Wall clock time and date at job start Tue Mar 31 2020 13:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39345 * 119.58211 * 2 1 4 4 C 1.36068 * 121.05182 * 180.02562 * 3 2 1 5 5 C 1.40709 * 119.74302 * 0.04223 * 4 3 2 6 6 N 1.33562 * 120.97436 * 179.97438 * 5 4 3 7 7 C 1.30974 * 121.82488 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.05231 * 179.97438 * 7 6 5 9 9 C 1.53002 * 117.49514 * 163.74620 * 8 7 6 10 10 C 1.52999 * 117.49791 * 95.08819 * 8 7 6 11 11 C 1.39306 * 121.88434 * 359.97438 * 7 6 5 12 12 C 1.38857 * 119.57939 * 0.02562 * 11 7 6 13 13 C 1.47905 * 121.11092 * 180.02562 * 12 11 7 14 14 O 1.21544 * 119.99603 * 174.15354 * 13 12 11 15 15 N 1.34775 * 120.00397 * 354.14244 * 13 12 11 16 16 C 1.46499 * 120.00149 * 180.02562 * 15 13 12 17 17 H 1.08990 * 109.47088 * 35.00273 * 16 15 13 18 18 C 1.53003 * 109.46895 * 275.00368 * 16 15 13 19 19 C 1.50698 * 109.46853 * 155.00339 * 16 15 13 20 20 H 1.08001 * 120.00531 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99588 * 179.97438 * 19 16 15 22 22 N 1.31509 * 120.00485 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99824 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46823 * 60.00274 * 23 21 19 25 25 H 1.48501 * 109.47025 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47015 * 300.00297 * 23 21 19 27 27 C 1.41667 * 119.00227 * 359.95704 * 5 4 3 28 28 C 1.36242 * 119.58506 * 180.02562 * 2 1 3 29 29 H 1.09009 * 109.47332 * 269.97697 * 1 2 3 30 30 H 1.08996 * 109.47453 * 29.97535 * 1 2 3 31 31 H 1.09003 * 109.47236 * 149.98205 * 1 2 3 32 32 H 1.08007 * 119.47443 * 0.02636 * 3 2 1 33 33 H 1.08002 * 120.12792 * 180.02562 * 4 3 2 34 34 H 1.08995 * 115.54973 * 309.40902 * 8 7 6 35 35 H 1.09008 * 117.49867 * 359.97438 * 9 8 7 36 36 H 1.08997 * 117.49840 * 145.02072 * 9 8 7 37 37 H 1.09001 * 117.49544 * 214.97269 * 10 8 7 38 38 H 1.09004 * 117.50013 * 359.96865 * 10 8 7 39 39 H 1.08001 * 120.20807 * 179.97438 * 11 7 6 40 40 H 0.97000 * 119.99504 * 0.02562 * 15 13 12 41 41 H 1.09002 * 109.46877 * 299.99644 * 18 16 15 42 42 H 1.08990 * 109.47216 * 60.00071 * 18 16 15 43 43 H 1.09004 * 109.47015 * 180.02562 * 18 16 15 44 44 H 0.96998 * 120.00446 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.18112 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2118 0.0000 4 6 3.5551 1.2467 -0.0005 5 6 4.2843 0.0433 -0.0020 6 7 5.6199 0.0489 -0.0030 7 6 6.3152 -1.0611 -0.0039 8 6 7.8202 -0.9819 -0.0056 9 6 8.5944 -2.2460 0.3733 10 6 8.5335 -1.0651 1.3453 11 6 5.7034 -2.3126 -0.0032 12 6 4.3174 -2.3980 -0.0021 13 6 3.6326 -3.7090 -0.0008 14 8 2.4231 -3.7626 0.1073 15 7 4.3495 -4.8440 -0.1198 16 6 3.6710 -6.1424 -0.1191 17 1 2.7072 -6.0489 -0.6192 18 6 3.4544 -6.6038 1.3236 19 6 4.5192 -7.1527 -0.8477 20 1 5.4689 -6.8574 -1.2688 21 6 4.0833 -8.4545 -0.9758 22 7 2.9271 -8.8144 -0.4626 23 14 5.1343 -9.7068 -1.8796 24 1 6.4481 -9.8337 -1.1990 25 1 4.4472 -11.0232 -1.8777 26 1 5.3434 -9.2589 -3.2799 27 6 3.5806 -1.1862 -0.0019 28 6 2.1797 -1.1848 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6396 2.1382 0.0004 33 1 4.0731 2.1944 -0.0001 34 1 8.2559 -0.3338 -0.7659 35 1 8.0153 -3.1347 0.6242 36 1 9.5398 -2.4292 -0.1374 37 1 9.4389 -0.4718 1.4737 38 1 7.9143 -1.1765 2.2355 39 1 6.3032 -3.2107 -0.0044 40 1 5.3147 -4.8011 -0.2059 41 1 4.4184 -6.6973 1.8237 42 1 2.8410 -5.8731 1.8505 43 1 2.9500 -7.5701 1.3241 44 1 2.6206 -9.7303 -0.5524 45 1 1.6358 -2.1179 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176684456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:39 Heat of formation + Delta-G solvation = 38.459223 kcal Electronic energy + Delta-G solvation = -26813.119368 eV Core-core repulsion = 23181.982843 eV Total energy + Delta-G solvation = -3631.136524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11100 -38.83611 -38.35593 -36.31021 -35.02905 -33.41699 -32.47665 -31.83049 -30.29287 -28.85021 -27.26503 -25.34608 -24.73972 -23.70031 -22.97829 -22.42317 -21.36812 -20.53827 -19.69740 -17.78505 -17.74042 -16.87136 -16.24269 -15.66558 -15.29433 -15.27586 -14.82460 -14.64913 -14.56281 -14.12168 -13.94132 -13.78648 -13.33327 -13.13300 -12.87988 -12.54981 -12.47645 -12.05390 -11.81511 -11.71505 -11.55894 -11.41670 -11.19749 -11.13806 -11.03601 -10.85714 -10.63016 -10.48537 -10.41602 -10.30419 -10.28080 -9.90774 -9.15200 -8.91060 -8.64192 -8.60103 -8.18968 -7.96189 -6.19006 -4.29077 0.20251 0.79203 1.85124 2.75959 3.21884 3.27494 3.28183 3.50952 3.56817 3.76035 3.95801 4.21834 4.29717 4.53873 4.65729 4.71039 4.80297 4.85861 4.93644 4.97823 5.05527 5.13718 5.20526 5.33449 5.46463 5.47689 5.53589 5.62055 5.66390 5.74179 5.82138 5.92705 5.95029 5.98061 6.14095 6.18020 6.31388 6.60654 6.64872 6.74158 6.85804 6.94845 7.04151 7.31658 7.43160 7.59843 7.80845 7.89666 8.05459 8.46577 8.65840 8.90481 9.38281 10.86908 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.003957 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.170803 B = 7074.164949 C = 9243.314172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.094 4.094 4 C -0.101 4.101 5 C 0.126 3.874 6 N -0.461 5.461 7 C 0.183 3.817 8 C -0.109 4.109 9 C -0.173 4.173 10 C -0.161 4.161 11 C -0.141 4.141 12 C -0.055 4.055 13 C 0.544 3.456 14 O -0.538 6.538 15 N -0.692 5.692 16 C 0.264 3.736 17 H 0.053 0.947 18 C -0.148 4.148 19 C -0.537 4.537 20 H 0.062 0.938 21 C 0.069 3.931 22 N -0.882 5.882 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.276 1.276 27 C -0.068 4.068 28 C -0.094 4.094 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.144 0.856 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.016 0.984 43 H 0.093 0.907 44 H 0.266 0.734 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 17.356 2.053 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.114 4.114 4 C -0.120 4.120 5 C 0.004 3.996 6 N -0.170 5.170 7 C 0.031 3.969 8 C -0.128 4.128 9 C -0.210 4.210 10 C -0.199 4.199 11 C -0.162 4.162 12 C -0.066 4.066 13 C 0.329 3.671 14 O -0.418 6.418 15 N -0.339 5.339 16 C 0.163 3.837 17 H 0.070 0.930 18 C -0.206 4.206 19 C -0.576 4.576 20 H 0.080 0.920 21 C -0.135 4.135 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.071 4.071 28 C -0.112 4.112 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.161 0.839 40 H 0.223 0.777 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.554 17.936 2.141 18.629 hybrid contribution 0.731 -1.425 -0.519 1.683 sum 5.285 16.511 1.622 17.412 Atomic orbital electron populations 1.20810 0.90812 1.02915 1.02454 1.19831 0.96689 0.92861 1.00207 1.20837 0.93921 0.97805 0.98870 1.20674 0.93475 0.96455 1.01398 1.18791 0.88888 0.92689 0.99263 1.67446 1.06794 1.30673 1.12064 1.20357 0.94408 0.87856 0.94310 1.20794 0.88155 1.03019 1.00833 1.23171 1.02082 0.92576 1.03180 1.22977 1.02087 1.01707 0.93083 1.22246 0.94086 0.99393 1.00467 1.20723 0.93503 0.94371 0.98045 1.18012 0.87150 0.83523 0.78382 1.90537 1.13561 1.86453 1.51274 1.46544 1.10409 1.07199 1.69786 1.18858 0.94123 0.76666 0.94082 0.92969 1.22089 0.99091 1.02534 0.96901 1.21140 1.05615 0.94250 1.36577 0.92033 1.24870 0.95150 0.98197 0.95296 1.69878 1.19262 1.18778 1.44013 0.86492 0.80187 0.80177 0.80174 1.20086 1.21066 1.20110 1.18694 0.95028 0.92169 1.01180 1.22054 0.92885 1.00631 0.95635 0.91079 0.91671 0.91026 0.85526 0.84848 0.85870 0.87907 0.87751 0.88112 0.88630 0.83873 0.77701 0.95345 0.96526 0.88898 0.92403 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.99 36.01 0.36 -0.83 16 2 C -0.10 -1.28 5.85 -104.93 -0.61 -1.89 16 3 C -0.09 -1.11 9.58 -39.95 -0.38 -1.49 16 4 C -0.10 -1.31 9.98 -39.43 -0.39 -1.71 16 5 C 0.13 1.96 6.61 -84.87 -0.56 1.40 16 6 N -0.46 -7.01 10.19 -7.25 -0.07 -7.08 16 7 C 0.18 2.54 6.46 -82.56 -0.53 2.01 16 8 C -0.11 -1.16 6.19 -91.77 -0.57 -1.73 16 9 C -0.17 -1.55 9.78 -26.69 -0.26 -1.81 16 10 C -0.16 -1.47 10.24 -26.69 -0.27 -1.74 16 11 C -0.14 -2.06 8.83 -38.96 -0.34 -2.40 16 12 C -0.06 -0.96 5.94 -104.34 -0.62 -1.58 16 13 C 0.54 11.04 7.72 -12.30 -0.09 10.94 16 14 O -0.54 -12.31 13.19 5.33 0.07 -12.23 16 15 N -0.69 -14.18 5.03 -55.86 -0.28 -14.46 16 16 C 0.26 6.52 2.56 -69.08 -0.18 6.34 16 17 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 18 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 19 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 22 N -0.88 -24.22 11.32 55.43 0.63 -23.59 16 23 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 C -0.07 -1.16 5.76 -106.52 -0.61 -1.77 16 28 C -0.09 -1.55 8.86 -39.60 -0.35 -1.90 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 0.95 6.34 -51.92 -0.33 0.62 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.14 1.79 4.68 -52.49 -0.25 1.54 16 40 H 0.39 6.86 6.71 -40.82 -0.27 6.59 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 45 H 0.17 3.17 4.98 -52.49 -0.26 2.91 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -30.06 369.89 -10.59 -40.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.00 Total: 9.84 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -5.48 Total: -13.81 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.27 Total: -45.13 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.07 Total: -12.23 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.06 -10.59 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176684456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.100 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds