Wall clock time and date at job start Tue Mar 31 2020 14:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.00379 * 2 1 4 4 C 1.38203 * 120.00136 * 180.22690 * 3 2 1 5 5 C 1.38266 * 120.00208 * 359.81672 * 4 3 2 6 6 C 1.38209 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99876 * 179.78858 * 2 1 3 8 8 C 1.50702 * 119.99992 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.47000 * 84.72819 * 8 7 2 10 10 N 1.46501 * 109.47040 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99967 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00310 * 179.97438 * 11 10 9 14 14 C 1.39237 * 120.00232 * 175.71313 * 13 11 10 15 15 C 1.39479 * 119.83102 * 215.01913 * 14 13 11 16 16 C 1.36372 * 120.17077 * 179.75558 * 15 14 13 17 17 C 1.40871 * 119.82455 * 0.53842 * 16 15 14 18 18 C 1.41159 * 120.16414 * 179.69382 * 17 16 15 19 19 H 1.08001 * 120.00074 * 214.80851 * 18 17 16 20 20 C 1.39894 * 119.99858 * 34.80222 * 18 17 16 21 21 N 1.30882 * 120.00060 * 355.56178 * 20 18 17 22 22 Si 1.86807 * 120.00045 * 175.55626 * 20 18 17 23 23 H 1.48500 * 109.46701 * 60.00407 * 22 20 18 24 24 H 1.48498 * 109.46965 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46950 * 300.00373 * 22 20 18 26 26 C 1.40866 * 119.67399 * 359.71561 * 17 16 15 27 27 C 1.36374 * 119.82607 * 0.02562 * 26 17 16 28 28 H 1.09003 * 109.47602 * 270.20693 * 1 2 3 29 29 H 1.09002 * 109.47527 * 30.21408 * 1 2 3 30 30 H 1.09004 * 109.47133 * 150.20810 * 1 2 3 31 31 H 1.08001 * 119.99525 * 0.06174 * 3 2 1 32 32 H 1.08004 * 119.99910 * 179.83490 * 4 3 2 33 33 H 1.07999 * 119.99644 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.99759 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.47000 * 204.72570 * 8 7 2 36 36 H 1.08993 * 109.47125 * 324.72874 * 8 7 2 37 37 H 1.09008 * 109.46896 * 300.00017 * 9 8 7 38 38 H 1.09005 * 109.47203 * 59.99611 * 9 8 7 39 39 H 0.97001 * 119.99695 * 359.97438 * 10 9 8 40 40 H 0.97004 * 119.99244 * 355.70475 * 13 11 10 41 41 H 1.08008 * 119.91649 * 0.02562 * 15 14 13 42 42 H 1.07999 * 120.08919 * 180.25241 * 16 15 14 43 43 H 0.97002 * 119.99609 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.08627 * 179.97438 * 26 17 16 45 45 H 1.08001 * 119.91204 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 -0.0047 5 6 4.2717 -0.0002 -0.0057 6 6 3.5806 -1.1971 -0.0013 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5021 0.0098 9 6 1.0741 -2.8831 -1.4250 10 7 0.3411 -4.1515 -1.4197 11 6 -0.0897 -4.6857 -2.5796 12 8 0.1296 -4.1147 -3.6304 13 7 -0.7637 -5.8528 -2.5749 14 6 -1.2862 -6.3599 -3.7617 15 6 -2.4969 -7.0523 -3.7468 16 6 -3.0175 -7.5476 -4.9059 17 6 -2.3235 -7.3682 -6.1186 18 6 -2.8526 -7.8834 -7.3216 19 1 -2.1890 -8.2630 -8.0845 20 6 -4.2364 -7.9025 -7.5255 21 7 -5.0443 -7.5239 -6.5679 22 14 -4.9313 -8.4683 -9.1646 23 1 -4.5113 -9.8690 -9.4232 24 1 -6.4140 -8.3948 -9.1255 25 1 -4.4210 -7.5903 -10.2481 26 6 -1.0987 -6.6724 -6.1248 27 6 -0.5933 -6.1783 -4.9585 28 1 -0.3634 0.0037 1.0277 29 1 -0.3634 0.8880 -0.5171 30 1 -0.3634 -0.8919 -0.5106 31 1 1.6583 2.1326 0.0010 32 1 4.1204 2.1326 -0.0074 33 1 5.3516 -0.0001 -0.0098 34 1 4.1206 -2.1324 -0.0016 35 1 2.0713 -3.2818 0.4425 36 1 0.5365 -2.3949 0.6031 37 1 0.4472 -2.1033 -1.8577 38 1 1.9822 -2.9902 -2.0184 39 1 0.1658 -4.6068 -0.5813 40 1 -0.8846 -6.3396 -1.7446 41 1 -3.0257 -7.1928 -2.8156 42 1 -3.9571 -8.0800 -4.8935 43 1 -6.0039 -7.5368 -6.7095 44 1 -0.5608 -6.5313 -7.0507 45 1 0.3454 -5.6443 -4.9617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192839182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:41 Heat of formation + Delta-G solvation = 7.455995 kcal Electronic energy + Delta-G solvation = -25344.712329 eV Core-core repulsion = 21712.231403 eV Total energy + Delta-G solvation = -3632.480925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.10611 -39.64619 -37.46509 -35.55572 -34.29617 -33.32739 -32.81842 -32.23485 -29.56364 -29.16984 -28.27612 -27.06130 -24.96200 -23.54529 -22.19044 -21.54221 -20.93749 -20.77573 -19.96819 -17.93297 -17.20887 -16.67090 -16.54984 -16.22786 -15.40949 -15.14952 -15.07894 -14.73349 -14.21485 -13.98990 -13.77970 -13.67037 -13.42726 -13.14558 -12.92840 -12.62469 -12.55144 -12.43579 -12.07583 -11.87936 -11.75097 -11.62660 -11.30383 -11.19057 -11.13314 -11.07651 -10.95161 -10.67966 -10.06286 -9.49578 -9.41834 -9.19501 -9.06257 -8.91161 -8.82325 -8.80262 -7.48487 -6.77898 -6.56087 -4.28276 1.06622 1.13265 2.71736 3.03759 3.11887 3.13764 3.15797 3.22168 3.49790 3.74521 4.02362 4.45857 4.50892 4.67569 4.73366 4.76004 4.77617 4.89617 4.90548 5.06245 5.28022 5.29790 5.38135 5.43405 5.58734 5.69786 5.71325 5.80298 5.86891 6.01333 6.22651 6.24181 6.25442 6.39978 6.48624 6.60399 6.75880 6.82143 6.87667 7.10175 7.20801 7.32521 7.46123 7.70840 7.92006 8.02525 8.15014 8.36693 8.51932 8.69379 8.98285 8.98784 9.14641 10.35181 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.001917 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.983385 B =14605.544031 C =14682.259888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.081 4.081 8 C -0.093 4.093 9 C 0.146 3.854 10 N -0.754 5.754 11 C 0.694 3.306 12 O -0.577 6.577 13 N -0.668 5.668 14 C 0.024 3.976 15 C -0.124 4.124 16 C -0.140 4.140 17 C 0.097 3.903 18 C -0.462 4.462 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.814 5.814 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.204 4.204 27 C -0.087 4.087 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.392 0.608 40 H 0.391 0.609 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.338 11.649 17.128 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.081 4.081 8 C -0.130 4.130 9 C 0.021 3.979 10 N -0.411 5.411 11 C 0.395 3.605 12 O -0.454 6.454 13 N -0.314 5.314 14 C -0.068 4.068 15 C -0.144 4.144 16 C -0.160 4.160 17 C 0.095 3.905 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.442 5.442 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.224 4.224 27 C -0.107 4.107 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.225 0.775 40 H 0.224 0.776 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.277 12.230 16.188 23.212 hybrid contribution -0.497 -0.448 0.131 0.682 sum 10.780 11.782 16.319 22.833 Atomic orbital electron populations 1.20925 0.91113 1.03529 1.02397 1.19823 0.96146 0.92601 0.99153 1.21038 0.94298 0.97476 1.01033 1.21138 0.94330 0.98074 1.00214 1.21120 0.99860 0.92522 1.00881 1.21069 0.93503 0.98306 0.99881 1.19529 0.93578 0.93984 1.01038 1.20792 1.00555 0.94631 0.97044 1.21080 0.96404 0.84925 0.95455 1.45115 1.62578 1.25598 1.07851 1.16021 0.79507 0.81105 0.83900 1.90916 1.61705 1.62945 1.29809 1.42115 1.57573 1.21262 1.10409 1.17074 0.96248 1.08760 0.84767 1.20291 0.93607 1.02533 0.98008 1.21170 1.01473 1.02893 0.90504 1.17714 0.90653 0.89161 0.93009 1.19441 0.91571 1.36528 1.01769 0.90728 1.25864 0.97180 0.93134 0.98361 1.69762 1.04646 1.37323 1.32449 0.86261 0.77741 0.79893 0.82083 1.19110 1.20501 1.19149 1.20810 1.00408 1.04994 0.96178 1.20428 0.98885 0.99535 0.91873 0.91092 0.91379 0.90762 0.86096 0.86195 0.86130 0.85956 0.90321 0.90098 0.91492 0.91637 0.77496 0.77574 0.89179 0.85054 0.91195 0.88656 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.22 36.00 0.33 -0.65 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -1.03 9.70 -39.59 -0.38 -1.41 16 4 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 5 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 6 C -0.11 -0.95 9.68 -39.58 -0.38 -1.34 16 7 C -0.08 -0.74 5.13 -104.62 -0.54 -1.27 16 8 C -0.09 -0.75 4.76 -27.88 -0.13 -0.88 16 9 C 0.15 1.68 5.46 -4.04 -0.02 1.65 16 10 N -0.75 -9.38 5.56 -65.22 -0.36 -9.75 16 11 C 0.69 12.52 8.40 -86.92 -0.73 11.79 16 12 O -0.58 -13.13 13.76 5.29 0.07 -13.06 16 13 N -0.67 -11.90 5.31 -14.10 -0.07 -11.98 16 14 C 0.02 0.55 6.30 -83.57 -0.53 0.02 16 15 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 16 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 17 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 18 C -0.46 -12.54 9.02 -37.85 -0.34 -12.88 16 19 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 20 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 21 N -0.81 -21.51 10.60 55.55 0.59 -20.92 16 22 Si 0.92 19.33 29.56 -169.99 -5.03 14.31 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 27 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.64 5.40 -51.93 -0.28 0.36 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.08 0.58 7.01 -51.93 -0.36 0.22 16 37 H 0.07 0.87 6.88 -51.92 -0.36 0.52 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.39 3.49 8.49 -40.82 -0.35 3.14 16 40 H 0.39 5.35 8.83 -40.82 -0.36 4.99 16 41 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 42 H 0.13 3.53 6.13 -52.49 -0.32 3.20 16 43 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 44 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.11 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -32.44 373.48 -11.58 -44.02 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.12 Total: 12.50 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -6.28 Total: -20.76 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.15 Total: -42.64 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.07 Total: -13.06 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.44 -11.58 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192839182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.477 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds