Wall clock time and date at job start Tue Mar 31 2020 14:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31519 * 119.65297 * 2 1 4 4 C 1.32777 * 121.76892 * 180.02562 * 3 2 1 5 5 C 1.48220 * 119.57054 * 179.97438 * 4 3 2 6 6 C 1.39431 * 120.12977 * 179.72392 * 5 4 3 7 7 C 1.37992 * 119.86606 * 179.74401 * 6 5 4 8 8 C 1.38340 * 120.13306 * 0.50586 * 7 6 5 9 9 C 1.38339 * 120.25898 * 359.77045 * 8 7 6 10 10 C 1.37998 * 120.13269 * 359.97308 * 9 8 7 11 11 C 1.39509 * 120.85752 * 359.97438 * 4 3 2 12 12 C 1.38044 * 119.21354 * 359.97438 * 11 4 3 13 13 C 1.39630 * 119.65848 * 180.02562 * 2 1 3 14 14 C 1.47710 * 120.45327 * 359.95770 * 13 2 1 15 15 O 1.21566 * 120.00164 * 306.17351 * 14 13 2 16 16 N 1.34779 * 119.99845 * 126.17594 * 14 13 2 17 17 C 1.46495 * 120.00031 * 4.34853 * 16 14 13 18 18 C 1.46497 * 120.00172 * 184.34018 * 16 14 13 19 19 H 1.09006 * 109.47303 * 0.02562 * 18 16 14 20 20 C 1.52999 * 109.46966 * 119.99788 * 18 16 14 21 21 C 1.50699 * 109.47755 * 240.00352 * 18 16 14 22 22 H 1.07998 * 119.99701 * 359.97438 * 21 18 16 23 23 C 1.37869 * 120.00335 * 180.02562 * 21 18 16 24 24 N 1.31520 * 119.99906 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 120.00201 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.46892 * 59.99533 * 25 23 21 27 27 H 1.48500 * 109.47318 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46815 * 299.99703 * 25 23 21 29 29 H 1.09002 * 109.46944 * 85.34341 * 1 2 3 30 30 H 1.09009 * 109.47336 * 205.33892 * 1 2 3 31 31 H 1.09000 * 109.47608 * 325.33957 * 1 2 3 32 32 H 1.08001 * 120.06482 * 359.97438 * 6 5 4 33 33 H 1.07995 * 119.93208 * 180.27851 * 7 6 5 34 34 H 1.07993 * 119.86967 * 179.74351 * 8 7 6 35 35 H 1.08001 * 119.93391 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.06764 * 180.02562 * 10 9 8 37 37 H 1.07995 * 120.39295 * 180.02562 * 11 4 3 38 38 H 1.08003 * 120.80671 * 179.97438 * 12 11 4 39 39 H 1.08996 * 109.47914 * 84.63347 * 17 16 14 40 40 H 1.09004 * 109.47407 * 204.63946 * 17 16 14 41 41 H 1.09004 * 109.46922 * 324.63375 * 17 16 14 42 42 H 1.09002 * 109.46682 * 60.00746 * 20 18 16 43 43 H 1.09002 * 109.47448 * 180.02562 * 20 18 16 44 44 H 1.08997 * 109.47703 * 300.00294 * 20 18 16 45 45 H 0.96999 * 119.99803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1576 1.1430 0.0000 4 6 3.4845 1.1920 -0.0005 5 6 4.1678 2.5072 -0.0011 6 6 5.5606 2.5723 0.0042 7 6 6.1912 3.7997 -0.0017 8 6 5.4443 4.9642 -0.0022 9 6 4.0622 4.9059 -0.0017 10 6 3.4203 3.6843 -0.0011 11 6 4.2437 0.0216 -0.0005 12 6 3.5996 -1.1994 0.0005 13 6 2.1978 -1.2134 -0.0005 14 6 1.4618 -2.4940 -0.0002 15 8 0.6207 -2.7115 0.8502 16 7 1.7227 -3.4215 -0.9426 17 6 2.8012 -3.2004 -1.9091 18 6 0.9280 -4.6508 -1.0004 19 1 0.1790 -4.6369 -0.2086 20 6 0.2312 -4.7442 -2.3593 21 6 1.8319 -5.8426 -0.8164 22 1 2.8923 -5.6987 -0.6713 23 6 1.3052 -7.1166 -0.8342 24 7 0.0138 -7.2918 -1.0114 25 14 2.4257 -8.5938 -0.6068 26 1 3.1021 -8.5036 0.7122 27 1 1.6201 -9.8399 -0.6652 28 1 3.4457 -8.6122 -1.6860 29 1 -0.3633 0.0834 -1.0243 30 1 -0.3634 -0.9289 0.4398 31 1 -0.3634 0.8453 0.5844 32 1 6.1447 1.6639 0.0091 33 1 7.2699 3.8514 -0.0021 34 1 5.9423 5.9225 -0.0026 35 1 3.4843 5.8183 -0.0017 36 1 2.3413 3.6400 -0.0011 37 1 5.3226 0.0702 -0.0005 38 1 4.1620 -2.1214 0.0001 39 1 3.7491 -3.5180 -1.4749 40 1 2.6037 -3.7777 -2.8124 41 1 2.8532 -2.1408 -2.1594 42 1 0.9800 -4.7581 -3.1513 43 1 -0.3605 -5.6587 -2.4022 44 1 -0.4226 -3.8823 -2.4925 45 1 -0.3568 -8.1881 -1.0236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:03 Heat of formation + Delta-G solvation = 28.108748 kcal Electronic energy + Delta-G solvation = -26582.855206 eV Core-core repulsion = 22951.269851 eV Total energy + Delta-G solvation = -3631.585355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76600 -39.32503 -38.33159 -35.49539 -33.51112 -33.37295 -32.43898 -31.16426 -30.37003 -29.36527 -27.44860 -26.28799 -25.27995 -24.71324 -23.21055 -21.99127 -21.70867 -20.83505 -18.85162 -17.60376 -16.94935 -16.72019 -16.03970 -15.97065 -15.70071 -14.82948 -14.71588 -14.64751 -14.34345 -14.06011 -14.00528 -13.59569 -13.24279 -13.14327 -13.04389 -12.65214 -12.51456 -12.24600 -12.09159 -11.85242 -11.60081 -11.57955 -11.46929 -11.29690 -11.10362 -10.86425 -10.75250 -10.32745 -10.21239 -9.93247 -9.70912 -9.54751 -9.22664 -9.18037 -9.02269 -8.47055 -8.27616 -7.69075 -6.11091 -4.19411 0.31905 1.17940 1.22197 1.53715 3.16379 3.25417 3.30892 3.32439 3.49748 3.76558 3.94419 4.01186 4.36384 4.43497 4.69623 4.73420 4.80342 4.83281 4.92626 5.00339 5.17140 5.20460 5.35299 5.38180 5.50439 5.66111 5.69103 5.73193 5.78170 5.83014 5.95735 5.99380 6.11026 6.18318 6.22518 6.24882 6.29366 6.41059 6.63622 6.71102 6.73054 6.77044 6.98996 7.34244 7.43780 7.65980 7.89608 7.95360 8.13298 8.41500 8.75098 8.92200 9.46999 10.94211 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.002697 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.118969 B =10377.885589 C =11088.783672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.180 3.820 3 N -0.481 5.481 4 C 0.175 3.825 5 C -0.046 4.046 6 C -0.100 4.100 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.127 4.127 10 C -0.079 4.079 11 C -0.174 4.174 12 C -0.040 4.040 13 C -0.164 4.164 14 C 0.552 3.448 15 O -0.539 6.539 16 N -0.582 5.582 17 C 0.085 3.915 18 C 0.258 3.742 19 H 0.065 0.935 20 C -0.148 4.148 21 C -0.527 4.527 22 H 0.058 0.942 23 C 0.065 3.935 24 N -0.887 5.887 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.095 0.905 44 H 0.012 0.988 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 20.633 -1.294 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.040 3.960 3 N -0.190 5.190 4 C 0.039 3.961 5 C -0.047 4.047 6 C -0.119 4.119 7 C -0.143 4.143 8 C -0.131 4.131 9 C -0.145 4.145 10 C -0.098 4.098 11 C -0.194 4.194 12 C -0.066 4.066 13 C -0.169 4.169 14 C 0.338 3.662 15 O -0.418 6.418 16 N -0.312 5.312 17 C -0.059 4.059 18 C 0.158 3.842 19 H 0.083 0.917 20 C -0.206 4.206 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.114 0.886 44 H 0.031 0.969 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.196 21.070 -0.890 23.006 hybrid contribution 1.345 -1.672 0.014 2.146 sum 10.541 19.397 -0.876 22.093 Atomic orbital electron populations 1.21018 0.87983 1.05513 1.03323 1.21252 0.97138 0.86273 0.91288 1.67449 1.08564 1.28941 1.14053 1.19797 0.89156 0.92285 0.94884 1.18554 0.92678 0.91147 1.02300 1.21271 0.93247 0.98359 0.99053 1.21053 0.99980 0.92199 1.01071 1.21276 0.94201 0.98396 0.99218 1.21167 0.94660 0.97780 1.00897 1.21388 1.00944 0.91125 0.96321 1.21920 1.01232 0.92156 1.04105 1.21748 0.93108 0.98731 0.92989 1.21108 0.94725 0.95890 1.05218 1.17959 0.82998 0.82931 0.82338 1.90728 1.34757 1.79099 1.37205 1.48235 1.33629 1.20082 1.29229 1.21659 0.90387 0.99862 0.93977 1.19013 0.90852 0.78789 0.95546 0.91690 1.22114 0.99375 1.01417 0.97714 1.21243 0.94304 0.90395 1.50586 0.92336 1.24886 0.95168 0.98858 0.94808 1.69862 1.11009 1.22518 1.49120 0.86545 0.80419 0.81622 0.78734 1.20238 1.21128 1.20232 0.90383 0.87981 0.90383 0.85444 0.85717 0.86019 0.85772 0.84641 0.84276 0.83825 0.93284 0.90318 0.93132 0.95041 0.88622 0.96868 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.87 36.00 0.36 -1.47 16 2 C 0.18 2.91 6.82 -82.21 -0.56 2.35 16 3 N -0.48 -7.26 9.31 -5.73 -0.05 -7.31 16 4 C 0.17 2.35 6.73 -82.88 -0.56 1.79 16 5 C -0.05 -0.53 5.88 -104.91 -0.62 -1.15 16 6 C -0.10 -0.93 9.42 -39.23 -0.37 -1.30 16 7 C -0.13 -0.99 10.03 -39.63 -0.40 -1.39 16 8 C -0.11 -0.88 10.04 -39.51 -0.40 -1.27 16 9 C -0.13 -1.10 10.03 -39.63 -0.40 -1.50 16 10 C -0.08 -0.86 9.57 -39.23 -0.38 -1.23 16 11 C -0.17 -2.13 9.44 -39.18 -0.37 -2.50 16 12 C -0.04 -0.56 8.08 -38.92 -0.31 -0.88 16 13 C -0.16 -2.80 4.72 -104.78 -0.49 -3.29 16 14 C 0.55 11.51 6.57 -12.39 -0.08 11.43 16 15 O -0.54 -13.09 14.39 5.31 0.08 -13.01 16 16 N -0.58 -12.24 2.75 -176.43 -0.49 -12.73 16 17 C 0.09 1.42 8.38 59.84 0.50 1.93 16 18 C 0.26 6.44 2.63 -69.08 -0.18 6.26 16 19 H 0.07 1.88 6.91 -51.93 -0.36 1.52 16 20 C -0.15 -3.45 8.96 37.16 0.33 -3.11 16 21 C -0.53 -13.96 8.37 -34.44 -0.29 -14.25 16 22 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 23 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 24 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 25 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.78 5.50 -51.92 -0.29 1.50 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.13 0.94 6.17 -52.49 -0.32 0.62 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.14 1.50 7.53 -52.49 -0.40 1.11 16 37 H 0.14 1.24 6.17 -52.49 -0.32 0.91 16 38 H 0.14 1.85 6.87 -52.48 -0.36 1.49 16 39 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 40 H 0.08 1.33 6.44 -51.93 -0.33 1.00 16 41 H 0.05 0.73 6.48 -51.93 -0.34 0.40 16 42 H 0.03 0.67 6.67 -51.93 -0.35 0.33 16 43 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -31.14 366.12 -9.48 -40.62 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.83 Total: 3.17 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -4.31 Total: -7.92 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.09 Total: -44.11 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.14 -9.48 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.727 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds