Wall clock time and date at job start Tue Mar 31 2020 14:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38256 * 120.00091 * 2 1 4 4 C 1.38216 * 120.00360 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99752 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00162 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.47518 * 159.99963 * 7 6 5 9 9 N 1.46497 * 109.47011 * 39.99179 * 7 6 5 10 10 C 1.34780 * 119.99769 * 155.00267 * 9 7 6 11 11 O 1.21289 * 119.99817 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00174 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99989 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00365 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99921 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00285 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47405 * 90.00162 * 18 16 14 20 20 H 1.48502 * 109.47034 * 210.00042 * 18 16 14 21 21 H 1.48495 * 109.47072 * 329.99699 * 18 16 14 22 22 C 1.50707 * 109.46627 * 279.99894 * 7 6 5 23 23 C 1.38223 * 119.61967 * 125.00243 * 22 7 6 24 24 C 1.38625 * 119.15978 * 180.27814 * 23 22 7 25 25 C 1.38677 * 118.42126 * 359.46985 * 24 23 22 26 26 C 1.38182 * 119.16110 * 0.48634 * 25 24 23 27 27 N 1.31856 * 119.61465 * 304.97315 * 22 7 6 28 28 C 1.38216 * 120.00150 * 180.28738 * 2 1 3 29 29 H 1.09007 * 109.47640 * 89.99436 * 1 2 3 30 30 H 1.08998 * 109.46968 * 209.99530 * 1 2 3 31 31 H 1.09002 * 109.47639 * 329.99349 * 1 2 3 32 32 H 1.08006 * 119.99653 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.99900 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.99964 * 179.97438 * 5 4 3 35 35 H 0.96993 * 120.00683 * 335.00960 * 9 7 6 36 36 H 1.09004 * 109.46808 * 299.99815 * 12 10 9 37 37 H 1.08997 * 109.47139 * 59.99998 * 12 10 9 38 38 H 1.08996 * 109.47354 * 299.99703 * 13 12 10 39 39 H 1.09005 * 109.47275 * 60.00303 * 13 12 10 40 40 H 0.96998 * 120.00446 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.41617 * 359.97438 * 23 22 7 42 42 H 1.08003 * 120.79223 * 179.72202 * 24 23 22 43 43 H 1.08006 * 120.41702 * 180.22168 * 25 24 23 44 44 H 1.07998 * 119.61686 * 179.76233 * 26 25 24 45 45 H 1.07994 * 119.99947 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1969 -0.0027 7 6 4.3341 -2.5020 -0.0044 8 1 3.6797 -3.2999 0.3464 9 7 5.4950 -2.3968 0.8829 10 6 6.0193 -3.5059 1.4410 11 8 5.5302 -4.5911 1.2083 12 6 7.2132 -3.3977 2.3543 13 6 7.6056 -4.7917 2.8479 14 6 8.7999 -4.6836 3.7607 15 1 9.2351 -3.7172 3.9683 16 6 9.3363 -5.8182 4.3315 17 7 8.8060 -6.9950 4.0791 18 14 10.8161 -5.6841 5.4635 19 1 10.3541 -5.4994 6.8626 20 1 11.6255 -6.9256 5.3693 21 1 11.6454 -4.5208 5.0584 22 6 4.7984 -2.8120 -1.4043 23 6 6.1388 -3.0511 -1.6423 24 6 6.5562 -3.3296 -2.9345 25 6 5.6038 -3.3684 -3.9418 26 6 4.2813 -3.1199 -3.6280 27 7 3.9210 -2.8527 -2.3877 28 6 2.1980 -1.1970 -0.0060 29 1 -0.3635 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1327 -0.0010 34 1 5.3517 0.0001 -0.0024 35 1 5.8864 -1.5290 1.0689 36 1 8.0483 -2.9570 1.8098 37 1 6.9622 -2.7672 3.2072 38 1 6.7707 -5.2329 3.3922 39 1 7.8568 -5.4219 1.9947 40 1 9.1835 -7.7933 4.4804 41 1 6.8526 -3.0164 -0.8325 42 1 7.5977 -3.5160 -3.1511 43 1 5.8928 -3.5859 -4.9595 44 1 3.5341 -3.1444 -4.4073 45 1 1.6581 -2.1322 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291978062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:40 Heat of formation + Delta-G solvation = 13.034978 kcal Electronic energy + Delta-G solvation = -26411.078569 eV Core-core repulsion = 22778.839566 eV Total energy + Delta-G solvation = -3632.239002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80324 -39.40432 -38.89689 -35.48816 -33.47612 -32.73268 -32.59013 -31.69022 -30.85010 -30.69333 -27.19573 -26.81142 -25.28177 -23.48658 -22.88880 -22.15169 -21.75491 -20.22196 -19.72640 -17.30951 -17.12831 -16.71886 -16.30282 -15.81324 -15.60304 -15.40833 -15.01640 -14.84503 -14.58924 -14.37046 -14.08400 -13.86711 -13.56270 -13.28079 -13.17032 -13.06620 -12.63923 -12.36618 -12.26113 -12.19600 -12.03843 -11.68645 -11.30337 -11.18758 -11.12785 -10.94344 -10.61325 -9.98829 -9.86779 -9.70164 -9.59737 -9.27784 -9.11370 -9.01080 -8.96194 -8.87179 -8.71234 -8.33468 -5.97395 -4.01990 1.04185 1.20472 1.27535 1.29570 3.12227 3.29951 3.32449 3.38971 3.41375 3.60895 3.77436 4.37781 4.46600 4.47378 4.66316 4.72930 4.79915 4.87534 4.97561 5.07070 5.15118 5.18192 5.29417 5.31193 5.37617 5.41209 5.50394 5.51516 5.61277 5.68453 5.77120 5.89081 5.98145 6.07064 6.16830 6.18528 6.20808 6.30733 6.36057 6.44999 6.61840 6.68649 6.84620 6.86580 7.72356 7.77098 7.83668 7.95399 8.05237 8.36310 8.68435 9.06390 9.61708 11.13465 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012803 B = 0.003053 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.427779 B = 9168.269527 C =10494.311001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.069 4.069 7 C 0.237 3.763 8 H 0.113 0.887 9 N -0.737 5.737 10 C 0.510 3.490 11 O -0.524 6.524 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.127 3.873 23 C -0.150 4.150 24 C -0.074 4.074 25 C -0.179 4.179 26 C 0.097 3.903 27 N -0.474 5.474 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.154 0.846 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 17.038 -14.544 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.070 4.070 7 C 0.130 3.870 8 H 0.130 0.870 9 N -0.393 5.393 10 C 0.298 3.702 11 O -0.398 6.398 12 C -0.170 4.170 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.012 4.012 23 C -0.170 4.170 24 C -0.100 4.100 25 C -0.199 4.199 26 C -0.061 4.061 27 N -0.183 5.183 28 C -0.108 4.108 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.236 0.764 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.600 16.171 -14.461 25.604 hybrid contribution 2.039 0.194 0.373 2.082 sum -11.561 16.365 -14.088 24.493 Atomic orbital electron populations 1.20783 0.91150 1.02765 1.02319 1.19877 0.96083 0.92972 0.99668 1.21017 0.94245 0.97425 1.01232 1.21041 0.94296 0.97708 1.00254 1.20887 0.99700 0.92049 1.01029 1.19575 0.93851 0.93329 1.00216 1.18260 0.87651 0.95836 0.85229 0.86954 1.46371 1.32704 1.10858 1.49330 1.21688 0.85370 0.83199 0.79912 1.90702 1.61383 1.27168 1.60569 1.21899 0.93112 1.04761 0.97207 1.18899 0.96386 0.88280 0.96440 1.21209 1.13846 0.93157 1.28363 0.92593 1.25023 0.97230 0.95419 0.96696 1.69998 1.40907 0.97953 1.43915 0.86595 0.82763 0.77472 0.81146 1.20654 1.21233 1.19890 1.21385 0.89990 0.95012 0.94780 1.21962 0.97203 1.00070 0.97806 1.21613 1.00276 0.95481 0.92634 1.22112 0.94688 1.02628 1.00457 1.22663 0.94773 0.95315 0.93313 1.67323 1.38158 1.12723 1.00129 1.20835 0.92988 0.97895 0.99091 0.91180 0.91410 0.91659 0.86254 0.86033 0.86294 0.76406 0.90163 0.89971 0.95759 0.95821 0.92937 0.84674 0.84795 0.85000 0.82914 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -1.10 10.05 -39.58 -0.40 -1.50 16 5 C -0.12 -1.27 9.05 -39.58 -0.36 -1.63 16 6 C -0.07 -0.84 4.74 -104.62 -0.50 -1.34 16 7 C 0.24 3.35 2.65 -70.23 -0.19 3.16 16 8 H 0.11 1.82 7.44 -51.93 -0.39 1.43 16 9 N -0.74 -10.37 3.98 -56.07 -0.22 -10.60 16 10 C 0.51 9.47 6.40 -10.98 -0.07 9.40 16 11 O -0.52 -12.07 15.65 5.55 0.09 -11.98 16 12 C -0.13 -2.55 5.64 -27.88 -0.16 -2.70 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 C 0.13 1.85 6.15 -82.58 -0.51 1.35 16 23 C -0.15 -2.14 9.14 -39.44 -0.36 -2.50 16 24 C -0.07 -0.89 10.18 -39.28 -0.40 -1.29 16 25 C -0.18 -1.91 10.11 -39.44 -0.40 -2.31 16 26 C 0.10 1.12 11.18 -17.55 -0.20 0.93 16 27 N -0.47 -6.65 10.01 -9.47 -0.09 -6.75 16 28 C -0.09 -1.04 9.33 -39.58 -0.37 -1.41 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.11 6.92 -52.49 -0.36 0.75 16 35 H 0.40 4.50 6.87 -40.82 -0.28 4.21 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.14 1.97 6.08 -52.49 -0.32 1.65 16 42 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.39 8.04 -52.49 -0.42 0.97 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -34.88 381.30 -10.21 -45.09 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.38 Total: 4.50 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -5.07 Total: -15.98 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.42 Total: -43.89 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.88 -10.21 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291978062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.125 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds