Wall clock time and date at job start Tue Mar 31 2020 14:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38256 * 120.00091 * 2 1 4 4 C 1.38216 * 120.00360 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99752 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00162 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.47518 * 159.99963 * 7 6 5 9 9 N 1.46497 * 109.47011 * 39.99179 * 7 6 5 10 10 C 1.34780 * 119.99769 * 155.00267 * 9 7 6 11 11 O 1.21289 * 119.99817 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00174 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99989 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00365 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99921 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00285 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47405 * 90.00162 * 18 16 14 20 20 H 1.48502 * 109.47034 * 210.00042 * 18 16 14 21 21 H 1.48495 * 109.47072 * 329.99699 * 18 16 14 22 22 C 1.50707 * 109.46627 * 279.99894 * 7 6 5 23 23 C 1.38223 * 119.61967 * 125.00243 * 22 7 6 24 24 C 1.38625 * 119.15978 * 180.27814 * 23 22 7 25 25 C 1.38677 * 118.42126 * 359.46985 * 24 23 22 26 26 C 1.38182 * 119.16110 * 0.48634 * 25 24 23 27 27 N 1.31856 * 119.61465 * 304.97315 * 22 7 6 28 28 C 1.38216 * 120.00150 * 180.28738 * 2 1 3 29 29 H 1.09007 * 109.47640 * 89.99436 * 1 2 3 30 30 H 1.08998 * 109.46968 * 209.99530 * 1 2 3 31 31 H 1.09002 * 109.47639 * 329.99349 * 1 2 3 32 32 H 1.08006 * 119.99653 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.99900 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.99964 * 179.97438 * 5 4 3 35 35 H 0.96993 * 120.00683 * 335.00960 * 9 7 6 36 36 H 1.09004 * 109.46808 * 299.99815 * 12 10 9 37 37 H 1.08997 * 109.47139 * 59.99998 * 12 10 9 38 38 H 1.08996 * 109.47354 * 299.99703 * 13 12 10 39 39 H 1.09005 * 109.47275 * 60.00303 * 13 12 10 40 40 H 0.96998 * 120.00446 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.41617 * 359.97438 * 23 22 7 42 42 H 1.08003 * 120.79223 * 179.72202 * 24 23 22 43 43 H 1.08006 * 120.41702 * 180.22168 * 25 24 23 44 44 H 1.07998 * 119.61686 * 179.76233 * 26 25 24 45 45 H 1.07994 * 119.99947 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1969 -0.0027 7 6 4.3341 -2.5020 -0.0044 8 1 3.6797 -3.2999 0.3464 9 7 5.4950 -2.3968 0.8829 10 6 6.0193 -3.5059 1.4410 11 8 5.5302 -4.5911 1.2083 12 6 7.2132 -3.3977 2.3543 13 6 7.6056 -4.7917 2.8479 14 6 8.7999 -4.6836 3.7607 15 1 9.2351 -3.7172 3.9683 16 6 9.3363 -5.8182 4.3315 17 7 8.8060 -6.9950 4.0791 18 14 10.8161 -5.6841 5.4635 19 1 10.3541 -5.4994 6.8626 20 1 11.6255 -6.9256 5.3693 21 1 11.6454 -4.5208 5.0584 22 6 4.7984 -2.8120 -1.4043 23 6 6.1388 -3.0511 -1.6423 24 6 6.5562 -3.3296 -2.9345 25 6 5.6038 -3.3684 -3.9418 26 6 4.2813 -3.1199 -3.6280 27 7 3.9210 -2.8527 -2.3877 28 6 2.1980 -1.1970 -0.0060 29 1 -0.3635 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1327 -0.0010 34 1 5.3517 0.0001 -0.0024 35 1 5.8864 -1.5290 1.0689 36 1 8.0483 -2.9570 1.8098 37 1 6.9622 -2.7672 3.2072 38 1 6.7707 -5.2329 3.3922 39 1 7.8568 -5.4219 1.9947 40 1 9.1835 -7.7933 4.4804 41 1 6.8526 -3.0164 -0.8325 42 1 7.5977 -3.5160 -3.1511 43 1 5.8928 -3.5859 -4.9595 44 1 3.5341 -3.1444 -4.4073 45 1 1.6581 -2.1322 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291978062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:39 Heat of formation + Delta-G solvation = -7.733012 kcal Electronic energy + Delta-G solvation = -26411.979136 eV Core-core repulsion = 22778.839566 eV Total energy + Delta-G solvation = -3633.139570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88141 -40.43227 -40.08881 -36.69278 -35.55237 -33.78632 -33.39634 -33.13904 -32.27920 -31.70277 -28.41913 -27.72249 -26.92401 -24.47468 -24.00386 -23.39759 -22.97534 -21.33155 -21.11304 -18.90838 -18.25677 -17.89743 -17.59340 -17.08269 -16.69632 -16.44483 -16.37444 -16.29262 -15.93345 -15.53393 -15.02807 -14.82598 -14.69101 -14.51123 -14.17970 -14.05425 -13.98314 -13.87708 -13.54174 -13.24073 -12.99540 -12.90515 -12.82087 -12.58641 -12.47543 -12.10149 -11.92820 -11.89766 -11.64530 -11.30720 -10.85846 -10.84619 -10.68318 -10.55777 -10.20111 -9.97588 -9.72079 -9.51783 -8.17751 -6.31673 0.09509 0.31918 0.38003 0.48622 1.42354 1.44895 1.55723 1.62265 2.04167 2.43629 2.76420 2.82070 3.15468 3.38036 3.52117 3.85064 3.87583 4.00196 4.00877 4.05230 4.20478 4.20511 4.23166 4.35426 4.48496 4.50447 4.54084 4.57790 4.63042 4.77464 4.82137 4.85074 4.96935 5.03043 5.10232 5.12637 5.24100 5.28215 5.33445 5.50401 5.53881 5.62836 5.63179 5.69849 5.73864 5.85605 6.09717 6.17519 6.48396 6.86698 6.98063 7.24955 7.38624 8.94852 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012803 B = 0.003053 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.427779 B = 9168.269527 C =10494.311001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.128 4.128 6 C -0.082 4.082 7 C 0.241 3.759 8 H 0.081 0.919 9 N -0.711 5.711 10 C 0.517 3.483 11 O -0.578 6.578 12 C -0.119 4.119 13 C 0.044 3.956 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.254 1.254 22 C 0.109 3.891 23 C -0.175 4.175 24 C -0.081 4.081 25 C -0.169 4.169 26 C 0.089 3.911 27 N -0.494 5.494 28 C -0.110 4.110 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.417 0.583 36 H 0.109 0.891 37 H 0.106 0.894 38 H -0.019 1.019 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.124 0.876 42 H 0.155 0.845 43 H 0.169 0.831 44 H 0.184 0.816 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 20.287 -15.402 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.082 4.082 7 C 0.135 3.865 8 H 0.099 0.901 9 N -0.365 5.365 10 C 0.306 3.694 11 O -0.456 6.456 12 C -0.158 4.158 13 C 0.006 3.994 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.178 1.178 22 C -0.029 4.029 23 C -0.195 4.195 24 C -0.107 4.107 25 C -0.188 4.188 26 C -0.069 4.069 27 N -0.204 5.204 28 C -0.128 4.128 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.000 1.000 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.173 0.827 43 H 0.187 0.813 44 H 0.201 0.799 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.843 19.501 -15.326 27.930 hybrid contribution 1.715 -0.801 0.524 1.964 sum -11.127 18.700 -14.803 26.318 Atomic orbital electron populations 1.20825 0.89493 1.03536 1.03038 1.20179 0.97428 0.92621 0.98900 1.21389 0.94476 0.98133 0.99983 1.21385 0.94647 0.98176 0.99002 1.21060 1.00380 0.91938 1.01214 1.19463 0.94030 0.92760 1.01993 1.18146 0.86859 0.96291 0.85198 0.90136 1.45993 1.32177 1.10314 1.48059 1.21430 0.84964 0.83346 0.79703 1.90686 1.62927 1.29409 1.62620 1.21672 0.94604 1.00929 0.98613 1.18673 0.94813 0.91411 0.94489 1.21709 1.14012 0.94086 1.28119 0.90499 1.26129 1.00812 0.94915 0.98587 1.70181 1.43011 0.99033 1.45562 0.85336 0.78415 0.77949 0.78648 1.19806 1.21273 1.17780 1.21336 0.90378 0.96234 0.94922 1.22015 0.96969 1.01695 0.98783 1.21955 1.01818 0.94862 0.92080 1.22511 0.93859 1.00666 1.01807 1.23297 0.96247 0.94275 0.93063 1.67318 1.38465 1.13575 1.01061 1.20913 0.93028 0.98494 1.00377 0.90396 0.91610 0.89952 0.83591 0.83399 0.85218 0.74409 0.87303 0.87567 1.00039 0.99814 0.92907 0.85814 0.82745 0.81310 0.79873 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.23 0.71 -0.83 16 2 C -0.09 -1.74 5.88 -19.87 -0.12 -1.86 16 3 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 4 C -0.11 -1.91 10.05 22.27 0.22 -1.69 16 5 C -0.13 -2.60 9.05 22.27 0.20 -2.40 16 6 C -0.08 -2.03 4.74 -19.87 -0.09 -2.12 16 7 C 0.24 7.22 2.65 43.50 0.12 7.34 16 8 H 0.08 2.90 7.44 -2.39 -0.02 2.88 16 9 N -0.71 -20.57 3.98 -449.68 -1.79 -22.36 16 10 C 0.52 20.07 6.40 87.66 0.56 20.63 16 11 O -0.58 -28.67 15.65 -3.06 -0.05 -28.72 16 12 C -0.12 -4.69 5.64 29.85 0.17 -4.52 16 13 C 0.04 2.43 4.26 29.85 0.13 2.55 16 14 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 15 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 16 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 17 N -0.94 -59.63 13.29 21.45 0.28 -59.35 16 18 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 22 C 0.11 3.30 6.15 42.55 0.26 3.56 16 23 C -0.17 -5.06 9.14 22.36 0.20 -4.86 16 24 C -0.08 -1.89 10.18 22.47 0.23 -1.66 16 25 C -0.17 -3.26 10.11 22.36 0.23 -3.03 16 26 C 0.09 1.93 11.18 84.67 0.95 2.88 16 27 N -0.49 -14.03 10.01 -183.88 -1.84 -15.87 16 28 C -0.11 -2.61 9.33 22.27 0.21 -2.41 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.13 2.24 6.92 -2.91 -0.02 2.22 16 35 H 0.42 9.13 6.87 -92.71 -0.64 8.50 16 36 H 0.11 3.68 8.14 -2.39 -0.02 3.67 16 37 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 38 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 39 H -0.02 -1.04 8.10 -2.38 -0.02 -1.06 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.12 3.74 6.08 -2.91 -0.02 3.72 16 42 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.12 2.82 8.04 -2.91 -0.02 2.80 16 Total: -1.00 -80.72 381.30 3.88 -76.84 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.36 Total: 23.73 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.89 Total: -20.50 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -3.35 Total: -97.58 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -80.72 3.88 -76.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291978062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.111 kcal (2) G-P(sol) polarization free energy of solvation -80.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds