Wall clock time and date at job start Tue Mar 31 2020 14:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38146 * 120.03660 * 2 1 4 4 C 1.38249 * 120.07108 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.13990 * 0.02562 * 4 3 2 6 6 C 1.38086 * 120.07265 * 359.74888 * 5 4 3 7 7 C 1.38844 * 120.03644 * 179.97438 * 2 1 3 8 8 N 1.39945 * 120.06971 * 0.02562 * 7 2 1 9 9 C 1.34770 * 120.00146 * 155.45716 * 8 7 2 10 10 O 1.21592 * 120.00073 * 354.34256 * 9 8 7 11 11 N 1.34775 * 120.00341 * 174.06904 * 9 8 7 12 12 C 1.46504 * 119.99778 * 0.27040 * 11 9 8 13 13 C 1.50706 * 109.46895 * 90.00218 * 12 11 9 14 14 H 1.07999 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99791 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00463 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99815 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.46864 * 90.00181 * 17 15 13 19 19 H 1.48496 * 109.46866 * 210.00141 * 17 15 13 20 20 H 1.48504 * 109.46768 * 329.99873 * 17 15 13 21 21 C 1.46498 * 120.00570 * 180.27487 * 11 9 8 22 22 C 1.50702 * 109.46959 * 89.99720 * 21 11 9 23 23 C 1.38235 * 119.99930 * 269.72525 * 22 21 11 24 24 C 1.38231 * 119.99914 * 179.77026 * 23 22 21 25 25 C 1.38241 * 119.99964 * 0.50505 * 24 23 22 26 26 C 1.38236 * 119.99748 * 359.75593 * 25 24 23 27 27 C 1.38230 * 120.00124 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47786 * 270.02665 * 1 2 3 29 29 H 1.09006 * 109.47365 * 30.02506 * 1 2 3 30 30 H 1.09000 * 109.47423 * 150.02191 * 1 2 3 31 31 H 1.08002 * 119.96153 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.93306 * 180.02562 * 4 3 2 33 33 H 1.08005 * 119.96121 * 179.97438 * 5 4 3 34 34 H 1.07991 * 120.03978 * 180.25301 * 6 5 4 35 35 H 0.97001 * 119.99706 * 335.45301 * 8 7 2 36 36 H 1.08997 * 109.47345 * 210.00305 * 12 11 9 37 37 H 1.09001 * 109.47300 * 330.00209 * 12 11 9 38 38 H 0.96996 * 120.00627 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47531 * 209.99968 * 21 11 9 40 40 H 1.08999 * 109.46837 * 329.99818 * 21 11 9 41 41 H 1.08002 * 119.99977 * 0.02562 * 23 22 21 42 42 H 1.07997 * 120.00580 * 180.23366 * 24 23 22 43 43 H 1.07995 * 120.00231 * 179.72002 * 25 24 23 44 44 H 1.08005 * 119.99563 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00280 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2761 0.0011 0.0005 6 6 3.5908 -1.1977 0.0052 7 6 2.2019 -1.2020 0.0005 8 7 1.5044 -2.4152 0.0005 9 6 2.0892 -3.5287 -0.4838 10 8 3.1812 -3.4604 -1.0141 11 7 1.4660 -4.7188 -0.3754 12 6 0.1503 -4.8012 0.2637 13 6 -0.9254 -4.6171 -0.7757 14 1 -0.6559 -4.4546 -1.8088 15 6 -2.2535 -4.6552 -0.4074 16 7 -2.5817 -4.8516 0.8508 17 14 -3.5868 -4.4263 -1.6957 18 1 -3.9622 -5.7477 -2.2595 19 1 -4.7780 -3.7990 -1.0690 20 1 -3.0799 -3.5501 -2.7823 21 6 2.1043 -5.9301 -0.8964 22 6 2.9477 -6.5577 0.1834 23 6 4.2763 -6.2006 0.3178 24 6 5.0486 -6.7727 1.3113 25 6 4.4951 -7.7098 2.1637 26 6 3.1678 -8.0708 2.0258 27 6 2.3941 -7.4946 1.0359 28 1 -0.3635 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6584 2.1312 -0.0004 32 1 4.1193 2.1331 0.0010 33 1 5.3561 0.0051 0.0005 34 1 4.1342 -2.1310 0.0094 35 1 0.6001 -2.4547 0.3492 36 1 0.0361 -5.7769 0.7359 37 1 0.0635 -4.0198 1.0187 38 1 -3.5160 -4.8780 1.1100 39 1 1.3378 -6.6364 -1.2153 40 1 2.7358 -5.6711 -1.7463 41 1 4.7099 -5.4715 -0.3507 42 1 6.0856 -6.4910 1.4188 43 1 5.0996 -8.1601 2.9370 44 1 2.7355 -8.8032 2.6915 45 1 1.3573 -7.7769 0.9278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033873392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:29 Heat of formation + Delta-G solvation = 12.546929 kcal Electronic energy + Delta-G solvation = -27312.776820 eV Core-core repulsion = 23680.516655 eV Total energy + Delta-G solvation = -3632.260166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83975 -40.29028 -39.48240 -36.89120 -35.81955 -34.69525 -33.45105 -32.62055 -31.75814 -30.40629 -29.31559 -27.80528 -26.88742 -25.05527 -23.79524 -23.36342 -22.48055 -21.98321 -20.71947 -19.20688 -18.73686 -18.19558 -17.63069 -16.86992 -16.60901 -16.50023 -16.26797 -16.03528 -15.86949 -15.35361 -14.95761 -14.77927 -14.61702 -14.34452 -14.25071 -14.03084 -13.93336 -13.59734 -13.44207 -13.21438 -13.09418 -12.98102 -12.78121 -12.62340 -12.29615 -12.17733 -12.16675 -12.05286 -11.80809 -11.71543 -11.39918 -10.90529 -10.63212 -9.79547 -9.74122 -9.59134 -9.55198 -8.80362 -8.23505 -6.40010 0.37500 0.46518 0.52666 0.55161 1.39085 1.42175 1.50952 1.82949 2.15030 2.37925 2.86047 2.98539 3.05818 3.14076 3.91952 3.93520 3.98344 4.02498 4.18209 4.28415 4.31188 4.33394 4.45387 4.59046 4.60803 4.66433 4.74934 4.77081 4.77349 4.81636 4.86872 5.07852 5.10140 5.12155 5.18264 5.26076 5.39106 5.54383 5.59072 5.61278 5.62032 5.69167 5.70190 5.74312 5.81531 5.98436 6.10979 6.14265 6.23822 6.63907 6.94228 7.32494 7.56397 8.80932 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.006990 B = 0.006196 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4004.672330 B = 4518.017508 C = 7914.259282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.134 4.134 3 C -0.098 4.098 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.155 4.155 7 C 0.148 3.852 8 N -0.679 5.679 9 C 0.703 3.297 10 O -0.613 6.613 11 N -0.605 5.605 12 C 0.257 3.743 13 C -0.550 4.550 14 H 0.050 0.950 15 C 0.029 3.971 16 N -0.914 5.914 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.174 3.826 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.414 0.586 36 H 0.028 0.972 37 H 0.017 0.983 38 H 0.269 0.731 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 4.125 2.464 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.137 4.137 3 C -0.116 4.116 4 C -0.160 4.160 5 C -0.127 4.127 6 C -0.175 4.175 7 C 0.052 3.948 8 N -0.325 5.325 9 C 0.405 3.595 10 O -0.495 6.495 11 N -0.337 5.337 12 C 0.136 3.864 13 C -0.588 4.588 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.552 5.552 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.203 1.203 20 H -0.199 1.199 21 C 0.051 3.949 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.135 4.135 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.253 0.747 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.131 0.869 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.063 4.031 2.216 11.981 hybrid contribution -1.582 -0.320 -0.502 1.691 sum 9.481 3.711 1.715 10.325 Atomic orbital electron populations 1.20729 0.90408 1.03107 1.02777 1.19883 0.96765 0.91791 1.05300 1.21151 0.94630 0.96828 0.99020 1.21405 0.94170 0.98611 1.01814 1.21273 1.00747 0.91543 0.99188 1.21414 0.92607 1.00139 1.03385 1.17893 0.91919 0.84510 1.00449 1.42930 1.19187 1.06453 1.63965 1.15956 0.83576 0.81031 0.78937 1.90735 1.21571 1.85884 1.51289 1.47399 1.20419 1.04833 1.61095 1.18995 0.77892 0.97286 0.92224 1.21625 0.91462 1.51034 0.94709 0.93156 1.25576 1.00351 0.94214 0.97064 1.69998 1.18947 1.49129 1.17175 0.85610 0.78717 0.78465 0.79224 1.20045 1.20337 1.19916 1.20150 0.95475 0.85188 0.94051 1.20311 0.94814 0.97612 0.98661 1.21212 0.93718 0.99099 0.98970 1.21418 1.00698 0.97362 0.95284 1.21491 0.95368 0.97391 0.99428 1.21424 0.94632 1.00477 0.98026 1.21243 0.99921 0.96712 0.95620 0.90636 0.89052 0.93608 0.82937 0.82876 0.84079 0.85942 0.74661 0.95399 0.96524 0.92152 0.89557 0.90429 0.86888 0.84090 0.83150 0.83915 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.27 9.45 71.23 0.67 -2.60 16 2 C -0.13 -4.20 5.90 -19.74 -0.12 -4.32 16 3 C -0.10 -2.43 9.70 22.25 0.22 -2.21 16 4 C -0.14 -3.29 10.04 22.29 0.22 -3.07 16 5 C -0.11 -3.02 10.04 22.25 0.22 -2.79 16 6 C -0.15 -5.54 8.72 22.39 0.20 -5.35 16 7 C 0.15 5.54 6.41 38.15 0.24 5.79 16 8 N -0.68 -28.18 4.81 -317.18 -1.53 -29.71 16 9 C 0.70 31.25 8.08 179.06 1.45 32.70 16 10 O -0.61 -28.20 12.63 -4.01 -0.05 -28.25 16 11 N -0.60 -26.38 2.44 -848.56 -2.07 -28.45 16 12 C 0.26 12.31 4.88 85.63 0.42 12.72 16 13 C -0.55 -28.21 9.39 25.60 0.24 -27.97 16 14 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 15 C 0.03 1.50 5.46 84.65 0.46 1.96 16 16 N -0.91 -48.86 13.29 21.45 0.28 -48.57 16 17 Si 0.95 41.13 29.54 68.60 2.03 43.16 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 C 0.17 6.75 5.53 85.63 0.47 7.23 16 22 C -0.11 -3.96 5.46 -19.87 -0.11 -4.07 16 23 C -0.11 -3.67 9.70 22.27 0.22 -3.45 16 24 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 25 C -0.12 -2.87 10.05 22.27 0.22 -2.64 16 26 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 27 C -0.12 -3.77 9.70 22.27 0.22 -3.55 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 2.11 8.09 -2.38 -0.02 2.09 16 30 H 0.04 1.56 6.98 -2.39 -0.02 1.54 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.12 4.93 5.79 -2.92 -0.02 4.91 16 35 H 0.41 17.54 5.21 -92.71 -0.48 17.06 16 36 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 37 H 0.02 0.85 6.45 -2.39 -0.02 0.83 16 38 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 39 H 0.09 3.27 8.02 -2.39 -0.02 3.25 16 40 H 0.08 3.02 7.36 -2.39 -0.02 3.00 16 41 H 0.11 3.96 7.60 -2.91 -0.02 3.94 16 42 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 45 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -61.62 376.85 4.88 -56.74 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: 0.52 Total: 43.13 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.70 Total: -8.06 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.31 Total: -106.73 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -61.62 4.88 -56.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033873392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.291 kcal (2) G-P(sol) polarization free energy of solvation -61.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds