Wall clock time and date at job start Tue Mar 31 2020 14:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38669 * 120.41899 * 2 1 4 4 C 1.38626 * 118.41968 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.16005 * 0.02562 * 4 3 2 6 6 N 1.31852 * 120.76368 * 359.97438 * 5 4 3 7 7 C 1.31878 * 121.72587 * 359.70997 * 6 5 4 8 8 C 1.50706 * 119.62006 * 180.30718 * 7 6 5 9 9 C 1.52995 * 109.47126 * 270.27352 * 8 7 6 10 10 C 1.53004 * 109.46937 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99978 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.47638 * 119.99831 * 179.97438 * 12 11 10 15 15 C 1.40008 * 119.89776 * 359.72048 * 14 12 11 16 16 C 1.36320 * 120.10778 * 179.75809 * 15 14 12 17 17 C 1.40894 * 119.88987 * 0.51727 * 16 15 14 18 18 C 1.41103 * 120.10618 * 179.71621 * 17 16 15 19 19 H 1.07999 * 120.00392 * 204.65682 * 18 17 16 20 20 C 1.40229 * 119.99844 * 24.64868 * 18 17 16 21 21 N 1.30651 * 119.99704 * 17.87116 * 20 18 17 22 22 Si 1.86799 * 120.00320 * 197.86280 * 20 18 17 23 23 H 1.48503 * 109.46858 * 60.00562 * 22 20 18 24 24 H 1.48494 * 109.47308 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47096 * 300.00943 * 22 20 18 26 26 C 1.40888 * 119.79197 * 359.73964 * 17 16 15 27 27 C 1.36317 * 119.89419 * 359.97438 * 26 17 16 28 28 H 1.08990 * 109.46761 * 90.00058 * 1 2 3 29 29 H 1.09004 * 109.46992 * 330.00236 * 1 2 3 30 30 H 1.08996 * 109.47036 * 210.00874 * 1 2 3 31 31 H 1.08004 * 120.79052 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.42294 * 179.97438 * 4 3 2 33 33 H 1.08007 * 119.61589 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.46694 * 30.27208 * 8 7 6 35 35 H 1.08997 * 109.46852 * 150.26959 * 8 7 6 36 36 H 1.09002 * 109.46819 * 299.99571 * 9 8 7 37 37 H 1.08997 * 109.47576 * 60.00050 * 9 8 7 38 38 H 1.08996 * 109.47003 * 299.99930 * 10 9 8 39 39 H 1.08997 * 109.46732 * 59.99796 * 10 9 8 40 40 H 0.96998 * 120.00068 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.95022 * 0.02562 * 15 14 12 42 42 H 1.07995 * 120.05784 * 180.23018 * 16 15 14 43 43 H 0.97006 * 119.99676 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.05521 * 179.97438 * 26 17 16 45 45 H 1.08005 * 119.95113 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0005 6 7 3.5254 -1.1997 0.0005 7 6 2.2067 -1.1916 0.0062 8 6 1.4539 -2.4972 0.0129 9 6 1.1988 -2.9463 -1.4273 10 6 0.4351 -4.2720 -1.4204 11 7 0.1904 -4.7017 -2.7994 12 6 -0.4717 -5.8509 -3.0398 13 8 -0.8654 -6.5311 -2.1120 14 6 -0.7188 -6.2836 -4.4295 15 6 -0.2696 -5.4957 -5.4961 16 6 -0.4911 -5.8936 -6.7810 17 6 -1.1829 -7.0945 -7.0347 18 6 -1.4199 -7.5077 -8.3629 19 1 -2.2483 -8.1641 -8.5846 20 6 -0.5799 -7.0658 -9.3951 21 7 0.5981 -6.5756 -9.1140 22 14 -1.1449 -7.1782 -11.1721 23 1 -2.3828 -6.3774 -11.3494 24 1 -0.0814 -6.6505 -12.0640 25 1 -1.4196 -8.5966 -11.5153 26 6 -1.6377 -7.8812 -5.9581 27 6 -1.4064 -7.4780 -4.6766 28 1 -0.3632 0.0000 -1.0276 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8899 0.5140 31 1 1.6890 2.1423 0.0004 32 1 4.1736 2.0591 0.0001 33 1 5.3047 -0.1287 0.0005 34 1 2.0435 -3.2538 0.5304 35 1 0.5015 -2.3648 0.5263 36 1 0.6092 -2.1895 -1.9447 37 1 2.1512 -3.0787 -1.9407 38 1 1.0251 -5.0285 -0.9030 39 1 -0.5172 -4.1400 -0.9069 40 1 0.5042 -4.1589 -3.5395 41 1 0.2571 -4.5733 -5.3006 42 1 -0.1410 -5.2871 -7.6030 43 1 1.1794 -6.2702 -9.8281 44 1 -2.1688 -8.8023 -6.1477 45 1 -1.7550 -8.0802 -3.8506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296531448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:04 Heat of formation + Delta-G solvation = -7.316004 kcal Electronic energy + Delta-G solvation = -25160.638118 eV Core-core repulsion = 21527.516631 eV Total energy + Delta-G solvation = -3633.121487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66760 -39.06603 -37.17455 -35.79818 -34.01145 -33.85951 -33.40153 -31.16342 -29.97751 -29.42649 -27.79148 -26.67595 -25.43608 -23.06065 -22.41877 -21.63630 -21.34476 -20.83666 -19.48934 -17.52052 -17.15941 -16.86172 -16.62773 -15.63632 -15.37628 -15.34904 -14.98647 -14.71722 -14.05837 -13.92437 -13.79522 -13.45213 -13.25856 -13.23344 -13.10791 -12.89214 -12.71258 -12.32103 -12.15307 -12.07188 -11.94425 -11.78505 -11.34650 -11.26268 -11.25262 -10.98672 -10.83907 -10.62468 -10.05719 -10.00031 -9.66722 -9.54956 -9.34111 -9.08787 -8.91203 -8.56198 -7.71114 -7.53219 -7.02944 -4.59546 0.80997 0.99337 2.25134 2.92758 2.94380 2.98546 3.04614 3.45490 3.74020 3.80982 3.89223 4.07151 4.37810 4.49518 4.57766 4.59989 4.71260 4.94850 4.96415 5.10427 5.12801 5.28313 5.32815 5.46228 5.48717 5.57609 5.60427 5.67808 5.79780 5.86769 5.95492 6.00806 6.05920 6.14022 6.24804 6.33285 6.45376 6.77717 6.83373 6.96156 7.07880 7.14589 7.44361 7.66603 7.75818 7.80364 7.86654 8.07951 8.26769 8.40487 8.63739 8.76243 9.10624 9.89058 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002098 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.592552 B =13339.892313 C =14404.933446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 C -0.077 4.077 4 C -0.177 4.177 5 C 0.094 3.906 6 N -0.478 5.478 7 C 0.134 3.866 8 C -0.071 4.071 9 C -0.122 4.122 10 C 0.125 3.875 11 N -0.743 5.743 12 C 0.571 3.429 13 O -0.576 6.576 14 C -0.284 4.284 15 C -0.063 4.063 16 C -0.179 4.179 17 C 0.128 3.872 18 C -0.443 4.443 19 H 0.084 0.916 20 C 0.074 3.926 21 N -0.772 5.772 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.022 4.022 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.397 0.603 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 16.152 12.097 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.197 4.197 5 C -0.063 4.063 6 N -0.186 5.186 7 C -0.004 4.004 8 C -0.109 4.109 9 C -0.160 4.160 10 C 0.001 3.999 11 N -0.396 5.396 12 C 0.366 3.634 13 O -0.459 6.459 14 C -0.289 4.289 15 C -0.082 4.082 16 C -0.198 4.198 17 C 0.125 3.875 18 C -0.471 4.471 19 H 0.103 0.897 20 C -0.147 4.147 21 N -0.395 5.395 22 Si 0.737 3.263 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.258 4.258 27 C -0.042 4.042 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.681 14.963 12.657 20.149 hybrid contribution -0.136 1.268 -1.217 1.763 sum 4.546 16.231 11.439 20.371 Atomic orbital electron populations 1.20855 0.90108 1.03297 1.03051 1.20765 0.97694 0.93566 1.01470 1.21487 0.94197 0.98069 0.96560 1.22123 0.95303 0.99638 1.02601 1.22747 1.00314 0.87666 0.95569 1.67521 1.07787 1.31519 1.11797 1.21122 0.89645 0.94749 0.94895 1.20516 0.99652 0.92953 0.97803 1.21699 1.01303 0.96945 0.96098 1.21146 0.99429 0.94740 0.84572 1.45897 1.60709 1.25403 1.07587 1.18583 0.75860 0.79209 0.89752 1.90630 1.53653 1.55115 1.46463 1.18907 1.17518 1.02225 0.90211 1.20473 0.97606 0.96824 0.93284 1.20974 1.05809 0.97964 0.95049 1.17786 0.87473 0.89593 0.92658 1.19811 1.11088 1.24739 0.91418 0.89750 1.26104 0.93723 0.92468 1.02420 1.69743 1.05985 1.27579 1.36201 0.86259 0.79681 0.80074 0.80240 1.18481 1.20070 1.18660 1.20713 1.11557 1.01307 0.92254 1.20371 0.94045 0.93695 0.96046 0.90517 0.91421 0.90509 0.84951 0.84914 0.82825 0.89538 0.89527 0.91282 0.90840 0.91908 0.92035 0.76805 0.89368 0.86216 0.90188 0.88390 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.63 36.01 0.35 -0.44 16 2 C -0.13 -1.18 5.90 -104.48 -0.62 -1.80 16 3 C -0.08 -0.60 9.86 -39.28 -0.39 -0.99 16 4 C -0.18 -1.34 10.11 -39.44 -0.40 -1.74 16 5 C 0.09 0.86 11.18 -17.55 -0.20 0.67 16 6 N -0.48 -5.52 10.27 -9.47 -0.10 -5.62 16 7 C 0.13 1.40 6.03 -82.59 -0.50 0.91 16 8 C -0.07 -0.68 5.10 -27.88 -0.14 -0.83 16 9 C -0.12 -1.31 5.31 -26.73 -0.14 -1.46 16 10 C 0.13 1.73 5.67 -4.04 -0.02 1.70 16 11 N -0.74 -12.52 5.50 -61.31 -0.34 -12.86 16 12 C 0.57 12.31 7.76 -12.42 -0.10 12.22 16 13 O -0.58 -13.91 16.32 5.29 0.09 -13.82 16 14 C -0.28 -6.56 5.89 -104.73 -0.62 -7.18 16 15 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 16 C -0.18 -4.40 8.64 -39.27 -0.34 -4.74 16 17 C 0.13 3.28 5.58 -106.80 -0.60 2.69 16 18 C -0.44 -11.04 9.04 -37.75 -0.34 -11.38 16 19 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 20 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 21 N -0.77 -18.56 10.95 55.56 0.61 -17.95 16 22 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 26 C -0.24 -5.82 9.73 -39.27 -0.38 -6.21 16 27 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.69 5.94 -51.93 -0.31 0.39 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.40 6.02 6.47 -40.82 -0.26 5.75 16 41 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 42 H 0.12 2.98 6.16 -52.49 -0.32 2.65 16 43 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 44 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -30.38 377.44 -10.49 -40.87 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.14 Total: 11.05 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -5.27 Total: -19.62 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.17 Total: -36.43 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.38 -10.49 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296531448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.556 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds