Wall clock time and date at job start Tue Mar 31 2020 14:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38306 * 119.96543 * 2 1 4 4 C 1.38257 * 120.14100 * 179.76792 * 3 2 1 5 5 C 1.38129 * 120.07190 * 0.50717 * 4 3 2 6 6 C 1.38849 * 119.92949 * 359.75209 * 5 4 3 7 7 N 1.39950 * 120.07153 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99906 * 324.92779 * 7 6 5 9 9 O 1.21591 * 120.00193 * 4.61579 * 8 7 6 10 10 N 1.34780 * 119.99951 * 184.62120 * 8 7 6 11 11 C 1.46496 * 119.99884 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47201 * 34.99501 * 11 10 8 13 13 C 1.53001 * 109.47207 * 155.00017 * 11 10 8 14 14 C 1.50701 * 109.46847 * 294.99729 * 13 11 10 15 15 H 1.08000 * 120.00017 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00156 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99496 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00245 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47205 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47400 * 120.00187 * 18 16 14 21 21 H 1.48505 * 109.46830 * 240.00512 * 18 16 14 22 22 C 1.50702 * 109.47126 * 274.99844 * 11 10 8 23 23 C 1.38238 * 119.99632 * 319.72990 * 22 11 10 24 24 C 1.38241 * 119.99853 * 179.78905 * 23 22 11 25 25 C 1.38230 * 119.99569 * 0.43857 * 24 23 22 26 26 C 1.38238 * 120.00713 * 359.81401 * 25 24 23 27 27 C 1.38236 * 120.00164 * 140.00149 * 22 11 10 28 28 C 1.38100 * 119.96911 * 180.27809 * 2 1 3 29 29 H 1.08997 * 109.46961 * 269.72073 * 1 2 3 30 30 H 1.08994 * 109.47051 * 29.72378 * 1 2 3 31 31 H 1.09002 * 109.46711 * 149.72227 * 1 2 3 32 32 H 1.07999 * 119.92673 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.96550 * 180.23390 * 4 3 2 34 34 H 1.08004 * 120.03984 * 179.72428 * 5 4 3 35 35 H 0.97001 * 119.99720 * 144.92229 * 7 6 5 36 36 H 0.96996 * 119.99626 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46972 * 54.99550 * 13 11 10 38 38 H 1.08993 * 109.47320 * 174.99763 * 13 11 10 39 39 H 0.97000 * 120.00054 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.00350 * 359.97438 * 23 22 11 41 41 H 1.07999 * 119.99991 * 180.26989 * 24 23 22 42 42 H 1.08005 * 119.99733 * 179.83390 * 25 24 23 43 43 H 1.07997 * 120.00520 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.99938 * 359.97438 * 27 22 11 45 45 H 1.07995 * 120.02910 * 359.95390 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2024 0.0048 5 6 4.2762 0.0092 -0.0009 6 6 3.5857 -1.1954 -0.0063 7 7 4.2877 -2.4061 -0.0127 8 6 5.4517 -2.5066 -0.6846 9 8 5.9343 -1.5246 -1.2149 10 7 6.0806 -3.6956 -0.7688 11 6 7.3456 -3.8050 -1.4997 12 1 7.9216 -2.8891 -1.3680 13 6 8.1452 -4.9926 -0.9603 14 6 8.5337 -4.7278 0.4715 15 1 8.2393 -3.8049 0.9491 16 6 9.2641 -5.6641 1.1722 17 7 9.6222 -6.7880 0.5908 18 14 9.7450 -5.3362 2.9471 19 1 9.2247 -4.0092 3.3639 20 1 9.1683 -6.3907 3.8192 21 1 11.2250 -5.3475 3.0691 22 6 7.0626 -4.0140 -2.9651 23 6 6.0328 -4.8483 -3.3580 24 6 5.7704 -5.0367 -4.7021 25 6 6.5436 -4.3978 -5.6533 26 6 7.5767 -3.5675 -5.2605 27 6 7.8363 -3.3758 -3.9163 28 6 2.1968 -1.1963 -0.0058 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3633 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5182 32 1 1.6560 2.1325 0.0004 33 1 4.1169 2.1397 0.0086 34 1 5.3562 0.0132 -0.0016 35 1 3.9365 -3.1728 0.4666 36 1 5.6957 -4.4789 -0.3456 37 1 7.5349 -5.8943 -1.0103 38 1 9.0442 -5.1284 -1.5614 39 1 10.1363 -7.4466 1.0835 40 1 5.4314 -5.3507 -2.6149 41 1 4.9631 -5.6851 -5.0090 42 1 6.3403 -4.5470 -6.7035 43 1 8.1810 -3.0686 -6.0037 44 1 8.6434 -2.7271 -3.6094 45 1 1.6568 -2.1316 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163550947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:49 Heat of formation + Delta-G solvation = -4.635490 kcal Electronic energy + Delta-G solvation = -26518.784581 eV Core-core repulsion = 22885.779329 eV Total energy + Delta-G solvation = -3633.005251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74688 -40.38246 -39.50447 -36.99167 -35.82117 -34.77237 -33.38035 -32.54030 -31.71001 -30.69562 -30.15273 -27.66642 -26.73316 -23.94637 -23.74373 -23.28560 -23.14655 -21.47507 -21.29409 -19.52748 -18.70913 -18.13203 -17.58220 -17.23401 -16.59549 -16.55022 -16.41209 -16.02858 -15.78030 -15.34561 -14.96920 -14.72224 -14.53401 -14.48319 -14.19679 -14.14999 -13.95425 -13.67825 -13.43469 -13.14697 -12.94155 -12.93552 -12.64281 -12.57486 -12.46743 -12.15547 -12.03331 -11.88503 -11.61349 -11.37357 -11.33713 -11.01488 -10.60534 -10.07289 -9.75972 -9.63008 -9.53254 -8.99534 -8.21806 -6.31672 0.39773 0.47819 0.50467 0.55725 1.36616 1.39804 1.50906 1.66151 2.10425 2.38504 2.89942 2.93908 3.11317 3.29520 3.95825 3.99113 4.02854 4.03174 4.20307 4.29352 4.31528 4.40182 4.48512 4.53040 4.60790 4.64394 4.74607 4.77881 4.91508 4.91973 5.00220 5.11786 5.19203 5.24442 5.27485 5.39238 5.42237 5.50232 5.58368 5.60570 5.63599 5.66075 5.71730 5.76908 5.86184 6.05677 6.15180 6.17275 6.19981 6.81031 7.02698 7.37323 7.52899 8.89042 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.004076 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.992109 B = 6868.479919 C = 9230.800827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.157 4.157 6 C 0.155 3.845 7 N -0.678 5.678 8 C 0.701 3.299 9 O -0.615 6.615 10 N -0.705 5.705 11 C 0.219 3.781 12 H 0.058 0.942 13 C 0.039 3.961 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.924 5.924 18 Si 0.956 3.044 19 H -0.272 1.272 20 H -0.275 1.275 21 H -0.282 1.282 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.420 0.580 36 H 0.407 0.593 37 H 0.014 0.986 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.113 0.887 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.171 8.958 -5.081 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.161 4.161 4 C -0.124 4.124 5 C -0.177 4.177 6 C 0.060 3.940 7 N -0.327 5.327 8 C 0.402 3.598 9 O -0.495 6.495 10 N -0.358 5.358 11 C 0.114 3.886 12 H 0.076 0.924 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.207 1.207 22 C -0.099 4.099 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.173 4.173 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.258 0.742 36 H 0.242 0.758 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.131 0.869 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.579 9.587 -5.536 20.775 hybrid contribution 0.904 -0.849 1.476 1.928 sum -16.676 8.739 -4.059 19.259 Atomic orbital electron populations 1.20826 0.88496 1.03826 1.03385 1.20092 0.97666 0.91968 0.97524 1.21312 0.93541 0.98803 1.02449 1.21239 0.95088 0.97345 0.98749 1.21309 1.00424 0.92595 1.03409 1.17764 0.91356 0.84737 1.00123 1.42457 1.22390 1.13881 1.53944 1.16067 0.80700 0.83873 0.79153 1.90855 1.67647 1.37344 1.53685 1.44943 1.24387 1.09270 1.57179 1.19622 0.83218 0.99552 0.86239 0.92400 1.19137 0.94013 0.91821 0.94912 1.21410 1.34233 1.03213 0.97773 0.93015 1.25750 0.95800 0.94861 1.02255 1.70069 1.38982 1.08900 1.38494 0.85538 0.77940 0.78188 0.80180 1.19636 1.20002 1.20740 1.20461 0.96638 0.97253 0.95564 1.21058 0.97542 0.98220 0.97050 1.21436 1.00437 1.00126 0.92324 1.21469 0.95495 0.97066 1.00700 1.21387 0.98591 0.99129 0.95096 1.21179 0.99876 1.00061 0.94026 1.20990 0.90824 0.99887 1.05595 0.89883 0.90211 0.90785 0.83441 0.84666 0.87402 0.74229 0.75769 0.96745 0.97527 0.92686 0.86164 0.83625 0.83120 0.83870 0.86936 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 2 C -0.07 -1.40 5.88 -19.88 -0.12 -1.51 16 3 C -0.14 -2.89 9.70 22.29 0.22 -2.67 16 4 C -0.11 -2.67 10.04 22.25 0.22 -2.45 16 5 C -0.16 -5.04 8.70 22.39 0.19 -4.85 16 6 C 0.16 4.55 6.30 38.15 0.24 4.79 16 7 N -0.68 -20.07 5.34 -317.17 -1.69 -21.77 16 8 C 0.70 26.53 8.37 179.05 1.50 28.03 16 9 O -0.62 -27.86 13.44 -4.00 -0.05 -27.92 16 10 N -0.71 -26.36 4.05 -461.41 -1.87 -28.23 16 11 C 0.22 9.44 2.11 44.25 0.09 9.53 16 12 H 0.06 2.80 7.44 -2.39 -0.02 2.78 16 13 C 0.04 1.93 4.49 29.85 0.13 2.07 16 14 C -0.53 -28.67 8.84 25.60 0.23 -28.44 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.67 5.46 84.66 0.46 1.13 16 17 N -0.92 -53.68 13.29 21.45 0.28 -53.40 16 18 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 C -0.10 -3.80 4.91 -19.86 -0.10 -3.89 16 23 C -0.12 -4.07 9.32 22.27 0.21 -3.87 16 24 C -0.13 -3.51 10.05 22.27 0.22 -3.28 16 25 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 26 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 27 C -0.13 -4.84 9.67 22.27 0.22 -4.63 16 28 C -0.15 -3.43 9.62 22.39 0.22 -3.21 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.11 4.17 6.22 -2.91 -0.02 4.15 16 35 H 0.42 9.47 8.84 -92.71 -0.82 8.65 16 36 H 0.41 13.51 8.62 -92.71 -0.80 12.71 16 37 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.12 3.80 7.73 -2.91 -0.02 3.77 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.11 4.10 8.04 -2.91 -0.02 4.07 16 45 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -71.61 382.40 3.18 -68.43 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.61 Total: 37.74 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 5.10 Total: -20.44 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.28 Total: -103.39 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.61 3.18 -68.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163550947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.793 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds