Wall clock time and date at job start Tue Mar 31 2020 13:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39351 * 119.58478 * 2 1 4 4 C 1.36056 * 121.04984 * 179.97438 * 3 2 1 5 5 C 1.40710 * 119.74487 * 359.97438 * 4 3 2 6 6 N 1.33571 * 120.96617 * 180.02562 * 5 4 3 7 7 C 1.30967 * 121.82350 * 179.97438 * 6 5 4 8 8 C 1.50708 * 119.05643 * 180.02562 * 7 6 5 9 9 C 1.53004 * 117.49752 * 163.72844 * 8 7 6 10 10 C 1.52997 * 117.49787 * 95.06713 * 8 7 6 11 11 C 1.39314 * 121.88849 * 359.97438 * 7 6 5 12 12 C 1.38860 * 119.57380 * 0.02562 * 11 7 6 13 13 C 1.47905 * 121.11337 * 179.97438 * 12 11 7 14 14 O 1.21545 * 120.00224 * 174.14571 * 13 12 11 15 15 N 1.34777 * 119.99453 * 354.14322 * 13 12 11 16 16 C 1.46507 * 119.99411 * 179.72373 * 15 13 12 17 17 H 1.08997 * 109.47357 * 325.27370 * 16 15 13 18 18 C 1.52998 * 109.47029 * 85.28102 * 16 15 13 19 19 C 1.50710 * 109.46852 * 205.27945 * 16 15 13 20 20 H 1.08002 * 119.99707 * 359.97438 * 19 16 15 21 21 C 1.37872 * 119.99585 * 180.02562 * 19 16 15 22 22 N 1.31519 * 119.99619 * 179.97438 * 21 19 16 23 23 Si 1.86799 * 120.00294 * 0.02562 * 21 19 16 24 24 H 1.48494 * 109.47240 * 89.99993 * 23 21 19 25 25 H 1.48507 * 109.47044 * 209.99881 * 23 21 19 26 26 H 1.48500 * 109.46986 * 329.99767 * 23 21 19 27 27 C 1.41663 * 119.01046 * 0.25164 * 5 4 3 28 28 C 1.36256 * 119.58343 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47141 * 90.00098 * 1 2 3 30 30 H 1.09001 * 109.46742 * 209.99649 * 1 2 3 31 31 H 1.09000 * 109.47205 * 329.99611 * 1 2 3 32 32 H 1.07994 * 119.47091 * 0.02562 * 3 2 1 33 33 H 1.08006 * 120.12572 * 179.97438 * 4 3 2 34 34 H 1.08998 * 115.55011 * 309.39757 * 8 7 6 35 35 H 1.09000 * 117.49423 * 0.02562 * 9 8 7 36 36 H 1.08997 * 117.49667 * 145.01941 * 9 8 7 37 37 H 1.08996 * 117.49795 * 214.97373 * 10 8 7 38 38 H 1.09000 * 117.49955 * 359.97438 * 10 8 7 39 39 H 1.07993 * 120.21275 * 179.97438 * 11 7 6 40 40 H 0.96992 * 120.00518 * 0.02562 * 15 13 12 41 41 H 1.08997 * 109.46862 * 299.99533 * 18 16 15 42 42 H 1.08991 * 109.47228 * 59.99583 * 18 16 15 43 43 H 1.09005 * 109.46782 * 180.02562 * 18 16 15 44 44 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.17722 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2118 0.0000 4 6 3.5551 1.2466 0.0005 5 6 4.2842 0.0432 0.0016 6 7 5.6199 0.0488 0.0027 7 6 6.3152 -1.0610 0.0042 8 6 7.8202 -0.9818 0.0059 9 6 8.5937 -2.2455 0.3879 10 6 8.5304 -1.0636 1.3586 11 6 5.7036 -2.3127 0.0053 12 6 4.3176 -2.3982 0.0043 13 6 3.6327 -3.7091 0.0049 14 8 2.4231 -3.7628 0.1114 15 7 4.3500 -4.8441 -0.1126 16 6 3.6722 -6.1429 -0.1059 17 1 2.8144 -6.1016 0.5653 18 6 3.1969 -6.4774 -1.5212 19 6 4.6293 -7.2066 0.3671 20 1 5.6414 -6.9416 0.6354 21 6 4.2132 -8.5180 0.4562 22 7 5.0486 -9.4463 0.8685 23 14 2.4634 -8.9764 -0.0099 24 1 2.4091 -9.3176 -1.4542 25 1 2.0283 -10.1481 0.7922 26 1 1.5618 -7.8282 0.2617 27 6 3.5806 -1.1864 -0.0033 28 6 2.1797 -1.1849 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6397 2.1381 0.0004 33 1 4.0731 2.1943 0.0001 34 1 8.2578 -0.3344 -0.7539 35 1 8.0139 -3.1342 0.6375 36 1 9.5402 -2.4291 -0.1204 37 1 9.4354 -0.4702 1.4885 38 1 7.9091 -1.1742 2.2473 39 1 6.3034 -3.2107 0.0062 40 1 5.3153 -4.8012 -0.1972 41 1 2.5046 -5.7080 -1.8633 42 1 4.0547 -6.5186 -2.1923 43 1 2.6921 -7.4435 -1.5161 44 1 4.7560 -10.3690 0.9309 45 1 1.6358 -2.1180 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176684437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:34 Heat of formation + Delta-G solvation = 28.692697 kcal Electronic energy + Delta-G solvation = -26889.239266 eV Core-core repulsion = 23257.679233 eV Total energy + Delta-G solvation = -3631.560033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32295 -40.50785 -39.32230 -37.23107 -37.01800 -34.81697 -34.32352 -32.85237 -32.10804 -30.84203 -28.35013 -27.26801 -26.03612 -24.67273 -24.35811 -23.16792 -22.75357 -21.91448 -21.32709 -19.37448 -18.83139 -18.20122 -18.09875 -17.22142 -16.91896 -16.39485 -16.33504 -16.04118 -15.70492 -15.42067 -15.30813 -14.97502 -14.90827 -14.48410 -14.26998 -14.22328 -14.08652 -13.64974 -13.45312 -13.27507 -12.91875 -12.81015 -12.57028 -12.49119 -12.33301 -12.20700 -12.15108 -11.65757 -11.61393 -11.36715 -11.35814 -11.32820 -11.23658 -10.89651 -10.33853 -10.08652 -9.68287 -9.16638 -8.39754 -6.46495 -1.01452 -0.32112 0.64539 1.26912 1.35316 1.44007 1.61161 2.03638 2.08639 2.24776 2.72561 2.94105 2.96606 3.12431 3.41382 3.52823 3.63274 3.72896 3.93620 4.01306 4.02194 4.09654 4.20100 4.30601 4.38194 4.44730 4.46323 4.50289 4.62394 4.65929 4.76921 4.80725 4.81771 4.92692 4.96638 5.03614 5.08032 5.15029 5.21286 5.25726 5.26252 5.28100 5.35502 5.45470 5.51068 5.62038 5.87635 6.07731 6.52085 6.65376 6.75006 7.08587 7.24618 8.75157 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.004225 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.471529 B = 6625.077684 C = 8989.182002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.098 4.098 5 C 0.105 3.895 6 N -0.462 5.462 7 C 0.176 3.824 8 C -0.120 4.120 9 C -0.167 4.167 10 C -0.155 4.155 11 C -0.126 4.126 12 C -0.084 4.084 13 C 0.550 3.450 14 O -0.566 6.566 15 N -0.685 5.685 16 C 0.242 3.758 17 H 0.029 0.971 18 C -0.156 4.156 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.033 3.967 22 N -0.930 5.930 23 Si 0.936 3.064 24 H -0.259 1.259 25 H -0.292 1.292 26 H -0.261 1.261 27 C -0.083 4.083 28 C -0.134 4.134 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.159 0.841 40 H 0.407 0.593 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.271 0.729 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 22.307 -3.189 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.017 4.017 6 N -0.170 5.170 7 C 0.024 3.976 8 C -0.139 4.139 9 C -0.205 4.205 10 C -0.193 4.193 11 C -0.147 4.147 12 C -0.095 4.095 13 C 0.337 3.663 14 O -0.448 6.448 15 N -0.334 5.334 16 C 0.138 3.862 17 H 0.047 0.953 18 C -0.214 4.214 19 C -0.574 4.574 20 H 0.078 0.922 21 C -0.167 4.167 22 N -0.569 5.569 23 Si 0.763 3.237 24 H -0.184 1.184 25 H -0.219 1.219 26 H -0.186 1.186 27 C -0.086 4.086 28 C -0.152 4.152 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.187 0.813 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.102 0.898 39 H 0.177 0.823 40 H 0.243 0.757 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.042 22.888 -3.083 23.095 hybrid contribution -0.578 -1.834 -0.045 1.923 sum -0.535 21.054 -3.128 21.292 Atomic orbital electron populations 1.20901 0.88804 1.03856 1.03473 1.20226 0.98211 0.92468 0.97289 1.21249 0.93676 0.98664 0.97091 1.21057 0.94119 0.96411 1.00092 1.19172 0.89258 0.93164 1.00078 1.67539 1.06719 1.31073 1.11692 1.20826 0.96039 0.87143 0.93615 1.20882 0.86120 1.04671 1.02212 1.23276 1.02509 0.91818 1.02853 1.23062 1.02369 1.01909 0.91937 1.22495 0.93200 1.00694 0.98314 1.20388 0.94465 0.92787 1.01892 1.18392 0.86807 0.84290 0.76805 1.90531 1.14864 1.87087 1.52290 1.45971 1.11181 1.05399 1.70856 1.18887 0.93140 0.80325 0.93874 0.95332 1.22355 1.00807 0.99599 0.98667 1.21189 0.98823 0.91895 1.45460 0.92223 1.25503 1.00858 0.96135 0.94206 1.69964 1.37211 1.02167 1.47516 0.86047 0.81078 0.77839 0.78701 1.18441 1.21936 1.18620 1.18851 0.95468 0.92539 1.01714 1.21874 0.92880 1.00925 0.99534 0.89826 0.92120 0.88752 0.81282 0.82381 0.84509 0.88710 0.85630 0.85871 0.89809 0.82350 0.75675 0.93497 0.91510 0.93682 0.91960 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.99 71.24 0.71 -1.30 16 2 C -0.08 -1.96 5.85 -20.06 -0.12 -2.07 16 3 C -0.09 -1.68 9.58 22.03 0.21 -1.47 16 4 C -0.10 -2.21 9.98 22.37 0.22 -1.99 16 5 C 0.11 3.09 6.61 40.33 0.27 3.35 16 6 N -0.46 -13.17 10.19 -176.84 -1.80 -14.98 16 7 C 0.18 4.65 6.46 42.95 0.28 4.92 16 8 C -0.12 -2.33 6.19 -11.54 -0.07 -2.40 16 9 C -0.17 -2.77 9.78 30.62 0.30 -2.47 16 10 C -0.16 -2.60 10.24 30.62 0.31 -2.29 16 11 C -0.13 -3.60 8.83 22.68 0.20 -3.40 16 12 C -0.08 -2.88 5.94 -19.68 -0.12 -3.00 16 13 C 0.55 21.85 7.72 86.80 0.67 22.52 16 14 O -0.57 -25.37 13.19 -3.86 -0.05 -25.42 16 15 N -0.69 -27.38 5.03 -448.90 -2.26 -29.63 16 16 C 0.24 11.35 2.15 44.25 0.10 11.45 16 17 H 0.03 1.49 6.63 -2.39 -0.02 1.47 16 18 C -0.16 -6.70 8.97 71.98 0.65 -6.06 16 19 C -0.54 -28.61 9.31 25.60 0.24 -28.37 16 20 H 0.06 3.37 7.98 -2.91 -0.02 3.34 16 21 C 0.03 1.84 5.45 84.65 0.46 2.30 16 22 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 23 Si 0.94 43.80 24.37 68.60 1.67 45.47 16 24 H -0.26 -11.36 6.87 99.48 0.68 -10.67 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.26 -12.14 6.53 99.48 0.65 -11.49 16 27 C -0.08 -2.76 5.76 -21.09 -0.12 -2.88 16 28 C -0.13 -4.28 8.86 22.26 0.20 -4.09 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.06 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 1.74 6.34 -2.39 -0.02 1.73 16 36 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.16 3.89 4.68 -2.91 -0.01 3.88 16 40 H 0.41 14.18 6.71 -92.71 -0.62 13.56 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.04 1.96 3.27 -2.38 -0.01 1.95 16 44 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.15 5.38 4.98 -2.91 -0.01 5.37 16 Total: -1.00 -68.70 363.07 2.58 -66.12 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.34 Total: 30.08 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 4.38 Total: -17.23 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -3.76 Total: -99.01 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Total: -68.70 2.58 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176684437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.809 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds