Wall clock time and date at job start Tue Mar 31 2020 14:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 119.99863 * 2 1 4 4 C 1.38229 * 120.00192 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00054 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00306 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47160 * 19.99645 * 6 5 4 8 8 N 1.46901 * 109.47359 * 140.00063 * 6 5 4 9 9 C 1.46895 * 110.99816 * 204.99904 * 8 6 5 10 10 C 1.50706 * 109.47182 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99667 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72734 * 10 9 8 13 13 C 1.37095 * 119.99878 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00160 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00380 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99401 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00554 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46783 * 60.00161 * 17 15 13 19 19 H 1.48496 * 109.47291 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46865 * 300.00343 * 17 15 13 21 21 C 1.50704 * 109.46918 * 259.99777 * 6 5 4 22 22 C 1.38237 * 120.00078 * 279.72553 * 21 6 5 23 23 C 1.38233 * 119.99575 * 179.78803 * 22 21 6 24 24 C 1.38231 * 120.00289 * 0.44278 * 23 22 21 25 25 C 1.38233 * 120.00379 * 359.81100 * 24 23 22 26 26 C 1.38236 * 119.99730 * 100.00163 * 21 6 5 27 27 C 1.38239 * 119.99605 * 0.25249 * 5 4 3 28 28 C 1.38235 * 119.99972 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47125 * 89.99921 * 1 2 3 30 30 H 1.09005 * 109.46604 * 209.99947 * 1 2 3 31 31 H 1.09006 * 109.47168 * 329.99716 * 1 2 3 32 32 H 1.08001 * 119.99693 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.99995 * 179.97438 * 4 3 2 34 34 H 1.00899 * 111.00258 * 81.04134 * 8 6 5 35 35 H 1.09001 * 109.47613 * 60.00104 * 9 8 6 36 36 H 1.08998 * 109.47678 * 300.00000 * 9 8 6 37 37 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 38 38 H 0.97004 * 120.00112 * 179.97438 * 16 15 13 39 39 H 1.07998 * 119.99765 * 359.97438 * 22 21 6 40 40 H 1.08001 * 119.99789 * 180.27146 * 23 22 21 41 41 H 1.08007 * 120.00193 * 179.83240 * 24 23 22 42 42 H 1.07996 * 120.00720 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.00193 * 359.97351 * 26 21 6 44 44 H 1.08002 * 119.99698 * 179.73200 * 27 5 4 45 45 H 1.07993 * 119.99928 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0016 6 6 5.7787 0.0002 -0.0028 7 1 6.1423 0.9657 0.3488 8 7 6.2691 -1.0612 0.8866 9 6 7.6168 -0.7516 1.3823 10 6 8.0852 -1.8600 2.2897 11 8 7.3671 -2.8141 2.5021 12 7 9.3044 -1.7938 2.8604 13 6 9.7306 -2.8023 3.6854 14 1 9.0893 -3.6497 3.8784 15 6 10.9878 -2.7345 4.2735 16 7 11.7683 -1.7038 4.0383 17 14 11.5683 -4.1083 5.3982 18 1 11.5934 -5.3876 4.6446 19 1 12.9333 -3.7986 5.8941 20 1 10.6395 -4.2306 6.5503 21 6 6.2799 -0.2460 -1.4025 22 6 6.3193 -1.5327 -1.9064 23 6 6.7749 -1.7578 -3.1919 24 6 7.1998 -0.6975 -3.9703 25 6 7.1654 0.5886 -3.4647 26 6 6.7057 0.8143 -2.1806 27 6 3.5806 -1.1970 -0.0074 28 6 2.1982 -1.1972 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6581 2.1325 0.0004 33 1 4.1204 2.1326 -0.0010 34 1 6.2511 -1.9577 0.4240 35 1 7.5934 0.1863 1.9373 36 1 8.3015 -0.6579 0.5394 37 1 9.8806 -1.0331 2.6869 38 1 12.6458 -1.6561 4.4490 39 1 5.9912 -2.3615 -1.2967 40 1 6.8015 -2.7626 -3.5871 41 1 7.5583 -0.8738 -4.9737 42 1 7.4970 1.4171 -4.0729 43 1 6.6788 1.8191 -1.7856 44 1 4.1206 -2.1323 -0.0126 45 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066472924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:32 Heat of formation + Delta-G solvation = -6.292523 kcal Electronic energy + Delta-G solvation = -26262.864922 eV Core-core repulsion = 22629.787816 eV Total energy + Delta-G solvation = -3633.077106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18762 -40.03517 -39.66802 -37.12438 -35.92864 -33.73851 -33.23825 -32.06105 -31.85933 -31.60864 -29.21659 -27.74757 -26.02295 -25.07720 -23.59502 -23.14561 -22.45561 -21.15374 -21.09051 -19.94039 -18.39754 -17.82088 -17.20890 -16.69812 -16.50713 -16.33354 -15.94191 -15.85348 -15.75886 -15.65295 -15.13809 -14.71271 -14.44209 -14.42254 -14.28399 -14.15381 -13.96412 -13.62894 -13.47911 -13.28203 -13.07666 -12.88306 -12.85304 -12.67726 -12.44606 -12.18660 -12.12680 -11.93529 -11.84085 -11.73393 -11.51714 -10.38942 -10.03447 -9.85718 -9.77921 -9.74668 -9.42267 -9.27745 -8.47628 -5.96641 0.30774 0.47571 0.57839 0.59012 1.38814 1.40609 1.51763 2.02930 2.27845 2.75179 2.87604 2.98506 3.19234 3.49637 3.78469 3.85860 3.98130 4.06254 4.10822 4.17237 4.22445 4.27334 4.29930 4.31891 4.46609 4.56013 4.58163 4.62802 4.68781 4.71960 4.86736 4.91799 4.98386 5.06571 5.12058 5.24433 5.31982 5.39269 5.50663 5.53853 5.58703 5.60435 5.68610 5.76346 5.92745 6.08349 6.09542 6.20334 6.27567 6.58322 7.10789 7.53877 8.09121 8.69635 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003105 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.889215 B = 9014.494284 C =10515.239746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.077 4.077 6 C 0.170 3.830 7 H 0.105 0.895 8 N -0.666 5.666 9 C 0.066 3.934 10 C 0.439 3.561 11 O -0.623 6.623 12 N -0.571 5.571 13 C -0.335 4.335 14 H 0.079 0.921 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.993 3.007 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.108 4.108 28 C -0.136 4.136 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.344 0.656 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.106 0.894 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 9.596 -15.877 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.134 4.134 5 C -0.077 4.077 6 C 0.060 3.940 7 H 0.123 0.877 8 N -0.298 5.298 9 C -0.066 4.066 10 C 0.227 3.773 11 O -0.509 6.509 12 N -0.208 5.208 13 C -0.465 4.465 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.154 4.154 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.230 0.770 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.159 0.841 44 H 0.124 0.876 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.628 9.248 -15.078 23.603 hybrid contribution 1.416 -0.847 -0.100 1.654 sum -14.211 8.400 -15.178 22.425 Atomic orbital electron populations 1.20811 0.89450 1.03451 1.02971 1.20250 0.97466 0.92945 0.99270 1.21256 0.93889 0.98342 1.00947 1.21194 0.94776 0.97432 1.00002 1.19638 0.93718 0.93896 1.00476 1.19459 0.91422 0.96143 0.86966 0.87735 1.60352 1.22969 1.05333 1.41150 1.21543 0.90472 0.97293 0.97291 1.20767 0.82240 0.89349 0.84984 1.90487 1.56419 1.37207 1.66795 1.41900 1.14766 1.21838 1.42314 1.19634 1.00712 1.01812 1.24321 0.90342 1.26047 0.95464 1.00325 0.99354 1.69668 1.10694 1.30672 1.45033 0.84992 0.77571 0.77731 0.78071 1.19676 1.19350 1.19707 1.20594 0.99831 0.94165 0.97012 1.21043 1.00851 0.96597 0.96564 1.21355 0.98936 1.00284 0.93975 1.21483 0.99502 0.92778 1.00750 1.21488 0.99013 0.97782 0.95634 1.21297 0.98643 0.98959 0.94629 1.20970 0.94582 0.97751 0.99304 1.21212 0.93850 0.98594 1.01694 0.90318 0.91319 0.90450 0.83832 0.84289 0.83487 0.87512 0.92146 0.76987 0.91238 0.87314 0.84956 0.83880 0.83502 0.84142 0.87555 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 2 C -0.10 -2.07 5.88 -19.86 -0.12 -2.18 16 3 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 4 C -0.12 -2.54 9.67 22.27 0.22 -2.33 16 5 C -0.08 -2.01 4.94 -19.87 -0.10 -2.11 16 6 C 0.17 4.50 2.43 43.42 0.11 4.61 16 7 H 0.10 2.47 7.52 -2.39 -0.02 2.45 16 8 N -0.67 -22.61 5.32 -503.39 -2.68 -25.29 16 9 C 0.07 2.41 5.96 85.56 0.51 2.92 16 10 C 0.44 21.63 7.82 87.66 0.69 22.32 16 11 O -0.62 -35.51 15.78 -3.08 -0.05 -35.55 16 12 N -0.57 -30.07 5.29 -306.98 -1.62 -31.70 16 13 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 14 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 15 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 16 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 17 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C -0.11 -2.86 4.70 -19.86 -0.09 -2.95 16 22 C -0.13 -3.49 8.92 22.27 0.20 -3.29 16 23 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 24 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 25 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 26 C -0.12 -2.44 9.67 22.27 0.22 -2.23 16 27 C -0.11 -3.00 9.12 22.27 0.20 -2.80 16 28 C -0.14 -3.29 9.70 22.27 0.22 -3.07 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 31 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.14 2.38 8.04 -2.91 -0.02 2.35 16 34 H 0.34 12.40 5.39 -89.69 -0.48 11.92 16 35 H 0.11 3.47 8.06 -2.39 -0.02 3.45 16 36 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 37 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 38 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.11 3.06 6.05 -2.91 -0.02 3.04 16 40 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 2.28 8.04 -2.91 -0.02 2.26 16 44 H 0.11 3.17 6.81 -2.91 -0.02 3.15 16 45 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -70.36 380.00 2.68 -67.68 By element: Atomic # 1 Polarization: 49.58 SS G_CDS: -0.20 Total: 49.37 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.92 Total: -20.06 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.02 Total: -106.97 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.05 Total: -35.55 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.36 2.68 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.389 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds