Wall clock time and date at job start Tue Mar 31 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38384 * 119.85916 * 2 1 4 4 C 1.37935 * 120.14358 * 179.97438 * 3 2 1 5 5 C 1.39595 * 119.85789 * 0.02562 * 4 3 2 6 6 C 1.47841 * 120.14615 * 180.02562 * 5 4 3 7 7 O 1.21553 * 119.99709 * 131.76926 * 6 5 4 8 8 N 1.34774 * 120.00334 * 311.77355 * 6 5 4 9 9 C 1.46494 * 119.99666 * 5.00039 * 8 6 5 10 10 C 1.50698 * 109.47748 * 95.77123 * 9 8 6 11 11 H 1.08001 * 119.99729 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00345 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00189 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00181 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47145 * 89.99497 * 14 12 10 16 16 H 1.48498 * 109.47543 * 209.99842 * 14 12 10 17 17 H 1.48507 * 109.46977 * 329.99978 * 14 12 10 18 18 C 1.46497 * 120.00060 * 184.99525 * 8 6 5 19 19 C 1.50703 * 109.47247 * 90.00069 * 18 8 6 20 20 C 1.38668 * 120.41734 * 269.72555 * 19 18 8 21 21 C 1.38629 * 118.41862 * 179.78401 * 20 19 18 22 22 C 1.38223 * 119.15965 * 0.50366 * 21 20 19 23 23 N 1.31855 * 120.76570 * 359.73469 * 22 21 20 24 24 C 1.31885 * 121.72453 * 359.97438 * 23 22 21 25 25 C 1.39559 * 119.70780 * 0.02562 * 5 4 3 26 26 C 1.37981 * 119.85572 * 359.74343 * 25 5 4 27 27 C 1.50697 * 119.93065 * 180.27353 * 26 25 5 28 28 H 1.08998 * 109.47231 * 89.99240 * 1 2 3 29 29 H 1.09006 * 109.46633 * 329.99704 * 1 2 3 30 30 H 1.08998 * 109.47590 * 209.99704 * 1 2 3 31 31 H 1.07993 * 119.92469 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.07211 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.47153 * 215.76717 * 9 8 6 34 34 H 1.09006 * 109.47584 * 335.76319 * 9 8 6 35 35 H 0.97002 * 119.99888 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.47017 * 210.00056 * 18 8 6 37 37 H 1.09001 * 109.47252 * 329.99903 * 18 8 6 38 38 H 1.07996 * 120.79427 * 0.02562 * 20 19 18 39 39 H 1.07998 * 120.42320 * 180.22141 * 21 20 19 40 40 H 1.08001 * 119.61870 * 179.75204 * 22 21 20 41 41 H 1.08004 * 119.61785 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.07196 * 180.02562 * 25 5 4 43 43 H 1.08996 * 109.47311 * 270.23589 * 27 26 25 44 44 H 1.09006 * 109.47031 * 30.23131 * 27 26 25 45 45 H 1.09000 * 109.47188 * 150.23073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.2762 -0.0002 0.0005 6 6 5.7546 -0.0003 0.0017 7 8 6.3617 -0.7019 0.7870 8 7 6.4293 0.7776 -0.8679 9 6 5.7018 1.7041 -1.7387 10 6 5.6817 3.0736 -1.1102 11 1 6.1625 3.2374 -0.1571 12 6 5.0488 4.1172 -1.7514 13 7 4.4629 3.9177 -2.9117 14 14 5.0234 5.8147 -0.9720 15 1 6.2106 6.5844 -1.4232 16 1 3.7866 6.5282 -1.3797 17 1 5.0530 5.6808 0.5068 18 6 7.8902 0.6967 -0.9421 19 6 8.2847 -0.3450 -1.9572 20 6 8.4713 -1.6643 -1.5732 21 6 8.8294 -2.5891 -2.5418 22 6 8.9977 -2.1663 -3.8470 23 7 8.8166 -0.9022 -4.1752 24 6 8.4701 0.0036 -3.2814 25 6 3.5753 -1.2070 -0.0006 26 6 2.1955 -1.1999 0.0037 27 6 1.4369 -2.5020 0.0088 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3634 -0.8900 0.5138 31 1 1.6524 2.1333 0.0004 32 1 4.1118 2.1443 0.0010 33 1 6.1973 1.7565 -2.7082 34 1 4.6793 1.3505 -1.8721 35 1 4.0179 4.6520 -3.3630 36 1 8.2930 1.6648 -1.2397 37 1 8.2890 0.4218 0.0344 38 1 8.3369 -1.9650 -0.5447 39 1 8.9795 -3.6258 -2.2792 40 1 9.2806 -2.8798 -4.6069 41 1 8.3303 1.0297 -3.5879 42 1 4.1117 -2.1444 -0.0001 43 1 1.2545 -2.8202 -1.0176 44 1 2.0229 -3.2619 0.5260 45 1 0.4848 -2.3659 0.5218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060625042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:01 Heat of formation + Delta-G solvation = 18.349261 kcal Electronic energy + Delta-G solvation = -27360.417303 eV Core-core repulsion = 23728.408745 eV Total energy + Delta-G solvation = -3632.008558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17699 -39.56228 -38.15717 -35.32083 -33.53201 -32.70944 -32.08832 -31.75631 -31.21994 -27.73100 -27.62630 -26.57864 -25.46139 -23.43999 -22.92299 -22.31808 -21.54486 -20.82020 -18.56368 -16.98124 -16.65548 -16.42249 -15.97370 -15.81213 -15.30352 -14.98104 -14.88327 -14.55004 -14.20819 -13.93435 -13.68370 -13.42808 -12.97478 -12.82300 -12.74760 -12.65589 -12.64300 -12.44445 -12.22062 -11.87911 -11.73297 -11.56783 -11.34574 -11.15064 -11.10274 -10.92306 -10.74073 -10.40973 -10.21096 -9.88833 -9.60631 -9.25038 -9.23405 -8.75265 -8.66048 -8.33100 -7.99925 -7.84307 -6.27470 -4.35990 1.30165 1.51558 1.52750 1.89637 3.16658 3.25090 3.26769 3.35640 3.75035 4.17692 4.21866 4.33569 4.67285 5.01620 5.02428 5.06289 5.13896 5.16942 5.23238 5.27122 5.32683 5.33125 5.48173 5.62635 5.65141 5.67039 5.82574 5.88780 5.96923 5.99732 6.02981 6.08238 6.16960 6.21938 6.34426 6.44872 6.55268 6.58251 6.66851 6.88793 6.93693 7.03916 7.09524 7.16405 7.42334 7.49759 7.66085 7.95108 8.18763 8.21378 8.68495 8.88536 9.30796 10.78060 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007907 B = 0.005793 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3540.272385 B = 4831.888325 C = 7401.372795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.126 4.126 6 C 0.562 3.438 7 O -0.569 6.569 8 N -0.584 5.584 9 C 0.230 3.770 10 C -0.545 4.545 11 H 0.064 0.936 12 C 0.071 3.929 13 N -0.879 5.879 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.160 3.840 19 C -0.145 4.145 20 C -0.058 4.058 21 C -0.181 4.181 22 C 0.090 3.910 23 N -0.489 5.489 24 C 0.116 3.884 25 C -0.073 4.073 26 C -0.112 4.112 27 C -0.110 4.110 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.169 0.831 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 -9.601 2.377 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.129 4.129 6 C 0.351 3.649 7 O -0.450 6.450 8 N -0.313 5.313 9 C 0.111 3.889 10 C -0.583 4.583 11 H 0.082 0.918 12 C -0.134 4.134 13 N -0.516 5.516 14 Si 0.719 3.281 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C 0.036 3.964 19 C -0.148 4.148 20 C -0.084 4.084 21 C -0.201 4.201 22 C -0.068 4.068 23 N -0.198 5.198 24 C -0.041 4.041 25 C -0.092 4.092 26 C -0.112 4.112 27 C -0.166 4.166 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.186 0.814 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.110 -9.582 1.733 9.800 hybrid contribution -0.196 0.800 0.991 1.289 sum -1.306 -8.782 2.724 9.287 Atomic orbital electron populations 1.20857 0.91796 1.02390 1.02163 1.19859 0.95618 0.92855 0.99211 1.20982 0.94379 0.97084 1.02049 1.22401 0.94370 0.99726 0.92023 1.19816 0.93065 0.94378 1.05608 1.18384 0.87253 0.79089 0.80131 1.90650 1.70094 1.43945 1.40336 1.48158 1.05578 1.39191 1.38366 1.19684 0.93024 0.86955 0.89277 1.21424 1.36499 0.93669 1.06703 0.91755 1.24937 0.94771 0.98968 0.94711 1.69931 1.34429 1.32690 1.14566 0.86580 0.77811 0.83854 0.79837 1.20361 1.20959 1.19587 1.20143 0.81913 0.97054 0.97287 1.21433 1.00246 0.96200 0.96919 1.21655 0.93963 0.92442 1.00384 1.22096 1.02773 1.00604 0.94634 1.22696 0.96294 0.92845 0.94934 1.67707 1.12154 1.02305 1.37586 1.22819 0.93384 0.99297 0.88619 1.20861 0.93134 0.96838 0.98374 1.19477 0.93233 0.94730 1.03787 1.20771 0.99730 0.94210 1.01909 0.91272 0.91760 0.91497 0.86026 0.81404 0.94810 0.93243 0.92316 0.88774 0.89647 0.84557 0.85258 0.83290 0.82446 0.86360 0.91635 0.91999 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.60 36.00 0.35 -1.02 16 2 C -0.08 -1.18 5.89 -104.53 -0.62 -1.79 16 3 C -0.13 -2.25 9.68 -39.64 -0.38 -2.64 16 4 C -0.07 -1.36 7.52 -39.19 -0.29 -1.66 16 5 C -0.13 -2.54 4.95 -104.97 -0.52 -3.06 16 6 C 0.56 11.93 7.24 -12.33 -0.09 11.84 16 7 O -0.57 -12.65 16.47 5.32 0.09 -12.56 16 8 N -0.58 -12.02 2.44 -177.55 -0.43 -12.45 16 9 C 0.23 5.26 4.66 -5.20 -0.02 5.23 16 10 C -0.54 -13.15 6.84 -34.44 -0.24 -13.39 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.88 -22.97 13.29 55.43 0.74 -22.23 16 14 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 C 0.16 2.85 5.61 -5.19 -0.03 2.82 16 19 C -0.14 -2.42 5.48 -104.48 -0.57 -2.99 16 20 C -0.06 -0.89 9.86 -39.28 -0.39 -1.28 16 21 C -0.18 -2.42 10.11 -39.44 -0.40 -2.81 16 22 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 23 N -0.49 -8.11 10.36 -13.25 -0.14 -8.25 16 24 C 0.12 1.96 10.86 -17.55 -0.19 1.77 16 25 C -0.07 -1.31 9.37 -39.18 -0.37 -1.68 16 26 C -0.11 -1.76 5.87 -104.68 -0.61 -2.37 16 27 C -0.11 -1.29 9.60 36.00 0.35 -0.95 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.07 0.67 5.92 -51.93 -0.31 0.37 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.17 3.74 4.74 -52.49 -0.25 3.49 16 33 H 0.03 0.82 8.11 -51.93 -0.42 0.39 16 34 H 0.05 1.21 5.40 -51.93 -0.28 0.93 16 35 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.09 1.61 8.02 -51.93 -0.42 1.20 16 37 H 0.09 1.50 7.31 -51.93 -0.38 1.12 16 38 H 0.14 2.10 7.96 -52.49 -0.42 1.68 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.16 2.60 8.06 -52.48 -0.42 2.18 16 42 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.07 0.68 5.92 -51.93 -0.31 0.37 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -28.44 375.47 -9.56 -37.99 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.12 Total: 8.70 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -4.33 Total: -11.26 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.17 Total: -42.94 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.44 -9.56 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.344 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds