Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38257 * 119.99575 * 2 1 4 4 C 1.38219 * 119.99459 * 180.27285 * 3 2 1 5 5 C 1.38251 * 120.00154 * 359.74490 * 4 3 2 6 6 C 1.38214 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.38208 * 119.99947 * 179.74272 * 2 1 3 8 8 C 1.50698 * 120.00160 * 0.02562 * 7 2 1 9 9 C 1.50698 * 109.47372 * 84.72457 * 8 7 2 10 10 O 1.21274 * 119.99807 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99879 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99911 * 359.97438 * 11 9 8 13 13 C 1.50699 * 109.47297 * 269.99914 * 12 11 9 14 14 H 1.07997 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00236 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46805 * 90.00583 * 17 15 13 19 19 H 1.48501 * 109.47048 * 210.00173 * 17 15 13 20 20 H 1.48499 * 109.47121 * 330.00285 * 17 15 13 21 21 C 1.46493 * 119.99906 * 180.02562 * 11 9 8 22 22 C 1.50706 * 109.47190 * 269.99577 * 21 11 9 23 23 C 1.38675 * 120.41529 * 89.99861 * 22 21 11 24 24 C 1.38631 * 118.41792 * 179.97438 * 23 22 21 25 25 C 1.38221 * 119.16077 * 0.25627 * 24 23 22 26 26 N 1.31860 * 120.76509 * 359.49797 * 25 24 23 27 27 C 1.31882 * 121.72556 * 0.49011 * 26 25 24 28 28 H 1.08993 * 109.47019 * 270.25476 * 1 2 3 29 29 H 1.08997 * 109.47028 * 30.25594 * 1 2 3 30 30 H 1.09001 * 109.46851 * 150.25426 * 1 2 3 31 31 H 1.08000 * 120.00769 * 0.04248 * 3 2 1 32 32 H 1.08001 * 119.99721 * 179.76658 * 4 3 2 33 33 H 1.08003 * 120.00520 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99871 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46949 * 324.72251 * 8 7 2 36 36 H 1.09010 * 109.46946 * 204.72787 * 8 7 2 37 37 H 1.08994 * 109.47138 * 30.00769 * 12 11 9 38 38 H 1.08998 * 109.46370 * 150.00287 * 12 11 9 39 39 H 0.97002 * 120.00259 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.47517 * 149.99664 * 21 11 9 41 41 H 1.08998 * 109.47567 * 29.99513 * 21 11 9 42 42 H 1.07998 * 120.79161 * 359.96013 * 23 22 21 43 43 H 1.08002 * 120.41548 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.62066 * 179.74470 * 25 24 23 45 45 H 1.07993 * 119.62126 * 179.75488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0057 5 6 4.2717 0.0001 -0.0061 6 6 3.5807 -1.1969 -0.0002 7 6 2.1981 -1.1969 0.0054 8 6 1.4447 -2.5020 0.0107 9 6 1.0809 -2.8778 -1.4027 10 8 1.4023 -2.1571 -2.3235 11 7 0.3984 -4.0148 -1.6432 12 6 0.0107 -4.8857 -0.5307 13 6 1.1027 -5.8927 -0.2767 14 1 1.9964 -5.8845 -0.8831 15 6 0.9614 -6.8237 0.7303 16 7 -0.1267 -6.8333 1.4690 17 14 2.3154 -8.0714 1.0455 18 1 3.2786 -7.5182 2.0311 19 1 1.7210 -9.3218 1.5825 20 1 3.0229 -8.3661 -0.2264 21 6 0.0453 -4.3805 -3.0171 22 6 -1.3009 -3.7973 -3.3619 23 6 -1.3953 -2.5329 -3.9236 24 6 -2.6544 -2.0372 -4.2249 25 6 -3.7662 -2.8119 -3.9524 26 7 -3.6383 -4.0123 -3.4219 27 6 -2.4567 -4.5160 -3.1227 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1327 -0.0095 33 1 5.3518 0.0000 -0.0109 34 1 4.1207 -2.1322 -0.0009 35 1 0.5362 -2.3946 0.6034 36 1 2.0713 -3.2816 0.4441 37 1 -0.1442 -4.2840 0.3648 38 1 -0.9129 -5.4071 -0.7823 39 1 -0.2263 -7.4886 2.1773 40 1 0.0042 -5.4662 -3.1051 41 1 0.7971 -3.9886 -3.7021 42 1 -0.5091 -1.9483 -4.1214 43 1 -2.7654 -1.0562 -4.6628 44 1 -4.7509 -2.4313 -4.1803 45 1 -2.3917 -5.5013 -2.6856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078939071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = 14.380148 kcal Electronic energy + Delta-G solvation = -27306.182126 eV Core-core repulsion = 23674.001455 eV Total energy + Delta-G solvation = -3632.180671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15537 -39.60209 -38.37810 -35.24465 -33.33104 -32.84941 -32.17066 -31.85669 -31.24521 -28.06938 -27.46383 -26.58779 -25.37435 -23.43340 -22.85669 -22.17333 -21.64864 -20.58422 -18.40065 -16.98161 -16.69801 -16.42182 -16.19409 -15.74045 -15.55255 -15.40217 -15.03153 -14.57484 -14.44226 -14.01044 -13.57598 -13.43323 -13.09624 -12.93131 -12.76415 -12.68475 -12.56809 -12.38657 -12.06754 -11.88271 -11.74111 -11.65659 -11.39139 -11.19516 -11.00210 -10.85041 -10.68157 -10.59054 -10.25436 -9.87140 -9.60079 -9.26010 -9.22758 -8.78651 -8.63171 -8.50190 -8.26252 -7.83693 -6.24132 -4.32525 1.29394 1.51763 1.61507 1.65416 3.19019 3.26877 3.28199 3.35136 3.73661 4.02894 4.23117 4.32837 4.66510 5.02057 5.02357 5.03300 5.08967 5.16405 5.19998 5.22897 5.25380 5.30103 5.46335 5.50846 5.62998 5.68392 5.80491 5.83997 5.88956 5.98455 6.03423 6.06371 6.13433 6.16968 6.34038 6.35352 6.43887 6.58231 6.66121 6.70432 6.73747 6.93260 6.96252 7.10542 7.27221 7.43258 7.69915 7.97983 8.18218 8.23074 8.72363 8.93893 9.36226 10.82403 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.006928 B = 0.006092 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4040.683405 B = 4594.955771 C = 7834.035205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 C -0.124 4.124 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.104 4.104 7 C -0.051 4.051 8 C -0.102 4.102 9 C 0.524 3.476 10 O -0.564 6.564 11 N -0.592 5.592 12 C 0.237 3.763 13 C -0.541 4.541 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.161 3.839 22 C -0.144 4.144 23 C -0.056 4.056 24 C -0.182 4.182 25 C 0.089 3.911 26 N -0.489 5.489 27 C 0.114 3.886 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 11.601 -4.893 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.122 4.122 7 C -0.052 4.052 8 C -0.141 4.141 9 C 0.312 3.688 10 O -0.445 6.445 11 N -0.322 5.322 12 C 0.117 3.883 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.037 3.963 22 C -0.148 4.148 23 C -0.082 4.082 24 C -0.201 4.201 25 C -0.068 4.068 26 N -0.198 5.198 27 C -0.043 4.043 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.608 11.341 -5.033 12.423 hybrid contribution 1.437 -0.326 0.212 1.488 sum 0.829 11.015 -4.821 12.053 Atomic orbital electron populations 1.20798 0.91632 1.02798 1.01885 1.19692 0.95797 0.92606 0.98948 1.20904 0.94226 0.97085 1.02003 1.21001 0.94259 0.97697 1.01440 1.21016 0.99446 0.92552 1.01585 1.21035 0.93638 0.98159 0.99344 1.19374 0.93484 0.93681 0.98638 1.20694 1.02048 0.95572 0.95793 1.20283 0.77268 0.80599 0.90612 1.90593 1.55713 1.52020 1.46140 1.48253 1.54081 1.22341 1.07542 1.19473 0.96373 0.88968 0.83442 1.21468 1.04117 1.15194 1.17213 0.92000 1.24933 0.95794 0.97374 0.95537 1.69921 1.26293 1.36015 1.20404 0.86533 0.81811 0.80722 0.78658 1.20451 1.21045 1.19769 1.20118 0.91268 1.00054 0.84874 1.21447 0.97968 0.95864 0.99475 1.21665 0.98042 0.94534 0.93989 1.22099 0.93679 1.01370 1.02991 1.22689 0.98627 0.90305 0.95187 1.67705 1.27393 1.13251 1.11429 1.22807 0.86922 0.99917 0.94630 0.91295 0.91883 0.91481 0.86601 0.86668 0.86528 0.86136 0.88364 0.86939 0.94390 0.94536 0.92420 0.89108 0.89880 0.84500 0.85327 0.83334 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.22 36.01 0.33 -1.27 16 2 C -0.07 -1.09 5.88 -104.62 -0.62 -1.70 16 3 C -0.12 -1.70 9.70 -39.58 -0.38 -2.08 16 4 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16 5 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 6 C -0.10 -1.63 9.68 -39.58 -0.38 -2.02 16 7 C -0.05 -0.86 4.37 -104.63 -0.46 -1.32 16 8 C -0.10 -1.82 3.70 -29.04 -0.11 -1.93 16 9 C 0.52 10.23 6.87 -10.99 -0.08 10.16 16 10 O -0.56 -11.76 15.25 5.56 0.08 -11.67 16 11 N -0.59 -11.61 2.44 -176.43 -0.43 -12.04 16 12 C 0.24 5.28 4.97 -5.19 -0.03 5.25 16 13 C -0.54 -13.28 9.28 -34.44 -0.32 -13.60 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 17 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.16 2.80 5.56 -5.19 -0.03 2.77 16 22 C -0.14 -2.35 5.48 -104.48 -0.57 -2.92 16 23 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 24 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 25 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 26 N -0.49 -7.93 10.36 -13.25 -0.14 -8.07 16 27 C 0.11 1.88 10.86 -17.55 -0.19 1.69 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.07 1.06 6.15 -51.93 -0.32 0.74 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.10 1.71 6.26 -51.93 -0.33 1.38 16 36 H 0.11 2.11 7.92 -51.92 -0.41 1.70 16 37 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 38 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.09 1.53 8.02 -51.92 -0.42 1.12 16 41 H 0.08 1.44 7.37 -51.93 -0.38 1.05 16 42 H 0.14 2.11 7.69 -52.49 -0.40 1.71 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -28.78 381.15 -10.09 -38.87 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.36 Total: 7.75 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -4.70 Total: -12.53 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.17 Total: -42.99 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.78 -10.09 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078939071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.246 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds