Wall clock time and date at job start Tue Mar 31 2020 14:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99792 * 2 1 4 4 C 1.38239 * 119.99569 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00267 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00031 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46895 * 90.00126 * 6 5 4 8 8 O 1.21284 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00222 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99626 * 359.97438 * 9 7 6 11 11 C 1.50699 * 109.47198 * 269.99560 * 10 9 7 12 12 H 1.08001 * 119.99641 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99899 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99984 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00252 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46948 * 89.99779 * 15 13 11 17 17 H 1.48494 * 109.47619 * 209.99825 * 15 13 11 18 18 H 1.48503 * 109.47112 * 330.00458 * 15 13 11 19 19 C 1.46503 * 120.00342 * 179.97438 * 9 7 6 20 20 C 1.50695 * 109.47313 * 270.00350 * 19 9 7 21 21 C 1.38678 * 120.41675 * 270.25293 * 20 19 9 22 22 C 1.38627 * 118.41930 * 180.24221 * 21 20 19 23 23 C 1.38232 * 119.16085 * 359.75178 * 22 21 20 24 24 N 1.31857 * 120.76541 * 359.97438 * 23 22 21 25 25 C 1.31889 * 121.72235 * 0.02562 * 24 23 22 26 26 C 1.38240 * 119.99877 * 0.25414 * 5 4 3 27 27 C 1.38233 * 119.99858 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47294 * 89.99854 * 1 2 3 29 29 H 1.08997 * 109.47042 * 209.99977 * 1 2 3 30 30 H 1.09001 * 109.46840 * 329.99638 * 1 2 3 31 31 H 1.08000 * 120.00058 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99730 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47435 * 330.00408 * 6 5 4 34 34 H 1.09002 * 109.47037 * 209.99785 * 6 5 4 35 35 H 1.09000 * 109.46928 * 30.00295 * 10 9 7 36 36 H 1.09006 * 109.46774 * 149.99687 * 10 9 7 37 37 H 0.97003 * 120.00146 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46632 * 150.00159 * 19 9 7 39 39 H 1.08996 * 109.46728 * 30.00153 * 19 9 7 40 40 H 1.07994 * 120.78944 * 359.96926 * 21 20 19 41 41 H 1.07997 * 120.42083 * 179.72800 * 22 21 20 42 42 H 1.07999 * 119.61954 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.61237 * 179.97438 * 25 24 23 44 44 H 1.07992 * 119.99740 * 179.72864 * 26 5 4 45 45 H 1.08000 * 119.99959 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2810 0.0000 1.4214 8 8 5.4928 0.0004 2.3432 9 7 7.6060 -0.0005 1.6677 10 6 8.5581 -0.0017 0.5542 11 6 8.8839 -1.4228 0.1733 12 1 8.4271 -2.2432 0.7070 13 6 9.7642 -1.6757 -0.8572 14 7 10.0482 -2.9160 -1.1900 15 14 10.5537 -0.2569 -1.7807 16 1 11.8273 0.1188 -1.1159 17 1 10.8289 -0.6692 -3.1805 18 1 9.6326 0.9080 -1.7798 19 6 8.0943 0.0000 3.0490 20 6 8.2624 1.4209 3.5219 21 6 9.4666 2.0840 3.3389 22 6 9.5773 3.3886 3.7945 23 6 8.4897 3.9827 4.4070 24 7 7.3580 3.3234 4.5591 25 6 7.2168 2.0815 4.1381 26 6 3.5805 -1.1972 -0.0053 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1421 0.8900 -0.5132 34 1 6.1420 -0.8900 -0.5133 35 1 8.1180 0.5120 -0.3006 36 1 9.4709 0.5120 0.8561 37 1 10.6679 -3.0939 -1.9148 38 1 9.0543 -0.5143 3.0951 39 1 7.3761 -0.5131 3.6884 40 1 10.2997 1.5942 2.8569 41 1 10.5015 3.9338 3.6727 42 1 8.5677 4.9988 4.7643 43 1 6.2745 1.5735 4.2808 44 1 4.1205 -2.1324 -0.0097 45 1 1.6581 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058504001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:57 Heat of formation + Delta-G solvation = 17.288232 kcal Electronic energy + Delta-G solvation = -26808.066262 eV Core-core repulsion = 23176.011695 eV Total energy + Delta-G solvation = -3632.054567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20200 -39.53665 -38.51442 -35.39814 -33.64140 -32.96065 -32.21154 -31.51842 -30.67327 -29.45045 -28.17370 -26.39302 -24.71195 -23.44210 -22.53025 -22.46152 -21.99220 -20.61337 -18.47299 -17.23930 -16.88290 -16.57410 -16.15362 -15.74702 -15.48428 -15.33256 -15.07048 -14.73576 -14.39648 -13.99487 -13.69300 -13.58563 -13.20361 -13.11055 -13.05391 -12.90779 -12.56829 -12.49760 -12.28258 -12.09166 -11.77618 -11.68071 -11.52921 -11.31483 -11.02635 -10.88797 -10.68771 -10.68241 -10.35837 -9.79835 -9.65453 -9.36864 -9.27505 -8.85171 -8.78693 -8.65162 -8.20975 -7.89314 -6.29762 -4.32371 1.21736 1.42070 1.57693 1.67867 3.10270 3.18308 3.20764 3.26928 3.64185 3.99180 4.18135 4.19853 4.59315 4.93092 4.95785 4.98297 5.01038 5.08222 5.13008 5.16483 5.22220 5.24666 5.34996 5.36399 5.58171 5.60258 5.72515 5.74254 5.81481 5.84089 5.95109 6.00453 6.09431 6.12202 6.22333 6.29618 6.33610 6.39249 6.49164 6.56253 6.65957 6.78870 6.86040 6.93731 7.19191 7.27187 7.34602 8.01033 8.11029 8.31009 8.74252 8.84542 9.29216 10.82621 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007908 B = 0.004939 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.701922 B = 5667.412958 C = 8372.869350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.104 4.104 5 C -0.056 4.056 6 C -0.103 4.103 7 C 0.525 3.475 8 O -0.557 6.557 9 N -0.588 5.588 10 C 0.209 3.791 11 C -0.544 4.544 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.888 5.888 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.161 3.839 20 C -0.145 4.145 21 C -0.063 4.063 22 C -0.179 4.179 23 C 0.089 3.911 24 N -0.491 5.491 25 C 0.118 3.882 26 C -0.099 4.099 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.035 0.965 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.150 0.850 43 H 0.160 0.840 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 9.374 3.569 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.123 4.123 5 C -0.057 4.057 6 C -0.142 4.142 7 C 0.314 3.686 8 O -0.437 6.437 9 N -0.318 5.318 10 C 0.088 3.912 11 C -0.582 4.582 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.525 5.525 15 Si 0.695 3.305 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.189 1.189 19 C 0.037 3.963 20 C -0.149 4.149 21 C -0.089 4.089 22 C -0.199 4.199 23 C -0.068 4.068 24 N -0.199 5.199 25 C -0.039 4.039 26 C -0.117 4.117 27 C -0.138 4.138 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.167 0.833 43 H 0.177 0.823 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.951 9.654 4.311 13.853 hybrid contribution 1.619 0.225 -1.136 1.991 sum -7.332 9.879 3.175 12.706 Atomic orbital electron populations 1.20743 0.91674 1.02419 1.01858 1.19824 0.95676 0.93347 1.00953 1.20888 0.94029 0.97208 1.01872 1.20941 0.94091 0.97402 0.99821 1.19441 0.94286 0.93318 0.98609 1.20709 0.91828 1.06039 0.95661 1.20321 0.81902 0.75513 0.90874 1.90615 1.55275 1.51439 1.46363 1.47921 1.05946 1.71543 1.06405 1.19835 0.88307 0.98433 0.84639 1.21362 1.27553 0.91149 1.18133 0.90212 1.24860 0.95818 0.95418 0.96445 1.69882 1.34625 1.18634 1.29365 0.86963 0.80466 0.83060 0.79972 1.19900 1.20778 1.18875 1.20145 1.01578 0.90718 0.83883 1.21469 0.94680 0.99179 0.99536 1.21628 0.97535 0.94204 0.95573 1.22101 1.00489 0.96192 1.01146 1.22715 0.88704 0.99584 0.95809 1.67728 1.25177 1.08941 1.18100 1.22877 0.98492 0.89962 0.92553 1.21038 0.94051 0.97780 0.98873 1.20934 0.94097 0.97250 1.01562 0.91579 0.91814 0.91884 0.86582 0.86608 0.88726 0.86494 0.94746 0.95451 0.92266 0.88998 0.89385 0.84658 0.85093 0.83264 0.82328 0.85976 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.10 -1.29 5.88 -104.62 -0.62 -1.91 16 3 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 4 C -0.10 -1.60 9.70 -39.58 -0.38 -1.98 16 5 C -0.06 -0.93 4.37 -104.62 -0.46 -1.39 16 6 C -0.10 -1.80 4.38 -29.04 -0.13 -1.93 16 7 C 0.53 10.22 7.66 -10.99 -0.08 10.13 16 8 O -0.56 -11.70 15.17 5.55 0.08 -11.62 16 9 N -0.59 -11.28 2.44 -176.43 -0.43 -11.71 16 10 C 0.21 4.32 4.03 -5.19 -0.02 4.30 16 11 C -0.54 -13.49 9.83 -34.44 -0.34 -13.83 16 12 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 13 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.89 -24.83 13.96 55.43 0.77 -24.06 16 15 Si 0.87 18.97 27.47 -169.99 -4.67 14.30 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 19 C 0.16 2.74 5.56 -5.19 -0.03 2.71 16 20 C -0.15 -2.29 5.48 -104.48 -0.57 -2.86 16 21 C -0.06 -0.89 9.86 -39.28 -0.39 -1.27 16 22 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 23 C 0.09 1.16 11.18 -17.54 -0.20 0.97 16 24 N -0.49 -7.77 10.36 -13.25 -0.14 -7.91 16 25 C 0.12 1.93 10.86 -17.55 -0.19 1.74 16 26 C -0.10 -1.58 9.70 -39.58 -0.38 -1.97 16 27 C -0.12 -1.69 9.70 -39.58 -0.38 -2.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.09 1.53 7.35 -51.93 -0.38 1.14 16 34 H 0.12 2.16 7.94 -51.93 -0.41 1.74 16 35 H 0.03 0.70 5.50 -51.93 -0.29 0.42 16 36 H 0.03 0.55 7.50 -51.93 -0.39 0.16 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 39 H 0.09 1.51 7.37 -51.93 -0.38 1.13 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.16 2.68 7.62 -52.49 -0.40 2.28 16 44 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -30.02 382.06 -9.79 -39.82 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.48 Total: 8.24 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -4.69 Total: -12.83 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.21 Total: -43.67 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.67 Total: 14.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.02 -9.79 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058504001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.106 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds