Wall clock time and date at job start Tue Mar 31 2020 14:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 119.99437 * 2 1 4 4 C 1.38239 * 119.99452 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99981 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00087 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46826 * 340.00375 * 6 5 4 8 8 C 1.53003 * 109.46881 * 99.99783 * 6 5 4 9 9 N 1.46497 * 109.47206 * 219.99941 * 6 5 4 10 10 C 1.34778 * 119.99742 * 155.00041 * 9 6 5 11 11 O 1.21579 * 120.00038 * 0.02562 * 10 9 6 12 12 N 1.34778 * 120.00121 * 180.02562 * 10 9 6 13 13 C 1.39237 * 120.00467 * 184.03028 * 12 10 9 14 14 C 1.39480 * 119.83240 * 324.49786 * 13 12 10 15 15 C 1.36371 * 120.17004 * 179.71825 * 14 13 12 16 16 C 1.40868 * 119.82709 * 0.54850 * 15 14 13 17 17 C 1.41163 * 120.16436 * 179.69908 * 16 15 14 18 18 H 1.07998 * 119.99836 * 214.80597 * 17 16 15 19 19 C 1.39890 * 119.99575 * 34.80923 * 17 16 15 20 20 N 1.30883 * 120.00575 * 355.55291 * 19 17 16 21 21 Si 1.86806 * 119.99577 * 175.55815 * 19 17 16 22 22 H 1.48497 * 109.47174 * 89.99902 * 21 19 17 23 23 H 1.48498 * 109.46920 * 210.00043 * 21 19 17 24 24 H 1.48503 * 109.47060 * 329.99857 * 21 19 17 25 25 C 1.40861 * 119.67409 * 359.72803 * 16 15 14 26 26 C 1.36381 * 119.82738 * 359.97438 * 25 16 15 27 27 C 1.38233 * 120.00141 * 0.25556 * 5 4 3 28 28 C 1.38229 * 119.99870 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47469 * 89.99605 * 1 2 3 30 30 H 1.09000 * 109.47140 * 210.00103 * 1 2 3 31 31 H 1.09003 * 109.47062 * 329.99462 * 1 2 3 32 32 H 1.07993 * 120.00616 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.00163 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47092 * 300.00135 * 8 6 5 35 35 H 1.08998 * 109.47206 * 60.00752 * 8 6 5 36 36 H 1.09000 * 109.46606 * 179.97438 * 8 6 5 37 37 H 0.97000 * 120.00177 * 335.00136 * 9 6 5 38 38 H 0.97008 * 119.99597 * 4.30852 * 12 10 9 39 39 H 1.08006 * 119.91440 * 359.97438 * 14 13 12 40 40 H 1.08006 * 120.08717 * 180.27397 * 15 14 13 41 41 H 0.96997 * 120.00231 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.09265 * 179.97438 * 25 16 15 43 43 H 1.08001 * 119.91946 * 179.97438 * 26 25 16 44 44 H 1.07997 * 120.00367 * 179.73281 * 27 5 4 45 45 H 1.08004 * 120.00095 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1417 0.9659 -0.3541 8 6 6.2897 -0.2511 1.4174 9 7 6.2663 -1.0576 -0.8914 10 6 7.4879 -0.9569 -1.4519 11 8 8.1853 0.0116 -1.2196 12 7 7.9364 -1.9296 -2.2699 13 6 9.2296 -1.8674 -2.7821 14 6 9.7864 -0.6319 -3.1123 15 6 11.0545 -0.5624 -3.6090 16 6 11.7982 -1.7436 -3.7993 17 6 13.1091 -1.6805 -4.3191 18 1 13.4706 -2.4636 -4.9689 19 6 13.9399 -0.6035 -3.9922 20 7 13.4745 0.3885 -3.2764 21 14 15.7137 -0.5811 -4.5777 22 1 15.7891 0.0844 -5.9031 23 1 16.5478 0.1645 -3.6012 24 1 16.2142 -1.9744 -4.6941 25 6 11.2270 -2.9881 -3.4690 26 6 9.9599 -3.0412 -2.9674 27 6 3.5805 -1.1971 -0.0075 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1324 0.0004 33 1 4.1205 2.1325 -0.0010 34 1 5.9269 0.5359 2.0785 35 1 5.9267 -1.2169 1.7687 36 1 7.3797 -0.2515 1.4164 37 1 5.7101 -1.8305 -1.0765 38 1 7.3567 -2.6711 -2.5050 39 1 9.2133 0.2725 -2.9702 40 1 11.4860 0.3953 -3.8601 41 1 14.0507 1.1350 -3.0495 42 1 11.7909 -3.8979 -3.6125 43 1 9.5203 -3.9946 -2.7140 44 1 4.1205 -2.1324 -0.0127 45 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079648847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:21 Heat of formation + Delta-G solvation = 11.733134 kcal Electronic energy + Delta-G solvation = -25723.574446 eV Core-core repulsion = 22091.278991 eV Total energy + Delta-G solvation = -3632.295455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31655 -39.43334 -37.48783 -35.77974 -34.28432 -33.02207 -32.44892 -31.19665 -30.28689 -29.40779 -28.56524 -26.96063 -24.91930 -23.23381 -23.01032 -21.52489 -21.07203 -20.37158 -19.93023 -18.12771 -17.23659 -17.01012 -15.92185 -15.75654 -15.33590 -15.13974 -14.84767 -14.54665 -14.14674 -14.03803 -13.87648 -13.65476 -13.51420 -13.12511 -12.87126 -12.62680 -12.54644 -12.32048 -12.03399 -12.01123 -11.72914 -11.59688 -11.38838 -11.23541 -11.12513 -10.95207 -10.85873 -10.44166 -9.93241 -9.82877 -9.54465 -9.18009 -9.09576 -8.89521 -8.74744 -8.67773 -7.44766 -6.80300 -6.52734 -4.26469 1.03619 1.14797 2.74043 3.05061 3.11471 3.14473 3.16327 3.23517 3.50147 3.77326 4.03823 4.40974 4.53470 4.64900 4.66699 4.75393 4.79350 4.97188 5.17671 5.24842 5.27348 5.31019 5.42626 5.47145 5.64722 5.72288 5.75617 5.81902 5.90455 6.11825 6.18828 6.22046 6.31911 6.32235 6.44685 6.68826 6.73674 6.87771 6.91809 7.11387 7.21764 7.35264 7.45301 7.71871 7.90052 8.09186 8.16071 8.36689 8.53576 8.74576 9.00072 9.00971 9.17257 10.38269 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.002118 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.291776 B =13218.639548 C =13606.801430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.103 4.103 5 C -0.090 4.090 6 C 0.203 3.797 7 H 0.096 0.904 8 C -0.158 4.158 9 N -0.747 5.747 10 C 0.696 3.304 11 O -0.573 6.573 12 N -0.669 5.669 13 C 0.026 3.974 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.097 3.903 17 C -0.464 4.464 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.809 5.809 21 Si 0.914 3.086 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.203 4.203 26 C -0.117 4.117 27 C -0.109 4.109 28 C -0.118 4.118 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.277 0.723 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.475 -1.298 7.130 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.091 4.091 6 C 0.097 3.903 7 H 0.114 0.886 8 C -0.216 4.216 9 N -0.405 5.405 10 C 0.396 3.604 11 O -0.449 6.449 12 N -0.315 5.315 13 C -0.067 4.067 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.095 3.905 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.436 5.436 21 Si 0.739 3.261 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.223 4.223 26 C -0.138 4.138 27 C -0.128 4.128 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.224 0.776 38 H 0.223 0.777 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.734 -0.163 7.470 22.982 hybrid contribution 0.270 -0.772 -0.246 0.855 sum -21.463 -0.935 7.223 22.665 Atomic orbital electron populations 1.20792 0.91265 1.02713 1.02335 1.19940 0.96070 0.93271 0.99787 1.21019 0.94020 0.97589 1.00928 1.21030 0.94152 0.97602 0.99398 1.20007 0.95002 0.93662 1.00446 1.19547 0.88112 0.92444 0.90151 0.88574 1.22185 1.02593 1.01686 0.95178 1.45276 1.17759 1.25276 1.52151 1.16005 0.81368 0.83965 0.79027 1.90933 1.56310 1.31849 1.65807 1.42107 1.14758 1.25670 1.48940 1.17081 0.84632 0.94643 1.10296 1.20672 0.96650 0.95386 0.98716 1.21307 0.92058 0.99988 1.02910 1.17721 0.92490 0.90710 0.89600 1.19450 0.97185 1.05884 1.26987 0.90740 1.25880 1.00905 0.94337 0.93528 1.69795 1.37076 1.07084 1.29663 0.86223 0.81682 0.79201 0.78970 1.19592 1.20361 1.18820 1.20664 0.95550 0.97586 1.08503 1.20049 0.95055 0.94728 1.03925 1.20913 0.94145 0.97534 1.00188 1.20998 0.94008 0.97564 1.01029 0.91178 0.91595 0.91584 0.85978 0.85640 0.91776 0.92609 0.91178 0.77566 0.77725 0.87387 0.85208 0.91164 0.88606 0.89270 0.86120 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.74 5.88 -104.63 -0.62 -1.35 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 4 C -0.10 -0.99 9.67 -39.58 -0.38 -1.38 16 5 C -0.09 -0.93 4.96 -104.62 -0.52 -1.45 16 6 C 0.20 2.49 2.78 -69.08 -0.19 2.30 16 7 H 0.10 1.36 7.44 -51.93 -0.39 0.98 16 8 C -0.16 -1.85 9.46 37.16 0.35 -1.50 16 9 N -0.75 -9.85 5.03 -59.81 -0.30 -10.15 16 10 C 0.70 12.71 8.36 -86.92 -0.73 11.98 16 11 O -0.57 -13.09 13.44 5.30 0.07 -13.02 16 12 N -0.67 -12.02 5.31 -14.10 -0.07 -12.10 16 13 C 0.03 0.59 6.30 -83.57 -0.53 0.06 16 14 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 15 C -0.14 -3.91 8.62 -39.26 -0.34 -4.25 16 16 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 17 C -0.46 -12.60 9.02 -37.85 -0.34 -12.95 16 18 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 19 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 20 N -0.81 -22.02 10.60 55.54 0.59 -21.43 16 21 Si 0.91 19.48 29.56 -169.99 -5.03 14.45 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.20 -4.99 9.74 -39.26 -0.38 -5.37 16 26 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 27 C -0.11 -0.99 9.06 -39.58 -0.36 -1.35 16 28 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.39 3.99 6.87 -40.82 -0.28 3.71 16 38 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16 39 H 0.11 2.79 6.25 -52.48 -0.33 2.47 16 40 H 0.13 3.72 6.13 -52.48 -0.32 3.40 16 41 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.12 0.92 6.90 -52.49 -0.36 0.56 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -32.09 375.57 -11.17 -43.26 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.23 Total: 13.58 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -5.86 Total: -20.25 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.21 Total: -43.69 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.09 -11.17 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079648847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.995 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds