Wall clock time and date at job start Tue Mar 31 2020 14:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 119.99863 * 2 1 4 4 C 1.38229 * 120.00192 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00054 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00306 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47160 * 19.99645 * 6 5 4 8 8 N 1.46901 * 109.47359 * 140.00063 * 6 5 4 9 9 C 1.46895 * 110.99816 * 204.99904 * 8 6 5 10 10 C 1.50706 * 109.47182 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99667 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72734 * 10 9 8 13 13 C 1.37095 * 119.99878 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00160 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00380 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99401 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00554 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46783 * 60.00161 * 17 15 13 19 19 H 1.48496 * 109.47291 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46865 * 300.00343 * 17 15 13 21 21 C 1.50704 * 109.46918 * 259.99777 * 6 5 4 22 22 C 1.38237 * 120.00078 * 279.72553 * 21 6 5 23 23 C 1.38233 * 119.99575 * 179.78803 * 22 21 6 24 24 C 1.38231 * 120.00289 * 0.44278 * 23 22 21 25 25 C 1.38233 * 120.00379 * 359.81100 * 24 23 22 26 26 C 1.38236 * 119.99730 * 100.00163 * 21 6 5 27 27 C 1.38239 * 119.99605 * 0.25249 * 5 4 3 28 28 C 1.38235 * 119.99972 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47125 * 89.99921 * 1 2 3 30 30 H 1.09005 * 109.46604 * 209.99947 * 1 2 3 31 31 H 1.09006 * 109.47168 * 329.99716 * 1 2 3 32 32 H 1.08001 * 119.99693 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.99995 * 179.97438 * 4 3 2 34 34 H 1.00899 * 111.00258 * 81.04134 * 8 6 5 35 35 H 1.09001 * 109.47613 * 60.00104 * 9 8 6 36 36 H 1.08998 * 109.47678 * 300.00000 * 9 8 6 37 37 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 38 38 H 0.97004 * 120.00112 * 179.97438 * 16 15 13 39 39 H 1.07998 * 119.99765 * 359.97438 * 22 21 6 40 40 H 1.08001 * 119.99789 * 180.27146 * 23 22 21 41 41 H 1.08007 * 120.00193 * 179.83240 * 24 23 22 42 42 H 1.07996 * 120.00720 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.00193 * 359.97351 * 26 21 6 44 44 H 1.08002 * 119.99698 * 179.73200 * 27 5 4 45 45 H 1.07993 * 119.99928 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0016 6 6 5.7787 0.0002 -0.0028 7 1 6.1423 0.9657 0.3488 8 7 6.2691 -1.0612 0.8866 9 6 7.6168 -0.7516 1.3823 10 6 8.0852 -1.8600 2.2897 11 8 7.3671 -2.8141 2.5021 12 7 9.3044 -1.7938 2.8604 13 6 9.7306 -2.8023 3.6854 14 1 9.0893 -3.6497 3.8784 15 6 10.9878 -2.7345 4.2735 16 7 11.7683 -1.7038 4.0383 17 14 11.5683 -4.1083 5.3982 18 1 11.5934 -5.3876 4.6446 19 1 12.9333 -3.7986 5.8941 20 1 10.6395 -4.2306 6.5503 21 6 6.2799 -0.2460 -1.4025 22 6 6.3193 -1.5327 -1.9064 23 6 6.7749 -1.7578 -3.1919 24 6 7.1998 -0.6975 -3.9703 25 6 7.1654 0.5886 -3.4647 26 6 6.7057 0.8143 -2.1806 27 6 3.5806 -1.1970 -0.0074 28 6 2.1982 -1.1972 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6581 2.1325 0.0004 33 1 4.1204 2.1326 -0.0010 34 1 6.2511 -1.9577 0.4240 35 1 7.5934 0.1863 1.9373 36 1 8.3015 -0.6579 0.5394 37 1 9.8806 -1.0331 2.6869 38 1 12.6458 -1.6561 4.4490 39 1 5.9912 -2.3615 -1.2967 40 1 6.8015 -2.7626 -3.5871 41 1 7.5583 -0.8738 -4.9737 42 1 7.4970 1.4171 -4.0729 43 1 6.6788 1.8191 -1.7856 44 1 4.1206 -2.1323 -0.0126 45 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066472924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:33 Heat of formation + Delta-G solvation = 11.859461 kcal Electronic energy + Delta-G solvation = -26262.077792 eV Core-core repulsion = 22629.787816 eV Total energy + Delta-G solvation = -3632.289977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20477 -38.83703 -38.15152 -35.95080 -33.91279 -32.66035 -31.25536 -31.16067 -30.85697 -30.72255 -28.15485 -26.29034 -24.56721 -23.85883 -22.60499 -22.27284 -21.57127 -20.17904 -19.26753 -17.91109 -17.26792 -16.58983 -15.80976 -15.71675 -15.23710 -14.97348 -14.78402 -14.69901 -14.42935 -14.06166 -13.91998 -13.66293 -13.48208 -13.30812 -13.29128 -13.16490 -12.78388 -12.30638 -12.20745 -12.04779 -11.90116 -11.66515 -11.52277 -11.26393 -11.08427 -11.01676 -10.91496 -10.84565 -10.43130 -10.19856 -9.48411 -8.98074 -8.86942 -8.83800 -8.48293 -8.40293 -8.08404 -7.94392 -6.39916 -3.80684 1.19809 1.34629 1.46876 1.49870 3.21356 3.26800 3.31298 3.69197 3.80596 3.93128 4.10407 4.32772 4.73218 4.77002 4.81993 4.87575 4.92418 5.03395 5.06629 5.09328 5.19038 5.19935 5.29129 5.38006 5.43875 5.45980 5.54103 5.58677 5.70458 5.76388 5.82937 5.90257 5.96670 5.99962 6.08892 6.14091 6.25982 6.38756 6.44679 6.46266 6.49420 6.62821 6.68076 6.92925 7.06480 7.22235 7.56640 7.60193 8.07707 8.63052 9.19433 9.56125 10.07585 10.77811 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003105 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.889215 B = 9014.494284 C =10515.239746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.061 4.061 6 C 0.163 3.837 7 H 0.094 0.906 8 N -0.654 5.654 9 C 0.049 3.951 10 C 0.442 3.558 11 O -0.584 6.584 12 N -0.563 5.563 13 C -0.299 4.299 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.110 4.110 27 C -0.087 4.087 28 C -0.121 4.121 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.350 0.650 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 7.806 -14.971 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.141 4.141 4 C -0.129 4.129 5 C -0.061 4.061 6 C 0.053 3.947 7 H 0.112 0.888 8 N -0.286 5.286 9 C -0.083 4.083 10 C 0.228 3.772 11 O -0.468 6.468 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.138 4.138 26 C -0.129 4.129 27 C -0.105 4.105 28 C -0.139 4.139 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.353 7.427 -14.155 22.164 hybrid contribution 1.404 -0.307 -0.315 1.471 sum -13.949 7.120 -14.470 21.323 Atomic orbital electron populations 1.20765 0.91577 1.02580 1.01958 1.19868 0.95805 0.93331 1.00453 1.20892 0.93979 0.97295 1.01953 1.20913 0.94125 0.97268 1.00563 1.19565 0.93851 0.93353 0.99357 1.19470 0.91170 0.97100 0.86974 0.88829 1.60351 1.24128 1.04513 1.39607 1.21717 0.89331 0.99301 0.97960 1.19760 0.83295 0.88684 0.85483 1.90519 1.55524 1.35193 1.65542 1.41840 1.13997 1.22057 1.42053 1.19652 0.99909 1.01186 1.22139 0.87982 1.25257 0.96004 0.98080 0.98575 1.69607 1.10393 1.29631 1.44722 0.85921 0.77579 0.80630 0.80116 1.19927 1.20986 1.19872 1.20642 0.98956 0.93796 0.97159 1.20993 0.99636 0.96551 0.95821 1.21119 0.98832 0.99089 0.94245 1.21137 1.00297 0.92966 0.99821 1.21119 0.99949 0.96982 0.95727 1.21020 0.99100 0.98492 0.94283 1.20933 0.93755 0.97951 0.97851 1.20999 0.94198 0.97380 1.01365 0.91515 0.91681 0.91785 0.86429 0.86328 0.82764 0.89481 0.93625 0.77458 0.91837 0.85962 0.86034 0.86275 0.86192 0.86105 0.86028 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.35 9.70 -39.59 -0.38 -1.73 16 4 C -0.11 -1.29 9.67 -39.59 -0.38 -1.68 16 5 C -0.06 -0.80 4.94 -104.62 -0.52 -1.32 16 6 C 0.16 2.19 2.43 -70.02 -0.17 2.02 16 7 H 0.09 1.17 7.52 -51.93 -0.39 0.78 16 8 N -0.65 -10.84 5.32 -110.46 -0.59 -11.43 16 9 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 10 C 0.44 10.60 7.82 -10.98 -0.09 10.51 16 11 O -0.58 -15.97 15.78 5.54 0.09 -15.88 16 12 N -0.56 -14.47 5.29 -10.96 -0.06 -14.52 16 13 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 17 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.10 -1.32 4.70 -104.62 -0.49 -1.81 16 22 C -0.11 -1.43 8.92 -39.58 -0.35 -1.78 16 23 C -0.11 -1.32 10.05 -39.59 -0.40 -1.72 16 24 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.11 -1.25 9.67 -39.58 -0.38 -1.64 16 27 C -0.09 -1.16 9.12 -39.58 -0.36 -1.52 16 28 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 34 H 0.35 5.96 5.39 -39.29 -0.21 5.75 16 35 H 0.09 1.45 8.06 -51.93 -0.42 1.04 16 36 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 39 H 0.12 1.56 6.05 -52.49 -0.32 1.25 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.15 8.04 -52.49 -0.42 0.72 16 44 H 0.12 1.64 6.81 -52.49 -0.36 1.28 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -32.17 380.00 -10.52 -42.69 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -6.16 Total: 16.53 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -5.23 Total: -15.30 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.08 Total: -50.01 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.09 Total: -15.88 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.17 -10.52 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.554 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds