Wall clock time and date at job start Tue Mar 31 2020 14:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31519 * 119.65297 * 2 1 4 4 C 1.32777 * 121.76892 * 180.02562 * 3 2 1 5 5 C 1.48220 * 119.57054 * 179.97438 * 4 3 2 6 6 C 1.39431 * 120.12977 * 179.72392 * 5 4 3 7 7 C 1.37992 * 119.86606 * 179.74401 * 6 5 4 8 8 C 1.38340 * 120.13306 * 0.50586 * 7 6 5 9 9 C 1.38339 * 120.25898 * 359.77045 * 8 7 6 10 10 C 1.37998 * 120.13269 * 359.97308 * 9 8 7 11 11 C 1.39509 * 120.85752 * 359.97438 * 4 3 2 12 12 C 1.38044 * 119.21354 * 359.97438 * 11 4 3 13 13 C 1.39630 * 119.65848 * 180.02562 * 2 1 3 14 14 C 1.47710 * 120.45327 * 359.95770 * 13 2 1 15 15 O 1.21566 * 120.00164 * 306.17351 * 14 13 2 16 16 N 1.34779 * 119.99845 * 126.17594 * 14 13 2 17 17 C 1.46495 * 120.00031 * 4.34853 * 16 14 13 18 18 C 1.46497 * 120.00172 * 184.34018 * 16 14 13 19 19 H 1.09006 * 109.47303 * 0.02562 * 18 16 14 20 20 C 1.52999 * 109.46966 * 119.99788 * 18 16 14 21 21 C 1.50699 * 109.47755 * 240.00352 * 18 16 14 22 22 H 1.07998 * 119.99701 * 359.97438 * 21 18 16 23 23 C 1.37869 * 120.00335 * 180.02562 * 21 18 16 24 24 N 1.31520 * 119.99906 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 120.00201 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.46892 * 59.99533 * 25 23 21 27 27 H 1.48500 * 109.47318 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46815 * 299.99703 * 25 23 21 29 29 H 1.09002 * 109.46944 * 85.34341 * 1 2 3 30 30 H 1.09009 * 109.47336 * 205.33892 * 1 2 3 31 31 H 1.09000 * 109.47608 * 325.33957 * 1 2 3 32 32 H 1.08001 * 120.06482 * 359.97438 * 6 5 4 33 33 H 1.07995 * 119.93208 * 180.27851 * 7 6 5 34 34 H 1.07993 * 119.86967 * 179.74351 * 8 7 6 35 35 H 1.08001 * 119.93391 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.06764 * 180.02562 * 10 9 8 37 37 H 1.07995 * 120.39295 * 180.02562 * 11 4 3 38 38 H 1.08003 * 120.80671 * 179.97438 * 12 11 4 39 39 H 1.08996 * 109.47914 * 84.63347 * 17 16 14 40 40 H 1.09004 * 109.47407 * 204.63946 * 17 16 14 41 41 H 1.09004 * 109.46922 * 324.63375 * 17 16 14 42 42 H 1.09002 * 109.46682 * 60.00746 * 20 18 16 43 43 H 1.09002 * 109.47448 * 180.02562 * 20 18 16 44 44 H 1.08997 * 109.47703 * 300.00294 * 20 18 16 45 45 H 0.96999 * 119.99803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1576 1.1430 0.0000 4 6 3.4845 1.1920 -0.0005 5 6 4.1678 2.5072 -0.0011 6 6 5.5606 2.5723 0.0042 7 6 6.1912 3.7997 -0.0017 8 6 5.4443 4.9642 -0.0022 9 6 4.0622 4.9059 -0.0017 10 6 3.4203 3.6843 -0.0011 11 6 4.2437 0.0216 -0.0005 12 6 3.5996 -1.1994 0.0005 13 6 2.1978 -1.2134 -0.0005 14 6 1.4618 -2.4940 -0.0002 15 8 0.6207 -2.7115 0.8502 16 7 1.7227 -3.4215 -0.9426 17 6 2.8012 -3.2004 -1.9091 18 6 0.9280 -4.6508 -1.0004 19 1 0.1790 -4.6369 -0.2086 20 6 0.2312 -4.7442 -2.3593 21 6 1.8319 -5.8426 -0.8164 22 1 2.8923 -5.6987 -0.6713 23 6 1.3052 -7.1166 -0.8342 24 7 0.0138 -7.2918 -1.0114 25 14 2.4257 -8.5938 -0.6068 26 1 3.1021 -8.5036 0.7122 27 1 1.6201 -9.8399 -0.6652 28 1 3.4457 -8.6122 -1.6860 29 1 -0.3633 0.0834 -1.0243 30 1 -0.3634 -0.9289 0.4398 31 1 -0.3634 0.8453 0.5844 32 1 6.1447 1.6639 0.0091 33 1 7.2699 3.8514 -0.0021 34 1 5.9423 5.9225 -0.0026 35 1 3.4843 5.8183 -0.0017 36 1 2.3413 3.6400 -0.0011 37 1 5.3226 0.0702 -0.0005 38 1 4.1620 -2.1214 0.0001 39 1 3.7491 -3.5180 -1.4749 40 1 2.6037 -3.7777 -2.8124 41 1 2.8532 -2.1408 -2.1594 42 1 0.9800 -4.7581 -3.1513 43 1 -0.3605 -5.6587 -2.4022 44 1 -0.4226 -3.8823 -2.4925 45 1 -0.3568 -8.1881 -1.0236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:02 Heat of formation + Delta-G solvation = 11.466030 kcal Electronic energy + Delta-G solvation = -26583.576889 eV Core-core repulsion = 22951.269851 eV Total energy + Delta-G solvation = -3632.307037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95259 -40.48649 -39.42140 -37.25591 -35.03900 -34.52844 -33.86494 -31.86108 -31.51319 -30.93167 -28.63522 -27.74325 -27.29834 -25.82511 -24.07988 -23.39845 -22.57391 -22.04136 -20.44063 -18.63465 -18.37978 -18.19519 -17.54359 -17.35525 -16.74394 -16.47089 -15.94792 -15.55547 -15.52511 -15.29748 -15.10108 -14.62783 -14.50064 -14.40901 -14.17934 -14.01846 -13.76822 -13.49083 -13.30105 -13.25699 -13.15216 -13.03101 -12.93082 -12.72060 -12.62212 -12.19141 -12.16210 -12.14069 -11.96048 -11.21976 -11.11281 -10.91478 -10.56294 -10.50399 -10.43233 -9.83502 -9.42587 -9.19807 -8.14820 -6.31440 -0.66673 0.13444 0.52681 0.65206 1.42065 1.44411 1.51664 1.70124 2.19752 2.44291 2.56549 2.94331 3.07421 3.13324 3.48355 3.52702 3.67162 3.95322 4.04530 4.15666 4.22993 4.31656 4.36462 4.47887 4.56117 4.59910 4.60255 4.63441 4.69024 4.72628 4.85784 4.87180 4.96223 5.00524 5.03076 5.05616 5.10839 5.20862 5.41838 5.45644 5.57405 5.60725 5.62725 5.64349 5.66720 5.99671 6.07739 6.13899 6.68280 6.74913 6.80936 7.21479 7.41783 8.89487 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.002697 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.118969 B =10377.885589 C =11088.783672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.170 3.830 3 N -0.493 5.493 4 C 0.176 3.824 5 C -0.075 4.075 6 C -0.100 4.100 7 C -0.126 4.126 8 C -0.107 4.107 9 C -0.133 4.133 10 C -0.097 4.097 11 C -0.163 4.163 12 C -0.035 4.035 13 C -0.189 4.189 14 C 0.551 3.449 15 O -0.588 6.588 16 N -0.588 5.588 17 C 0.084 3.916 18 C 0.262 3.738 19 H 0.012 0.988 20 C -0.134 4.134 21 C -0.539 4.539 22 H 0.062 0.938 23 C 0.015 3.985 24 N -0.917 5.917 25 Si 0.965 3.035 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.261 1.261 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.180 0.820 38 H 0.158 0.842 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.020 0.980 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 22.565 -2.038 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.031 3.969 3 N -0.203 5.203 4 C 0.040 3.960 5 C -0.076 4.076 6 C -0.118 4.118 7 C -0.144 4.144 8 C -0.125 4.125 9 C -0.151 4.151 10 C -0.115 4.115 11 C -0.182 4.182 12 C -0.061 4.061 13 C -0.195 4.195 14 C 0.338 3.662 15 O -0.470 6.470 16 N -0.317 5.317 17 C -0.058 4.058 18 C 0.161 3.839 19 H 0.030 0.970 20 C -0.192 4.192 21 C -0.577 4.577 22 H 0.081 0.919 23 C -0.184 4.184 24 N -0.555 5.555 25 Si 0.790 3.210 26 H -0.203 1.203 27 H -0.210 1.210 28 H -0.186 1.186 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.197 0.803 38 H 0.175 0.825 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.315 23.025 -1.661 26.649 hybrid contribution 0.147 -2.049 0.273 2.072 sum 13.462 20.976 -1.388 24.963 Atomic orbital electron populations 1.20926 0.88188 1.04413 1.03892 1.21282 0.97397 0.86501 0.91741 1.67495 1.09822 1.28076 1.14901 1.20345 0.88730 0.93976 0.92944 1.18644 0.93837 0.90179 1.04935 1.21549 0.92232 0.99993 0.98058 1.21457 1.01557 0.91584 0.99777 1.21695 0.93791 0.99863 0.97154 1.21419 0.95594 0.97604 1.00504 1.21438 1.00558 0.92165 0.97378 1.22270 1.03047 0.90584 1.02295 1.21914 0.91708 1.00230 0.92211 1.20774 0.95919 0.93763 1.09018 1.18520 0.82425 0.83951 0.81264 1.90690 1.37010 1.80229 1.39080 1.48191 1.34299 1.18958 1.30251 1.21863 0.89536 1.01543 0.92876 1.18616 0.90339 0.80489 0.94492 0.96978 1.21903 0.99450 1.00474 0.97398 1.21514 0.94576 0.91109 1.50497 0.91944 1.25733 0.96502 1.01706 0.94494 1.70012 1.12667 1.23034 1.49835 0.85510 0.78707 0.77987 0.78814 1.20308 1.21010 1.18592 0.89411 0.90948 0.89010 0.83385 0.82800 0.83205 0.84027 0.86058 0.80257 0.82485 0.91521 0.90504 0.90658 0.93289 0.91089 0.96046 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 9.87 71.23 0.70 -3.02 16 2 C 0.17 5.61 6.82 42.94 0.29 5.90 16 3 N -0.49 -14.79 9.31 -172.05 -1.60 -16.40 16 4 C 0.18 4.45 6.73 41.96 0.28 4.73 16 5 C -0.08 -1.57 5.88 -20.05 -0.12 -1.69 16 6 C -0.10 -1.48 9.42 22.50 0.21 -1.26 16 7 C -0.13 -1.45 10.03 22.24 0.22 -1.22 16 8 C -0.11 -1.24 10.04 22.32 0.22 -1.02 16 9 C -0.13 -1.99 10.03 22.24 0.22 -1.77 16 10 C -0.10 -1.97 9.57 22.50 0.22 -1.76 16 11 C -0.16 -3.50 9.44 22.53 0.21 -3.29 16 12 C -0.04 -0.93 8.08 22.70 0.18 -0.75 16 13 C -0.19 -6.51 4.72 -19.96 -0.09 -6.61 16 14 C 0.55 23.93 6.57 86.75 0.57 24.50 16 15 O -0.59 -30.69 14.39 -3.92 -0.06 -30.75 16 16 N -0.59 -25.30 2.75 -830.37 -2.29 -27.59 16 17 C 0.08 2.72 8.38 127.77 1.07 3.79 16 18 C 0.26 13.65 2.63 44.25 0.12 13.76 16 19 H 0.01 0.76 6.91 -2.38 -0.02 0.74 16 20 C -0.13 -6.43 8.96 71.98 0.64 -5.78 16 21 C -0.54 -29.00 8.37 25.60 0.21 -28.79 16 22 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 23 C 0.02 0.84 5.30 84.65 0.45 1.29 16 24 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 25 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.76 5.50 -2.38 -0.01 2.74 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.15 1.46 6.17 -2.91 -0.02 1.45 16 33 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.12 2.72 7.53 -2.91 -0.02 2.70 16 37 H 0.18 2.32 6.17 -2.91 -0.02 2.30 16 38 H 0.16 3.67 6.87 -2.91 -0.02 3.65 16 39 H 0.07 1.91 7.30 -2.39 -0.02 1.90 16 40 H 0.08 2.50 6.44 -2.38 -0.02 2.48 16 41 H 0.07 2.06 6.48 -2.38 -0.02 2.04 16 42 H 0.05 2.12 6.67 -2.39 -0.02 2.11 16 43 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -71.81 366.12 4.96 -66.85 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.01 Total: 18.53 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.62 Total: -2.99 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -3.65 Total: -96.30 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.75 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.81 4.96 -66.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.314 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds