Wall clock time and date at job start Tue Mar 31 2020 14:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38289 * 119.92347 * 2 1 4 4 C 1.38107 * 120.07639 * 180.02562 * 3 2 1 5 5 C 1.38925 * 119.92126 * 0.02562 * 4 3 2 6 6 N 1.39726 * 120.07458 * 179.97438 * 5 4 3 7 7 C 1.38933 * 120.00072 * 187.93877 * 6 5 4 8 8 C 1.38964 * 120.17953 * 250.96403 * 7 6 5 9 9 C 1.37957 * 120.06460 * 179.71993 * 8 7 6 10 10 C 1.38614 * 120.42097 * 0.55951 * 9 8 7 11 11 C 1.37762 * 120.35221 * 359.71848 * 10 9 8 12 12 C 1.39723 * 119.92933 * 0.02562 * 11 10 9 13 13 C 1.47439 * 120.20843 * 180.02562 * 12 11 10 14 14 O 1.21601 * 120.00208 * 238.45722 * 13 12 11 15 15 N 1.34776 * 119.99577 * 58.45670 * 13 12 11 16 16 C 1.46498 * 120.00237 * 355.71979 * 15 13 12 17 17 C 1.46507 * 119.99675 * 175.72453 * 15 13 12 18 18 C 1.50696 * 109.47146 * 89.99640 * 17 15 13 19 19 H 1.08001 * 120.00184 * 0.02562 * 18 17 15 20 20 C 1.37880 * 120.00091 * 179.97438 * 18 17 15 21 21 N 1.31514 * 119.99558 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47567 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47169 * 120.00683 * 22 20 18 25 25 H 1.48504 * 109.46898 * 239.99947 * 22 20 18 26 26 C 1.38927 * 119.85029 * 0.25151 * 5 4 3 27 27 C 1.38102 * 119.92133 * 359.47676 * 26 5 4 28 28 H 1.08996 * 109.47747 * 89.99672 * 1 2 3 29 29 H 1.09003 * 109.47276 * 209.99462 * 1 2 3 30 30 H 1.09006 * 109.47476 * 329.99624 * 1 2 3 31 31 H 1.07999 * 119.96363 * 0.02916 * 3 2 1 32 32 H 1.07994 * 120.03539 * 180.02562 * 4 3 2 33 33 H 0.97005 * 119.99786 * 8.22414 * 6 5 4 34 34 H 1.08006 * 119.96457 * 359.97438 * 8 7 6 35 35 H 1.07992 * 119.78707 * 180.29720 * 9 8 7 36 36 H 1.07997 * 119.82315 * 179.74010 * 10 9 8 37 37 H 1.07998 * 120.03290 * 180.02562 * 11 10 9 38 38 H 1.09009 * 109.46602 * 94.57686 * 16 15 13 39 39 H 1.09002 * 109.47085 * 214.56686 * 16 15 13 40 40 H 1.08996 * 109.47300 * 334.57466 * 16 15 13 41 41 H 1.08994 * 109.46943 * 209.99950 * 17 15 13 42 42 H 1.09003 * 109.46793 * 330.00005 * 17 15 13 43 43 H 0.96998 * 119.99536 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.03528 * 179.72260 * 26 5 4 45 45 H 1.07996 * 119.95786 * 180.27611 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 0.0000 -0.0016 6 7 5.6713 0.0000 -0.0027 7 6 6.3658 -1.1916 -0.1699 8 6 7.0553 -1.7541 0.8975 9 6 7.7394 -2.9404 0.7303 10 6 7.7549 -3.5739 -0.5025 11 6 7.0821 -3.0286 -1.5739 12 6 6.3800 -1.8304 -1.4197 13 6 5.6574 -1.2417 -2.5620 14 8 5.9321 -0.1199 -2.9424 15 7 4.6923 -1.9470 -3.1846 16 6 4.4254 -3.3318 -2.7879 17 6 3.9103 -1.3289 -4.2583 18 6 4.5912 -1.5732 -5.5803 19 1 5.5139 -2.1333 -5.6172 20 6 4.0356 -1.0826 -6.7430 21 7 2.9118 -0.4010 -6.6981 22 14 4.8792 -1.3860 -8.3817 23 1 6.1189 -2.1735 -8.1621 24 1 3.9657 -2.1411 -9.2765 25 1 5.2234 -0.0850 -9.0097 26 6 3.5778 -1.2022 -0.0074 27 6 2.1968 -1.1985 -0.0012 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6549 2.1328 0.0005 32 1 4.1159 2.1386 -0.0001 33 1 6.1564 0.8314 0.1175 34 1 7.0521 -1.2641 1.8600 35 1 8.2697 -3.3760 1.5641 36 1 8.2970 -4.5000 -0.6237 37 1 7.0973 -3.5268 -2.5320 38 1 3.6158 -3.3510 -2.0582 39 1 4.1379 -3.9120 -3.6648 40 1 5.3235 -3.7626 -2.3455 41 1 2.9117 -1.7651 -4.2778 42 1 3.8348 -0.2560 -4.0813 43 1 2.5211 -0.0555 -7.5160 44 1 4.1160 -2.1385 -0.0128 45 1 1.6550 -2.1328 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078263075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:25 Heat of formation + Delta-G solvation = 29.516355 kcal Electronic energy + Delta-G solvation = -27825.888096 eV Core-core repulsion = 24194.363780 eV Total energy + Delta-G solvation = -3631.524316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42019 -38.88804 -37.86821 -35.66285 -34.66424 -32.65558 -31.71002 -31.13259 -30.63476 -29.12495 -27.66067 -26.01027 -25.56645 -23.76675 -22.99087 -22.27807 -21.76665 -20.65914 -18.94843 -17.36451 -17.25132 -16.62955 -16.43840 -15.64258 -15.30845 -15.10497 -14.91837 -14.47451 -14.17133 -13.91011 -13.74717 -13.62898 -13.53118 -13.15254 -12.83344 -12.67295 -12.40792 -12.11722 -12.04873 -12.01819 -11.83197 -11.72702 -11.27961 -11.17448 -11.15086 -10.83971 -10.67945 -10.56977 -10.14111 -10.01300 -9.57040 -9.06108 -8.80818 -8.69375 -8.63485 -8.40229 -7.56401 -7.17649 -6.00815 -4.05375 1.09597 1.25102 1.72075 1.84838 3.31103 3.34547 3.38906 3.43172 3.50198 3.75746 4.03849 4.12809 4.47401 4.88529 4.93143 5.01971 5.05997 5.17922 5.29176 5.31204 5.34423 5.43900 5.45820 5.54523 5.67542 5.72091 5.82839 5.87735 5.93974 5.95423 6.01440 6.17978 6.24800 6.26426 6.27932 6.38388 6.43217 6.57554 6.65064 6.76366 6.94730 7.11200 7.14601 7.49809 7.58363 7.63855 7.81802 7.95597 8.27180 8.45717 8.93409 9.12296 9.59322 11.07127 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.005354 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.176157 B = 5228.210634 C = 7231.996340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.076 4.076 4 C -0.177 4.177 5 C 0.210 3.790 6 N -0.695 5.695 7 C 0.187 3.813 8 C -0.132 4.132 9 C -0.102 4.102 10 C -0.128 4.128 11 C -0.086 4.086 12 C -0.116 4.116 13 C 0.552 3.448 14 O -0.528 6.528 15 N -0.588 5.588 16 C 0.072 3.928 17 C 0.252 3.748 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.173 4.173 27 C -0.074 4.074 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.409 0.591 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -5.000 18.646 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C -0.095 4.095 4 C -0.199 4.199 5 C 0.110 3.890 6 N -0.322 5.322 7 C 0.092 3.908 8 C -0.152 4.152 9 C -0.121 4.121 10 C -0.146 4.146 11 C -0.105 4.105 12 C -0.121 4.121 13 C 0.337 3.663 14 O -0.405 6.405 15 N -0.320 5.320 16 C -0.072 4.072 17 C 0.133 3.867 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.195 4.195 27 C -0.093 4.093 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.246 0.754 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.573 -4.442 18.271 18.978 hybrid contribution 0.707 0.082 -1.126 1.332 sum 3.279 -4.360 17.145 17.992 Atomic orbital electron populations 1.20657 0.91655 1.01774 1.02060 1.19646 0.95779 0.93079 1.05510 1.20693 0.93198 0.97367 0.98243 1.20527 0.94412 0.96031 1.08897 1.17725 0.82356 0.94131 0.94747 1.41543 1.02686 1.07368 1.80588 1.17292 0.94503 0.87983 0.91012 1.21307 0.99695 0.96288 0.97916 1.21074 0.98651 0.94913 0.97467 1.21078 1.00101 1.00550 0.92885 1.21262 0.95903 0.93770 0.99557 1.20752 1.00592 0.96579 0.94223 1.17874 0.80574 0.85720 0.82092 1.90766 1.64888 1.19125 1.65732 1.48003 1.35216 1.12411 1.36324 1.21894 1.00583 0.84124 1.00580 1.19232 0.89905 0.94603 0.83009 1.21466 1.08713 1.34744 0.91336 0.92510 1.24929 0.94996 0.94999 0.99171 1.69951 1.18832 1.36381 1.28138 0.86464 0.79470 0.78012 0.83597 1.19842 1.20974 1.20900 1.20585 0.94368 0.96147 1.08437 1.20691 0.93231 0.97315 0.98017 0.91520 0.92226 0.92256 0.86351 0.86358 0.75364 0.85508 0.85688 0.85524 0.84912 0.93802 0.90925 0.91612 0.95057 0.94081 0.92831 0.86630 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.14 -2.01 5.88 -104.59 -0.62 -2.63 16 3 C -0.08 -1.13 9.69 -39.61 -0.38 -1.51 16 4 C -0.18 -2.74 9.90 -39.38 -0.39 -3.13 16 5 C 0.21 3.39 5.92 -83.75 -0.50 2.90 16 6 N -0.69 -10.50 4.79 -8.24 -0.04 -10.54 16 7 C 0.19 2.78 4.69 -83.58 -0.39 2.38 16 8 C -0.13 -1.53 9.96 -39.42 -0.39 -1.92 16 9 C -0.10 -1.02 10.03 -39.55 -0.40 -1.42 16 10 C -0.13 -1.38 10.02 -39.62 -0.40 -1.77 16 11 C -0.09 -1.20 7.57 -39.20 -0.30 -1.49 16 12 C -0.12 -1.97 4.36 -104.80 -0.46 -2.43 16 13 C 0.55 12.15 5.72 -12.51 -0.07 12.08 16 14 O -0.53 -14.00 16.51 5.28 0.09 -13.91 16 15 N -0.59 -12.99 2.86 -184.23 -0.53 -13.51 16 16 C 0.07 1.23 10.25 59.85 0.61 1.84 16 17 C 0.25 6.80 5.15 -5.19 -0.03 6.77 16 18 C -0.52 -15.18 9.39 -34.44 -0.32 -15.51 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 22 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 26 C -0.17 -2.75 8.76 -39.38 -0.34 -3.09 16 27 C -0.07 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.41 5.55 8.84 -40.82 -0.36 5.19 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.82 7.23 -52.49 -0.38 1.44 16 38 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 40 H 0.07 0.95 4.13 -51.93 -0.21 0.73 16 41 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.04 1.27 7.48 -51.93 -0.39 0.88 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.12 1.80 6.71 -52.49 -0.35 1.44 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -34.92 378.24 -9.86 -44.77 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.30 Total: 6.19 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -4.49 Total: -9.61 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.17 Total: -50.36 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.92 -9.86 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078263075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.288 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds