Wall clock time and date at job start Tue Mar 31 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99792 * 2 1 4 4 C 1.38239 * 119.99569 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00267 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00031 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46895 * 90.00126 * 6 5 4 8 8 O 1.21284 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00222 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99626 * 359.97438 * 9 7 6 11 11 C 1.50699 * 109.47198 * 269.99560 * 10 9 7 12 12 H 1.08001 * 119.99641 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99899 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99984 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00252 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46948 * 89.99779 * 15 13 11 17 17 H 1.48494 * 109.47619 * 209.99825 * 15 13 11 18 18 H 1.48503 * 109.47112 * 330.00458 * 15 13 11 19 19 C 1.46503 * 120.00342 * 179.97438 * 9 7 6 20 20 C 1.50695 * 109.47313 * 270.00350 * 19 9 7 21 21 C 1.38678 * 120.41675 * 270.25293 * 20 19 9 22 22 C 1.38627 * 118.41930 * 180.24221 * 21 20 19 23 23 C 1.38232 * 119.16085 * 359.75178 * 22 21 20 24 24 N 1.31857 * 120.76541 * 359.97438 * 23 22 21 25 25 C 1.31889 * 121.72235 * 0.02562 * 24 23 22 26 26 C 1.38240 * 119.99877 * 0.25414 * 5 4 3 27 27 C 1.38233 * 119.99858 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47294 * 89.99854 * 1 2 3 29 29 H 1.08997 * 109.47042 * 209.99977 * 1 2 3 30 30 H 1.09001 * 109.46840 * 329.99638 * 1 2 3 31 31 H 1.08000 * 120.00058 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99730 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47435 * 330.00408 * 6 5 4 34 34 H 1.09002 * 109.47037 * 209.99785 * 6 5 4 35 35 H 1.09000 * 109.46928 * 30.00295 * 10 9 7 36 36 H 1.09006 * 109.46774 * 149.99687 * 10 9 7 37 37 H 0.97003 * 120.00146 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46632 * 150.00159 * 19 9 7 39 39 H 1.08996 * 109.46728 * 30.00153 * 19 9 7 40 40 H 1.07994 * 120.78944 * 359.96926 * 21 20 19 41 41 H 1.07997 * 120.42083 * 179.72800 * 22 21 20 42 42 H 1.07999 * 119.61954 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.61237 * 179.97438 * 25 24 23 44 44 H 1.07992 * 119.99740 * 179.72864 * 26 5 4 45 45 H 1.08000 * 119.99959 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2810 0.0000 1.4214 8 8 5.4928 0.0004 2.3432 9 7 7.6060 -0.0005 1.6677 10 6 8.5581 -0.0017 0.5542 11 6 8.8839 -1.4228 0.1733 12 1 8.4271 -2.2432 0.7070 13 6 9.7642 -1.6757 -0.8572 14 7 10.0482 -2.9160 -1.1900 15 14 10.5537 -0.2569 -1.7807 16 1 11.8273 0.1188 -1.1159 17 1 10.8289 -0.6692 -3.1805 18 1 9.6326 0.9080 -1.7798 19 6 8.0943 0.0000 3.0490 20 6 8.2624 1.4209 3.5219 21 6 9.4666 2.0840 3.3389 22 6 9.5773 3.3886 3.7945 23 6 8.4897 3.9827 4.4070 24 7 7.3580 3.3234 4.5591 25 6 7.2168 2.0815 4.1381 26 6 3.5805 -1.1972 -0.0053 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1421 0.8900 -0.5132 34 1 6.1420 -0.8900 -0.5133 35 1 8.1180 0.5120 -0.3006 36 1 9.4709 0.5120 0.8561 37 1 10.6679 -3.0939 -1.9148 38 1 9.0543 -0.5143 3.0951 39 1 7.3761 -0.5131 3.6884 40 1 10.2997 1.5942 2.8569 41 1 10.5015 3.9338 3.6727 42 1 8.5677 4.9988 4.7643 43 1 6.2745 1.5735 4.2808 44 1 4.1205 -2.1324 -0.0097 45 1 1.6581 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058504001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:56 Heat of formation + Delta-G solvation = 2.370364 kcal Electronic energy + Delta-G solvation = -26808.713149 eV Core-core repulsion = 23176.011695 eV Total energy + Delta-G solvation = -3632.701455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47775 -40.75988 -39.79334 -36.96240 -34.97525 -34.55203 -33.58384 -32.68866 -31.79793 -30.60375 -29.91507 -27.65305 -25.89697 -24.70241 -24.17516 -23.60333 -23.15834 -21.76315 -19.98014 -19.12051 -18.14493 -17.92062 -17.49848 -17.00950 -16.82580 -16.57103 -16.26520 -16.03271 -15.87883 -15.36207 -14.90693 -14.71363 -14.50618 -14.33996 -14.25638 -14.17303 -14.00166 -13.75326 -13.61934 -13.27764 -13.21745 -12.97627 -12.69645 -12.67768 -12.50629 -12.40278 -12.05083 -11.90141 -11.80251 -11.70838 -10.97862 -10.78596 -10.69272 -10.45617 -9.98492 -9.79419 -9.48677 -9.35412 -8.29168 -6.37027 0.10894 0.32120 0.43349 0.53413 1.40010 1.42700 1.51243 1.71605 2.25769 2.34664 2.85479 2.97018 3.04970 3.51921 3.74712 3.79653 3.86485 3.91666 4.00171 4.09431 4.10809 4.12482 4.15674 4.28352 4.48007 4.56212 4.63262 4.66235 4.67188 4.73466 4.75201 4.84825 4.86855 4.87972 4.88025 5.00686 5.19237 5.21564 5.30785 5.34977 5.43748 5.51477 5.63573 5.71354 5.74044 5.78093 6.15152 6.18422 6.56516 6.70013 7.00665 7.23033 7.33537 8.86947 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007908 B = 0.004939 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.701922 B = 5667.412958 C = 8372.869350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.079 4.079 6 C -0.096 4.096 7 C 0.520 3.480 8 O -0.577 6.577 9 N -0.591 5.591 10 C 0.219 3.781 11 C -0.540 4.540 12 H 0.031 0.969 13 C 0.023 3.977 14 N -0.941 5.941 15 Si 0.937 3.063 16 H -0.261 1.261 17 H -0.288 1.288 18 H -0.238 1.238 19 C 0.161 3.839 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.165 4.165 23 C 0.088 3.912 24 N -0.513 5.513 25 C 0.104 3.896 26 C -0.122 4.122 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.170 0.830 42 H 0.186 0.814 43 H 0.140 0.860 44 H 0.111 0.889 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 12.867 3.236 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.080 4.080 6 C -0.136 4.136 7 C 0.309 3.691 8 O -0.458 6.458 9 N -0.321 5.321 10 C 0.097 3.903 11 C -0.578 4.578 12 H 0.050 0.950 13 C -0.177 4.177 14 N -0.581 5.581 15 Si 0.759 3.241 16 H -0.185 1.185 17 H -0.214 1.214 18 H -0.161 1.161 19 C 0.038 3.962 20 C -0.158 4.158 21 C -0.096 4.096 22 C -0.184 4.184 23 C -0.069 4.069 24 N -0.222 5.222 25 C -0.053 4.053 26 C -0.140 4.140 27 C -0.145 4.145 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.202 0.798 43 H 0.157 0.843 44 H 0.129 0.871 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.970 13.156 4.005 16.419 hybrid contribution 1.560 -0.900 -0.935 2.029 sum -7.410 12.256 3.069 14.647 Atomic orbital electron populations 1.20808 0.88878 1.03578 1.03196 1.20282 0.97738 0.92696 0.99058 1.21258 0.93519 0.98686 1.00829 1.21131 0.95135 0.97107 0.99999 1.19462 0.93668 0.94281 1.00565 1.20638 0.92995 1.05706 0.94226 1.20705 0.81855 0.74994 0.91542 1.90593 1.55684 1.52319 1.47162 1.47963 1.05775 1.71351 1.06967 1.19658 0.89323 0.95776 0.85532 1.21485 1.26747 0.92132 1.17464 0.95023 1.25740 0.96419 0.98101 0.97402 1.70049 1.36063 1.21440 1.30512 0.85876 0.80174 0.80100 0.77916 1.18535 1.21365 1.16116 1.20149 1.01065 0.92220 0.82757 1.21229 0.95698 0.98187 1.00664 1.21855 0.96923 0.95141 0.95654 1.22492 1.01624 0.95266 0.99040 1.23370 0.87891 1.00792 0.94834 1.67719 1.26963 1.08707 1.18819 1.22617 0.98134 0.90631 0.93876 1.21137 0.95291 0.97345 1.00251 1.21223 0.93366 0.98847 1.01088 0.89997 0.90901 0.90555 0.83849 0.85775 0.87258 0.88298 0.93596 0.93561 0.92293 0.88909 0.90563 0.83500 0.81213 0.79759 0.84279 0.87093 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.09 16 2 C -0.10 -2.42 5.88 -19.86 -0.12 -2.54 16 3 C -0.13 -3.22 9.70 22.27 0.22 -3.01 16 4 C -0.12 -3.49 9.70 22.27 0.22 -3.27 16 5 C -0.08 -2.71 4.37 -19.87 -0.09 -2.80 16 6 C -0.10 -3.49 4.38 29.10 0.13 -3.36 16 7 C 0.52 20.97 7.66 87.66 0.67 21.64 16 8 O -0.58 -25.35 15.17 -3.04 -0.05 -25.39 16 9 N -0.59 -23.17 2.44 -830.48 -2.03 -25.20 16 10 C 0.22 8.96 4.03 85.63 0.35 9.30 16 11 C -0.54 -27.60 9.83 25.60 0.25 -27.34 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 13 C 0.02 1.18 5.47 84.65 0.46 1.64 16 14 N -0.94 -54.47 13.96 21.45 0.30 -54.17 16 15 Si 0.94 38.26 27.47 68.60 1.88 40.14 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.24 -8.66 6.54 99.48 0.65 -8.01 16 19 C 0.16 5.68 5.56 85.63 0.48 6.15 16 20 C -0.15 -4.82 5.48 -19.77 -0.11 -4.92 16 21 C -0.07 -1.79 9.86 22.47 0.22 -1.56 16 22 C -0.16 -3.42 10.11 22.36 0.23 -3.20 16 23 C 0.09 2.02 11.18 84.69 0.95 2.97 16 24 N -0.51 -15.62 10.36 -195.83 -2.03 -17.64 16 25 C 0.10 3.41 10.86 84.67 0.92 4.33 16 26 C -0.12 -4.06 9.70 22.27 0.22 -3.84 16 27 C -0.13 -3.54 9.70 22.27 0.22 -3.32 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.11 3.52 7.35 -2.39 -0.02 3.50 16 34 H 0.10 3.89 7.94 -2.39 -0.02 3.87 16 35 H 0.05 1.80 5.50 -2.39 -0.01 1.79 16 36 H 0.05 1.75 7.50 -2.38 -0.02 1.73 16 37 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.09 3.17 8.03 -2.39 -0.02 3.15 16 39 H 0.08 2.81 7.37 -2.39 -0.02 2.79 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.14 4.98 7.62 -2.91 -0.02 4.96 16 44 H 0.11 3.77 8.06 -2.91 -0.02 3.75 16 45 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -67.98 382.06 4.92 -63.06 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.92 Total: 33.43 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.92 Total: -14.23 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.76 Total: -97.01 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.39 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.88 Total: 40.14 kcal Total: -67.98 4.92 -63.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058504001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.427 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds