08 1.65 5.24 38.21 0.20 1.85 16
9 N -0.64 -15.56 4.77 -342.25 -1.63 -17.19 16
10 C 0.06 1.45 5.79 85.56 0.50 1.94 16
11 C 0.50 16.22 7.61 87.66 0.67 16.89 16
12 O -0.56 -23.97 13.92 -3.04 -0.04 -24.01 16
13 N -0.64 -20.94 5.31 -303.12 -1.61 -22.55 16
14 C 0.01 0.55 6.30 38.56 0.24 0.80 16
15 C -0.11 -5.05 9.89 22.13 0.22 -4.83 16
16 C -0.17 -8.91 8.63 22.48 0.19 -8.71 16
17 C 0.07 4.09 5.56 -21.28 -0.12 3.97 16
18 C -0.50 -27.44 9.04 23.39 0.21 -27.22 16
19 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16
20 C 0.03 1.72 5.15 85.24 0.44 2.16 16
21 N -0.83 -43.35 10.96 21.82 0.24 -43.11 16
22 Si 0.98 38.57 29.59 68.60 2.03 40.60 16
23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16
24 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16
25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16
26 C -0.23 -12.46 9.74 22.48 0.22 -12.24 16
27 C -0.09 -4.32 8.58 22.13 0.19 -4.13 16
28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
29 H 0.06 1.44 7.64 -2.38 -0.02 1.42 16
30 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16
31 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16
32 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16
33 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16
34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16
35 H 0.06 0.94 5.80 -2.39 -0.01 0.92 16
36 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16
37 H 0.36 9.16 7.16 -89.70 -0.64 8.52 16
38 H 0.12 2.29 8.12 -2.39 -0.02 2.27 16
39 H 0.09 1.54 7.10 -2.39 -0.02 1.53 16
40 H 0.42 9.81 8.81 -92.71 -0.82 8.99 16
41 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16
42 H 0.11 5.91 6.20 -2.91 -0.02 5.90 16
43 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16
44 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16
45 H 0.10 5.00 6.34 -2.91 -0.02 4.98 16
Total: -1.00 -68.83 373.63 3.28 -65.54
By element:
Atomic # 1 Polarization: 42.34 SS G_CDS: -0.43 Total: 41.91 kcal
Atomic # 6 Polarization: -45.91 SS G_CDS: 4.73 Total: -41.18 kcal
Atomic # 7 Polarization: -79.85 SS G_CDS: -3.00 Total: -82.86 kcal
Atomic # 8 Polarization: -23.97 SS G_CDS: -0.04 Total: -24.01 kcal
Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal
Total: -68.83 3.28 -65.54 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000022895074.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.487 kcal
(2) G-P(sol) polarization free energy of solvation -68.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.054 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds