Wall clock time and date at job start Tue Mar 31 2020 14:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 119.99437 * 2 1 4 4 C 1.38239 * 119.99452 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99981 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00087 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46826 * 340.00375 * 6 5 4 8 8 C 1.53003 * 109.46881 * 99.99783 * 6 5 4 9 9 N 1.46497 * 109.47206 * 219.99941 * 6 5 4 10 10 C 1.34778 * 119.99742 * 155.00041 * 9 6 5 11 11 O 1.21579 * 120.00038 * 0.02562 * 10 9 6 12 12 N 1.34778 * 120.00121 * 180.02562 * 10 9 6 13 13 C 1.39237 * 120.00467 * 184.03028 * 12 10 9 14 14 C 1.39480 * 119.83240 * 324.49786 * 13 12 10 15 15 C 1.36371 * 120.17004 * 179.71825 * 14 13 12 16 16 C 1.40868 * 119.82709 * 0.54850 * 15 14 13 17 17 C 1.41163 * 120.16436 * 179.69908 * 16 15 14 18 18 H 1.07998 * 119.99836 * 214.80597 * 17 16 15 19 19 C 1.39890 * 119.99575 * 34.80923 * 17 16 15 20 20 N 1.30883 * 120.00575 * 355.55291 * 19 17 16 21 21 Si 1.86806 * 119.99577 * 175.55815 * 19 17 16 22 22 H 1.48497 * 109.47174 * 89.99902 * 21 19 17 23 23 H 1.48498 * 109.46920 * 210.00043 * 21 19 17 24 24 H 1.48503 * 109.47060 * 329.99857 * 21 19 17 25 25 C 1.40861 * 119.67409 * 359.72803 * 16 15 14 26 26 C 1.36381 * 119.82738 * 359.97438 * 25 16 15 27 27 C 1.38233 * 120.00141 * 0.25556 * 5 4 3 28 28 C 1.38229 * 119.99870 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47469 * 89.99605 * 1 2 3 30 30 H 1.09000 * 109.47140 * 210.00103 * 1 2 3 31 31 H 1.09003 * 109.47062 * 329.99462 * 1 2 3 32 32 H 1.07993 * 120.00616 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.00163 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47092 * 300.00135 * 8 6 5 35 35 H 1.08998 * 109.47206 * 60.00752 * 8 6 5 36 36 H 1.09000 * 109.46606 * 179.97438 * 8 6 5 37 37 H 0.97000 * 120.00177 * 335.00136 * 9 6 5 38 38 H 0.97008 * 119.99597 * 4.30852 * 12 10 9 39 39 H 1.08006 * 119.91440 * 359.97438 * 14 13 12 40 40 H 1.08006 * 120.08717 * 180.27397 * 15 14 13 41 41 H 0.96997 * 120.00231 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.09265 * 179.97438 * 25 16 15 43 43 H 1.08001 * 119.91946 * 179.97438 * 26 25 16 44 44 H 1.07997 * 120.00367 * 179.73281 * 27 5 4 45 45 H 1.08004 * 120.00095 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1417 0.9659 -0.3541 8 6 6.2897 -0.2511 1.4174 9 7 6.2663 -1.0576 -0.8914 10 6 7.4879 -0.9569 -1.4519 11 8 8.1853 0.0116 -1.2196 12 7 7.9364 -1.9296 -2.2699 13 6 9.2296 -1.8674 -2.7821 14 6 9.7864 -0.6319 -3.1123 15 6 11.0545 -0.5624 -3.6090 16 6 11.7982 -1.7436 -3.7993 17 6 13.1091 -1.6805 -4.3191 18 1 13.4706 -2.4636 -4.9689 19 6 13.9399 -0.6035 -3.9922 20 7 13.4745 0.3885 -3.2764 21 14 15.7137 -0.5811 -4.5777 22 1 15.7891 0.0844 -5.9031 23 1 16.5478 0.1645 -3.6012 24 1 16.2142 -1.9744 -4.6941 25 6 11.2270 -2.9881 -3.4690 26 6 9.9599 -3.0412 -2.9674 27 6 3.5805 -1.1971 -0.0075 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1324 0.0004 33 1 4.1205 2.1325 -0.0010 34 1 5.9269 0.5359 2.0785 35 1 5.9267 -1.2169 1.7687 36 1 7.3797 -0.2515 1.4164 37 1 5.7101 -1.8305 -1.0765 38 1 7.3567 -2.6711 -2.5050 39 1 9.2133 0.2725 -2.9702 40 1 11.4860 0.3953 -3.8601 41 1 14.0507 1.1350 -3.0495 42 1 11.7909 -3.8979 -3.6125 43 1 9.5203 -3.9946 -2.7140 44 1 4.1205 -2.1324 -0.0127 45 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079648847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:20 Heat of formation + Delta-G solvation = -6.067785 kcal Electronic energy + Delta-G solvation = -25724.346351 eV Core-core repulsion = 22091.278991 eV Total energy + Delta-G solvation = -3633.067360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59279 -40.44310 -39.20865 -36.96985 -36.02403 -34.74552 -33.45613 -31.84911 -31.51379 -31.29513 -30.28466 -27.62841 -26.75423 -24.21505 -23.86089 -23.17056 -22.68846 -21.59960 -21.23613 -19.53405 -19.19698 -18.40130 -17.18045 -16.96546 -16.57707 -16.33432 -16.03595 -15.75662 -15.59440 -15.26495 -14.95762 -14.67532 -14.49567 -14.35924 -14.28464 -13.96823 -13.91761 -13.57683 -13.30527 -13.17412 -13.00541 -12.84619 -12.69838 -12.64170 -12.46273 -12.29136 -11.91089 -11.78369 -11.75142 -11.68421 -11.30639 -10.91753 -10.52661 -10.17924 -9.83627 -9.44601 -9.41561 -8.68972 -8.46721 -6.29723 0.33862 0.48883 0.88856 1.16252 1.39334 1.47747 1.54999 1.75969 2.20777 2.26006 2.81184 2.85757 3.37721 3.57815 3.72422 3.89959 4.08598 4.11994 4.24456 4.29778 4.46370 4.51089 4.53283 4.57024 4.68715 4.84003 4.86699 4.88156 4.94769 5.02392 5.13874 5.16827 5.18431 5.20356 5.29481 5.36299 5.40745 5.45577 5.49586 5.70767 5.70874 5.72898 5.82747 6.09454 6.11760 6.17641 6.21256 6.40353 6.74372 6.99029 7.06078 7.15726 7.67386 8.46195 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.002118 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.291776 B =13218.639548 C =13606.801430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.104 4.104 6 C 0.204 3.796 7 H 0.070 0.930 8 C -0.151 4.151 9 N -0.723 5.723 10 C 0.693 3.307 11 O -0.622 6.622 12 N -0.658 5.658 13 C 0.042 3.958 14 C -0.109 4.109 15 C -0.167 4.167 16 C 0.062 3.938 17 C -0.496 4.496 18 H 0.080 0.920 19 C 0.020 3.980 20 N -0.849 5.849 21 Si 0.991 3.009 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.255 1.255 25 C -0.207 4.207 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.409 0.591 38 H 0.415 0.585 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.281 0.719 42 H 0.113 0.887 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.680 -3.583 7.626 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.104 4.104 6 C 0.099 3.901 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.380 5.380 10 C 0.394 3.606 11 O -0.502 6.502 12 N -0.306 5.306 13 C -0.052 4.052 14 C -0.130 4.130 15 C -0.187 4.187 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.477 5.477 21 Si 0.812 3.188 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.179 1.179 25 C -0.227 4.227 26 C -0.130 4.130 27 C -0.131 4.131 28 C -0.140 4.140 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.031 -2.499 7.972 25.441 hybrid contribution 0.692 -0.065 -0.325 0.767 sum -23.339 -2.564 7.646 24.693 Atomic orbital electron populations 1.20845 0.89457 1.03719 1.03018 1.20317 0.97521 0.93065 0.98455 1.21259 0.93596 0.98765 1.00689 1.21168 0.94957 0.97573 0.99850 1.19802 0.93297 0.94700 1.02634 1.19533 0.89808 0.90810 0.89907 0.91212 1.22113 1.00415 1.03220 0.95219 1.45055 1.15972 1.26051 1.50952 1.16192 0.82312 0.83117 0.78980 1.90918 1.58129 1.33834 1.67345 1.41854 1.13558 1.26546 1.48686 1.17113 0.86247 0.93703 1.08149 1.20667 0.96228 0.96498 0.99564 1.21165 0.93162 0.99406 1.04986 1.18067 0.93179 0.91722 0.91037 1.19745 0.97802 1.06992 1.28189 0.90223 1.26859 1.05516 0.93492 0.93212 1.69925 1.38819 1.07889 1.31069 0.85073 0.75631 0.79562 0.78573 1.18723 1.19846 1.17862 1.20941 0.96685 0.97110 1.07950 1.20411 0.94065 0.96354 1.02122 1.21093 0.94766 0.97435 0.99790 1.21302 0.93781 0.98616 1.00316 0.90535 0.90469 0.90800 0.84404 0.85672 0.90342 0.90919 0.94336 0.75323 0.74798 0.88720 0.87845 0.90861 0.86858 0.84565 0.84647 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.24 0.71 -0.24 16 2 C -0.09 -1.28 5.88 -19.87 -0.12 -1.40 16 3 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 4 C -0.12 -2.16 9.67 22.27 0.22 -1.95 16 5 C -0.10 -2.00 4.96 -19.87 -0.10 -2.10 16 6 C 0.20 4.97 2.78 44.25 0.12 5.09 16 7 H 0.07 2.08 7.44 -2.38 -0.02 2.06 16 8 C -0.15 -3.49 9.46 71.98 0.68 -2.81 16 9 N -0.72 -18.20 5.03 -461.41 -2.32 -20.52 16 10 C 0.69 25.10 8.36 179.05 1.50 26.60 16 11 O -0.62 -29.44 13.44 -3.96 -0.05 -29.49 16 12 N -0.66 -22.57 5.31 -316.79 -1.68 -24.25 16 13 C 0.04 1.87 6.30 38.56 0.24 2.12 16 14 C -0.11 -5.78 8.61 22.13 0.19 -5.59 16 15 C -0.17 -9.65 8.62 22.48 0.19 -9.46 16 16 C 0.06 3.51 5.55 -21.28 -0.12 3.39 16 17 C -0.50 -27.74 9.02 23.39 0.21 -27.53 16 18 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 19 C 0.02 1.08 5.42 85.23 0.46 1.54 16 20 N -0.85 -48.45 10.60 21.82 0.23 -48.22 16 21 Si 0.99 40.64 29.56 68.60 2.03 42.66 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 C -0.21 -10.03 9.74 22.48 0.22 -9.82 16 26 C -0.11 -4.62 9.90 22.14 0.22 -4.40 16 27 C -0.11 -1.75 9.06 22.27 0.20 -1.54 16 28 C -0.12 -1.65 9.70 22.27 0.22 -1.43 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.49 8.09 -2.39 -0.02 0.47 16 31 H 0.07 0.51 8.09 -2.39 -0.02 0.50 16 32 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.13 2.20 8.04 -2.91 -0.02 2.17 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.41 7.27 6.87 -92.71 -0.64 6.63 16 38 H 0.41 10.13 8.83 -92.70 -0.82 9.31 16 39 H 0.09 5.20 6.25 -2.91 -0.02 5.18 16 40 H 0.10 6.42 6.13 -2.91 -0.02 6.40 16 41 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 42 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.14 1.60 6.90 -2.91 -0.02 1.58 16 45 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -73.91 375.57 3.04 -70.87 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.43 Total: 40.18 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 5.27 Total: -31.24 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -3.77 Total: -92.99 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.05 Total: -29.49 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -73.91 3.04 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079648847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.802 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds