Wall clock time and date at job start Tue Mar 31 2020 14:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38146 * 120.03660 * 2 1 4 4 C 1.38249 * 120.07108 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.13990 * 0.02562 * 4 3 2 6 6 C 1.38086 * 120.07265 * 359.74888 * 5 4 3 7 7 C 1.38844 * 120.03644 * 179.97438 * 2 1 3 8 8 N 1.39945 * 120.06971 * 0.02562 * 7 2 1 9 9 C 1.34770 * 120.00146 * 155.45716 * 8 7 2 10 10 O 1.21592 * 120.00073 * 354.34256 * 9 8 7 11 11 N 1.34775 * 120.00341 * 174.06904 * 9 8 7 12 12 C 1.46504 * 119.99778 * 0.27040 * 11 9 8 13 13 C 1.50706 * 109.46895 * 90.00218 * 12 11 9 14 14 H 1.07999 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99791 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00463 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99815 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.46864 * 90.00181 * 17 15 13 19 19 H 1.48496 * 109.46866 * 210.00141 * 17 15 13 20 20 H 1.48504 * 109.46768 * 329.99873 * 17 15 13 21 21 C 1.46498 * 120.00570 * 180.27487 * 11 9 8 22 22 C 1.50702 * 109.46959 * 89.99720 * 21 11 9 23 23 C 1.38235 * 119.99930 * 269.72525 * 22 21 11 24 24 C 1.38231 * 119.99914 * 179.77026 * 23 22 21 25 25 C 1.38241 * 119.99964 * 0.50505 * 24 23 22 26 26 C 1.38236 * 119.99748 * 359.75593 * 25 24 23 27 27 C 1.38230 * 120.00124 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47786 * 270.02665 * 1 2 3 29 29 H 1.09006 * 109.47365 * 30.02506 * 1 2 3 30 30 H 1.09000 * 109.47423 * 150.02191 * 1 2 3 31 31 H 1.08002 * 119.96153 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.93306 * 180.02562 * 4 3 2 33 33 H 1.08005 * 119.96121 * 179.97438 * 5 4 3 34 34 H 1.07991 * 120.03978 * 180.25301 * 6 5 4 35 35 H 0.97001 * 119.99706 * 335.45301 * 8 7 2 36 36 H 1.08997 * 109.47345 * 210.00305 * 12 11 9 37 37 H 1.09001 * 109.47300 * 330.00209 * 12 11 9 38 38 H 0.96996 * 120.00627 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47531 * 209.99968 * 21 11 9 40 40 H 1.08999 * 109.46837 * 329.99818 * 21 11 9 41 41 H 1.08002 * 119.99977 * 0.02562 * 23 22 21 42 42 H 1.07997 * 120.00580 * 180.23366 * 24 23 22 43 43 H 1.07995 * 120.00231 * 179.72002 * 25 24 23 44 44 H 1.08005 * 119.99563 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00280 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2761 0.0011 0.0005 6 6 3.5908 -1.1977 0.0052 7 6 2.2019 -1.2020 0.0005 8 7 1.5044 -2.4152 0.0005 9 6 2.0892 -3.5287 -0.4838 10 8 3.1812 -3.4604 -1.0141 11 7 1.4660 -4.7188 -0.3754 12 6 0.1503 -4.8012 0.2637 13 6 -0.9254 -4.6171 -0.7757 14 1 -0.6559 -4.4546 -1.8088 15 6 -2.2535 -4.6552 -0.4074 16 7 -2.5817 -4.8516 0.8508 17 14 -3.5868 -4.4263 -1.6957 18 1 -3.9622 -5.7477 -2.2595 19 1 -4.7780 -3.7990 -1.0690 20 1 -3.0799 -3.5501 -2.7823 21 6 2.1043 -5.9301 -0.8964 22 6 2.9477 -6.5577 0.1834 23 6 4.2763 -6.2006 0.3178 24 6 5.0486 -6.7727 1.3113 25 6 4.4951 -7.7098 2.1637 26 6 3.1678 -8.0708 2.0258 27 6 2.3941 -7.4946 1.0359 28 1 -0.3635 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6584 2.1312 -0.0004 32 1 4.1193 2.1331 0.0010 33 1 5.3561 0.0051 0.0005 34 1 4.1342 -2.1310 0.0094 35 1 0.6001 -2.4547 0.3492 36 1 0.0361 -5.7769 0.7359 37 1 0.0635 -4.0198 1.0187 38 1 -3.5160 -4.8780 1.1100 39 1 1.3378 -6.6364 -1.2153 40 1 2.7358 -5.6711 -1.7463 41 1 4.7099 -5.4715 -0.3507 42 1 6.0856 -6.4910 1.4188 43 1 5.0996 -8.1601 2.9370 44 1 2.7355 -8.8032 2.6915 45 1 1.3573 -7.7769 0.9278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033873392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:30 Heat of formation + Delta-G solvation = 23.507294 kcal Electronic energy + Delta-G solvation = -27312.301543 eV Core-core repulsion = 23680.516655 eV Total energy + Delta-G solvation = -3631.784889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35528 -39.05951 -38.17929 -35.25567 -34.38675 -32.84561 -32.21089 -31.27507 -30.59052 -29.12410 -27.51970 -26.59007 -25.47048 -23.24420 -22.49314 -22.14178 -21.25270 -20.75577 -19.20539 -17.72464 -16.93328 -16.71062 -16.24762 -15.59434 -15.13777 -14.91782 -14.89371 -14.62081 -14.58980 -13.98998 -13.59080 -13.54233 -13.15528 -13.07061 -12.89773 -12.68155 -12.42834 -12.25395 -12.13245 -11.77993 -11.68179 -11.44533 -11.11706 -11.11346 -10.93526 -10.89770 -10.81513 -10.59382 -10.27828 -10.01511 -9.84883 -9.33365 -8.68569 -8.61731 -8.49392 -8.38918 -7.93881 -7.42668 -6.28285 -4.37707 1.58020 1.67148 1.70489 1.76277 3.16544 3.24563 3.26526 3.33242 3.69536 4.09968 4.21862 4.27622 4.68231 5.04335 5.12310 5.15556 5.16232 5.17582 5.27082 5.39842 5.45251 5.53870 5.65960 5.75191 5.81583 5.90742 5.92539 5.96538 6.06452 6.18739 6.26965 6.32509 6.36614 6.44384 6.59041 6.66038 6.74279 6.76568 6.79726 6.87432 6.98498 6.99163 7.03012 7.29472 7.31771 7.49806 7.66631 7.70108 7.92633 8.47305 8.74205 9.16582 9.32548 10.77512 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.006990 B = 0.006196 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4004.672330 B = 4518.017508 C = 7914.259282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.153 4.153 5 C -0.108 4.108 6 C -0.134 4.134 7 C 0.185 3.815 8 N -0.678 5.678 9 C 0.709 3.291 10 O -0.600 6.600 11 N -0.603 5.603 12 C 0.238 3.762 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.174 3.826 22 C -0.096 4.096 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.101 4.101 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.419 0.581 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.713 2.696 1.829 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.129 4.129 3 C -0.120 4.120 4 C -0.173 4.173 5 C -0.126 4.126 6 C -0.154 4.154 7 C 0.088 3.912 8 N -0.325 5.325 9 C 0.412 3.588 10 O -0.481 6.481 11 N -0.335 5.335 12 C 0.118 3.882 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.050 3.950 22 C -0.098 4.098 23 C -0.115 4.115 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.165 0.835 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.230 2.590 1.586 10.671 hybrid contribution -1.430 0.060 -0.338 1.470 sum 8.800 2.650 1.248 9.275 Atomic orbital electron populations 1.20742 0.90971 1.03275 1.02387 1.19623 0.96123 0.91750 1.05382 1.20719 0.94062 0.96521 1.00691 1.20950 0.94165 0.97722 1.04414 1.20965 0.99417 0.92120 1.00147 1.21473 0.92686 0.99710 1.01572 1.17535 0.91369 0.84390 0.97945 1.42954 1.19438 1.06025 1.64035 1.15793 0.83557 0.80677 0.78773 1.90756 1.21130 1.85640 1.50569 1.47404 1.21030 1.04017 1.61059 1.19382 0.77156 0.98715 0.92914 1.21532 0.90615 1.51110 0.95035 0.91899 1.24942 0.98636 0.94561 0.95471 1.69919 1.18430 1.48453 1.15810 0.86517 0.81059 0.78593 0.81501 1.20426 1.21002 1.19718 1.20114 0.95499 0.85954 0.93445 1.20443 0.94482 0.96553 0.98294 1.21228 0.93718 0.98602 0.97971 1.21102 0.99672 0.97814 0.96241 1.21079 0.95492 0.98407 0.99399 1.21094 0.94264 1.00576 0.98646 1.21186 0.99813 0.96204 0.94711 0.91290 0.91565 0.90891 0.86314 0.86746 0.86468 0.83529 0.74066 0.94044 0.95277 0.92380 0.89371 0.89884 0.85525 0.86622 0.86726 0.86446 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.45 36.00 0.34 -1.37 16 2 C -0.13 -2.01 5.90 -104.44 -0.62 -2.62 16 3 C -0.10 -1.41 9.70 -39.61 -0.38 -1.79 16 4 C -0.15 -2.05 10.04 -39.55 -0.40 -2.45 16 5 C -0.11 -1.58 10.04 -39.61 -0.40 -1.97 16 6 C -0.13 -2.34 8.72 -39.39 -0.34 -2.69 16 7 C 0.19 3.36 6.41 -83.69 -0.54 2.83 16 8 N -0.68 -13.28 4.81 -14.22 -0.07 -13.35 16 9 C 0.71 14.84 8.08 -86.93 -0.70 14.14 16 10 O -0.60 -13.00 12.63 5.28 0.07 -12.93 16 11 N -0.60 -12.34 2.44 -182.18 -0.44 -12.78 16 12 C 0.24 5.41 4.88 -5.19 -0.03 5.38 16 13 C -0.54 -13.46 9.39 -34.44 -0.32 -13.78 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.35 13.29 55.43 0.74 -22.62 16 17 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.17 3.14 5.53 -5.19 -0.03 3.11 16 22 C -0.10 -1.61 5.46 -104.62 -0.57 -2.19 16 23 C -0.10 -1.54 9.70 -39.59 -0.38 -1.93 16 24 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 25 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 26 C -0.13 -1.79 10.05 -39.59 -0.40 -2.18 16 27 C -0.10 -1.59 9.70 -39.59 -0.38 -1.97 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.07 1.21 6.98 -51.93 -0.36 0.85 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.15 2.78 5.79 -52.49 -0.30 2.48 16 35 H 0.42 8.31 5.21 -40.82 -0.21 8.10 16 36 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.03 0.69 6.45 -51.93 -0.33 0.36 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.09 1.55 8.02 -51.93 -0.42 1.13 16 40 H 0.08 1.49 7.36 -51.93 -0.38 1.11 16 41 H 0.13 2.09 7.60 -52.49 -0.40 1.69 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -27.68 376.85 -11.27 -38.95 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.18 Total: 14.38 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -6.04 Total: -12.16 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.22 Total: -48.75 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.68 -11.27 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033873392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.457 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds