Wall clock time and date at job start Tue Mar 31 2020 14:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38257 * 119.99575 * 2 1 4 4 C 1.38219 * 119.99459 * 180.27285 * 3 2 1 5 5 C 1.38251 * 120.00154 * 359.74490 * 4 3 2 6 6 C 1.38214 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.38208 * 119.99947 * 179.74272 * 2 1 3 8 8 C 1.50698 * 120.00160 * 0.02562 * 7 2 1 9 9 C 1.50698 * 109.47372 * 84.72457 * 8 7 2 10 10 O 1.21274 * 119.99807 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99879 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99911 * 359.97438 * 11 9 8 13 13 C 1.50699 * 109.47297 * 269.99914 * 12 11 9 14 14 H 1.07997 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00236 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46805 * 90.00583 * 17 15 13 19 19 H 1.48501 * 109.47048 * 210.00173 * 17 15 13 20 20 H 1.48499 * 109.47121 * 330.00285 * 17 15 13 21 21 C 1.46493 * 119.99906 * 180.02562 * 11 9 8 22 22 C 1.50706 * 109.47190 * 269.99577 * 21 11 9 23 23 C 1.38675 * 120.41529 * 89.99861 * 22 21 11 24 24 C 1.38631 * 118.41792 * 179.97438 * 23 22 21 25 25 C 1.38221 * 119.16077 * 0.25627 * 24 23 22 26 26 N 1.31860 * 120.76509 * 359.49797 * 25 24 23 27 27 C 1.31882 * 121.72556 * 0.49011 * 26 25 24 28 28 H 1.08993 * 109.47019 * 270.25476 * 1 2 3 29 29 H 1.08997 * 109.47028 * 30.25594 * 1 2 3 30 30 H 1.09001 * 109.46851 * 150.25426 * 1 2 3 31 31 H 1.08000 * 120.00769 * 0.04248 * 3 2 1 32 32 H 1.08001 * 119.99721 * 179.76658 * 4 3 2 33 33 H 1.08003 * 120.00520 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99871 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46949 * 324.72251 * 8 7 2 36 36 H 1.09010 * 109.46946 * 204.72787 * 8 7 2 37 37 H 1.08994 * 109.47138 * 30.00769 * 12 11 9 38 38 H 1.08998 * 109.46370 * 150.00287 * 12 11 9 39 39 H 0.97002 * 120.00259 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.47517 * 149.99664 * 21 11 9 41 41 H 1.08998 * 109.47567 * 29.99513 * 21 11 9 42 42 H 1.07998 * 120.79161 * 359.96013 * 23 22 21 43 43 H 1.08002 * 120.41548 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.62066 * 179.74470 * 25 24 23 45 45 H 1.07993 * 119.62126 * 179.75488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0057 5 6 4.2717 0.0001 -0.0061 6 6 3.5807 -1.1969 -0.0002 7 6 2.1981 -1.1969 0.0054 8 6 1.4447 -2.5020 0.0107 9 6 1.0809 -2.8778 -1.4027 10 8 1.4023 -2.1571 -2.3235 11 7 0.3984 -4.0148 -1.6432 12 6 0.0107 -4.8857 -0.5307 13 6 1.1027 -5.8927 -0.2767 14 1 1.9964 -5.8845 -0.8831 15 6 0.9614 -6.8237 0.7303 16 7 -0.1267 -6.8333 1.4690 17 14 2.3154 -8.0714 1.0455 18 1 3.2786 -7.5182 2.0311 19 1 1.7210 -9.3218 1.5825 20 1 3.0229 -8.3661 -0.2264 21 6 0.0453 -4.3805 -3.0171 22 6 -1.3009 -3.7973 -3.3619 23 6 -1.3953 -2.5329 -3.9236 24 6 -2.6544 -2.0372 -4.2249 25 6 -3.7662 -2.8119 -3.9524 26 7 -3.6383 -4.0123 -3.4219 27 6 -2.4567 -4.5160 -3.1227 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1327 -0.0095 33 1 5.3518 0.0000 -0.0109 34 1 4.1207 -2.1322 -0.0009 35 1 0.5362 -2.3946 0.6034 36 1 2.0713 -3.2816 0.4441 37 1 -0.1442 -4.2840 0.3648 38 1 -0.9129 -5.4071 -0.7823 39 1 -0.2263 -7.4886 2.1773 40 1 0.0042 -5.4662 -3.1051 41 1 0.7971 -3.9886 -3.7021 42 1 -0.5091 -1.9483 -4.1214 43 1 -2.7654 -1.0562 -4.6628 44 1 -4.7509 -2.4313 -4.1803 45 1 -2.3917 -5.5013 -2.6856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078939071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:12 Heat of formation + Delta-G solvation = 1.602875 kcal Electronic energy + Delta-G solvation = -27306.736190 eV Core-core repulsion = 23674.001455 eV Total energy + Delta-G solvation = -3632.734736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49240 -40.82428 -39.70204 -36.85972 -34.91293 -34.22798 -33.56170 -33.02604 -32.48544 -29.44658 -29.14240 -27.76512 -26.73030 -24.99780 -24.33654 -23.37439 -22.81897 -21.74428 -19.93561 -18.68966 -18.14579 -17.82197 -17.47468 -17.02321 -16.92454 -16.79162 -16.27361 -16.21696 -15.69424 -15.32885 -14.86777 -14.62431 -14.37731 -14.26409 -14.09582 -13.98283 -13.93335 -13.77802 -13.46671 -13.28975 -13.17453 -12.88403 -12.83084 -12.73243 -12.70016 -12.44065 -12.10385 -11.80249 -11.78728 -11.70153 -10.94189 -10.71618 -10.55998 -10.46193 -9.98607 -9.64156 -9.49207 -9.41444 -8.20360 -6.35062 0.11731 0.32780 0.48854 0.54343 1.41421 1.44124 1.52662 1.75786 2.28756 2.44171 2.88516 2.99724 3.10459 3.53787 3.77465 3.80915 3.87691 3.94099 4.03202 4.09572 4.11513 4.13535 4.21528 4.37355 4.45099 4.48387 4.66158 4.68580 4.73194 4.75452 4.77508 4.85267 4.86525 4.88922 4.94579 5.16087 5.19645 5.23956 5.31752 5.37802 5.61425 5.63830 5.65803 5.77449 5.79861 5.80918 6.04809 6.18883 6.53900 6.80202 7.00922 7.29639 7.40704 8.85171 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.006928 B = 0.006092 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4040.683405 B = 4594.955771 C = 7834.035205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.093 4.093 9 C 0.524 3.476 10 O -0.576 6.576 11 N -0.594 5.594 12 C 0.255 3.745 13 C -0.545 4.545 14 H 0.055 0.945 15 C 0.025 3.975 16 N -0.918 5.918 17 Si 0.953 3.047 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.162 3.838 22 C -0.154 4.154 23 C -0.063 4.063 24 C -0.168 4.168 25 C 0.090 3.910 26 N -0.510 5.510 27 C 0.101 3.899 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.026 0.974 38 H 0.022 0.978 39 H 0.268 0.732 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.166 0.834 44 H 0.186 0.814 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 13.885 -5.465 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.143 4.143 7 C -0.078 4.078 8 C -0.132 4.132 9 C 0.313 3.687 10 O -0.457 6.457 11 N -0.324 5.324 12 C 0.134 3.866 13 C -0.584 4.584 14 H 0.073 0.927 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.039 3.961 22 C -0.158 4.158 23 C -0.090 4.090 24 C -0.188 4.188 25 C -0.067 4.067 26 N -0.219 5.219 27 C -0.056 4.056 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.150 0.850 43 H 0.183 0.817 44 H 0.203 0.797 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.323 13.623 -5.620 14.740 hybrid contribution 1.324 -0.929 0.332 1.651 sum 1.001 12.694 -5.288 13.788 Atomic orbital electron populations 1.20777 0.91029 1.02392 1.02525 1.19932 0.96526 0.92872 0.99311 1.21272 0.94873 0.97387 1.00899 1.21444 0.94250 0.98751 0.99512 1.21346 1.00833 0.92049 1.00628 1.21185 0.93526 0.99170 1.00461 1.19389 0.94040 0.93415 1.00934 1.20569 1.01830 0.96289 0.94547 1.20530 0.76774 0.80211 0.91177 1.90564 1.56205 1.52274 1.46684 1.48212 1.54217 1.22117 1.07838 1.19071 0.95162 0.88535 0.83809 1.21649 1.04205 1.15597 1.16944 0.92721 1.25605 0.97606 0.98992 0.95386 1.70013 1.27843 1.36863 1.21001 0.85624 0.79409 0.78596 0.78492 1.19997 1.20797 1.19506 1.20148 0.92257 1.00110 0.83624 1.21263 0.96980 0.96716 1.00797 1.21732 0.99083 0.93979 0.94213 1.22452 0.92318 1.02544 1.01443 1.23339 1.00523 0.89245 0.93605 1.67717 1.27055 1.14809 1.12310 1.22705 0.87377 0.99976 0.95516 0.90182 0.89995 0.94000 0.83829 0.83234 0.84036 0.86625 0.88582 0.88578 0.95638 0.95953 0.92340 0.89319 0.89945 0.84954 0.81676 0.79675 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 9.22 71.24 0.66 -2.35 16 2 C -0.09 -2.59 5.88 -19.86 -0.12 -2.71 16 3 C -0.13 -3.13 9.70 22.27 0.22 -2.92 16 4 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 5 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 6 C -0.13 -3.96 9.68 22.27 0.22 -3.74 16 7 C -0.08 -2.63 4.37 -19.87 -0.09 -2.72 16 8 C -0.09 -3.50 3.70 29.10 0.11 -3.39 16 9 C 0.52 21.23 6.87 87.66 0.60 21.84 16 10 O -0.58 -24.50 15.25 -3.01 -0.05 -24.55 16 11 N -0.59 -24.35 2.44 -830.50 -2.03 -26.37 16 12 C 0.26 11.91 4.97 85.63 0.43 12.33 16 13 C -0.55 -27.60 9.28 25.60 0.24 -27.36 16 14 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 15 C 0.02 1.28 5.46 84.65 0.46 1.74 16 16 N -0.92 -49.90 13.29 21.45 0.28 -49.61 16 17 Si 0.95 41.17 29.54 68.60 2.03 43.20 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 C 0.16 5.87 5.56 85.64 0.48 6.35 16 22 C -0.15 -5.13 5.48 -19.77 -0.11 -5.24 16 23 C -0.06 -1.88 9.86 22.47 0.22 -1.66 16 24 C -0.17 -3.99 10.11 22.36 0.23 -3.76 16 25 C 0.09 2.24 11.18 84.68 0.95 3.19 16 26 N -0.51 -16.26 10.36 -195.85 -2.03 -18.29 16 27 C 0.10 3.40 10.86 84.67 0.92 4.32 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 30 H 0.04 1.33 6.15 -2.39 -0.01 1.32 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.10 3.56 6.26 -2.39 -0.01 3.54 16 36 H 0.10 3.85 7.92 -2.38 -0.02 3.83 16 37 H 0.03 1.25 6.44 -2.39 -0.02 1.24 16 38 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 39 H 0.27 13.85 8.31 -92.71 -0.77 13.07 16 40 H 0.09 3.17 8.02 -2.38 -0.02 3.15 16 41 H 0.08 2.96 7.37 -2.39 -0.02 2.94 16 42 H 0.13 4.04 7.69 -2.91 -0.02 4.02 16 43 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 45 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -62.48 381.15 5.04 -57.44 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.98 Total: 29.96 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.85 Total: -11.78 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -3.77 Total: -94.27 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -62.48 5.04 -57.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078939071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.040 kcal (2) G-P(sol) polarization free energy of solvation -62.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds